Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:45:32 (5102): wrapper (7.7.26015): starting
02:45:32 (5102): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 02:45:33] Arguments: --nthreads 8
[2026-01-08 02:45:33] Threads: 8
[2026-01-08 02:45:33] Checking for CVMFS
[2026-01-08 02:45:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 02:45:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 02:45:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 02:45:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 02:45:36] 2.11.2.0 17738 33333 103620 154886 2 13 16964362 25165825 899 130560 0 14688267 99.840 8825534 3624 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 02:45:36] CVMFS is ok
[2026-01-08 02:45:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 02:45:36] Checking for apptainer binary...
[2026-01-08 02:45:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 02:45:36] Running /usr/bin/apptainer --version
[2026-01-08 02:45:36] apptainer version 1.3.2-1.el7
[2026-01-08 02:45:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 02:47:39] cg-vwn450.simple-grid.lan
[2026-01-08 02:47:39] apptainer works
[2026-01-08 02:47:39] Set ATHENA_PROC_NUMBER=8
[2026-01-08 02:47:39] Set ATHENA_CORE_NUMBER=8
[2026-01-08 02:47:40] Starting ATLAS job with PandaID=6962317235
[2026-01-08 02:47:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 09:03:58]  *** The last 200 lines of the pilot log: ***
[2026-01-08 09:03:58] 2026-01-08 08:02:50,548 | INFO     | sum of square deviations: 13523929848.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,553 | INFO     | sum of deviations: 252561498962.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,553 | INFO     | mean x: 1767848506.5
[2026-01-08 09:03:58] 2026-01-08 08:02:50,553 | INFO     | mean y: 2422742.835227273
[2026-01-08 09:03:58] 2026-01-08 08:02:50,553 | INFO     | intersect: -33012423811.20858
[2026-01-08 09:03:58] 2026-01-08 08:02:50,554 | INFO     | chi2: 10.368490445855555
[2026-01-08 09:03:58] 2026-01-08 08:02:50,555 | INFO     | sum of square deviations: 12955770358.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,559 | INFO     | sum of deviations: 271934162672.99997
[2026-01-08 09:03:58] 2026-01-08 08:02:50,559 | INFO     | mean x: 1767848354.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,559 | INFO     | mean y: 2427870.4207492797
[2026-01-08 09:03:58] 2026-01-08 08:02:50,559 | INFO     | intersect: -37103691533.81694
[2026-01-08 09:03:58] 2026-01-08 08:02:50,560 | INFO     | chi2: 9.6602384933854
[2026-01-08 09:03:58] 2026-01-08 08:02:50,560 | INFO     | current chi2=9.6602384933854 (change=6.830810677491188 %)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,560 | INFO     | right removable region: 346
[2026-01-08 09:03:58] 2026-01-08 08:02:50,561 | INFO     | sum of square deviations: 12955770358.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,572 | INFO     | sum of deviations: 125180189921.00002
[2026-01-08 09:03:58] 2026-01-08 08:02:50,573 | INFO     | mean x: 1767848659.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,573 | INFO     | mean y: 2456929.850144092
[2026-01-08 09:03:58] 2026-01-08 08:02:50,573 | INFO     | intersect: -17078706503.133669
[2026-01-08 09:03:58] 2026-01-08 08:02:50,574 | INFO     | chi2: 4.957736340397233
[2026-01-08 09:03:58] 2026-01-08 08:02:50,574 | INFO     | current chi2=4.957736340397233 (change=52.18458881467247 %)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,574 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 09:03:58] 2026-01-08 08:02:50,578 | INFO     | sum of deviations: 21831070735.50001
[2026-01-08 09:03:58] 2026-01-08 08:02:50,579 | INFO     | mean x: 1767848811.5
[2026-01-08 09:03:58] 2026-01-08 08:02:50,579 | INFO     | mean y: 2485464.804093567
[2026-01-08 09:03:58] 2026-01-08 08:02:50,579 | INFO     | intersect: -3108995358.203175
[2026-01-08 09:03:58] 2026-01-08 08:02:50,579 | INFO     | chi2: 1.6354653067264469
[2026-01-08 09:03:58] 2026-01-08 08:02:50,589 | INFO     | current chi2=1.6354653067264469 (change=67.01185391001638 %)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,590 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,593 | INFO     | sum of deviations: -24042984873.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,594 | INFO     | mean x: 1767848964.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,594 | INFO     | mean y: 2498464.0830860534
[2026-01-08 09:03:58] 2026-01-08 08:02:50,594 | INFO     | intersect: 3584033789.348074
[2026-01-08 09:03:58] 2026-01-08 08:02:50,595 | INFO     | chi2: 0.8400394557599745
[2026-01-08 09:03:58] 2026-01-08 08:02:50,595 | INFO     | current chi2=0.8400394557599745 (change=48.63605774423913 %)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,595 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,599 | INFO     | sum of deviations: -31084066521.0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,599 | INFO     | mean x: 1767849116.5
[2026-01-08 09:03:58] 2026-01-08 08:02:50,599 | INFO     | mean y: 2500511.5903614457
[2026-01-08 09:03:58] 2026-01-08 08:02:50,600 | INFO     | intersect: 4845275497.9850025
[2026-01-08 09:03:58] 2026-01-08 08:02:50,600 | INFO     | chi2: 0.8066227780490647
[2026-01-08 09:03:58] 2026-01-08 08:02:50,600 | INFO     | current chi2=0.8066227780490647 (change=3.9779890672728144 %)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,600 | INFO     | left removable region: 40
[2026-01-08 09:03:58] 2026-01-08 08:02:50,601 | INFO     | sum of square deviations: 8884603792.5
[2026-01-08 09:03:58] 2026-01-08 08:02:50,613 | INFO     | sum of deviations: -4154033936.9999948
[2026-01-08 09:03:58] 2026-01-08 08:02:50,613 | INFO     | mean x: 1767849543.5
[2026-01-08 09:03:58] 2026-01-08 08:02:50,613 | INFO     | mean y: 2505530.3333333335
[2026-01-08 09:03:58] 2026-01-08 08:02:50,613 | INFO     | intersect: 829071032.9400101
[2026-01-08 09:03:58] 2026-01-08 08:02:50,614 | INFO     | chi2: 0.018163302386142128
[2026-01-08 09:03:58] 2026-01-08 08:02:50,614 | INFO     | current memory leak: -0.47 B/s (using 306 data points, chi2=0.02)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,632 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,632 | INFO     | ..............................
[2026-01-08 09:03:58] 2026-01-08 08:02:50,632 | INFO     | . Timing measurements:
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . get job = 0 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . initial setup = 12 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . payload setup = 162 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . stage-in = 0 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . payload execution = 21621 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . stage-out = 4 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,652 | INFO     | . log creation = 1 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,653 | INFO     | ..............................
[2026-01-08 09:03:58] 2026-01-08 08:02:50,814 | INFO     | 
[2026-01-08 09:03:58] 2026-01-08 08:02:50,814 | INFO     | job summary report
[2026-01-08 09:03:58] 2026-01-08 08:02:50,814 | INFO     | --------------------------------------------------
[2026-01-08 09:03:58] 2026-01-08 08:02:50,814 | INFO     | PanDA job id: 6962317235
[2026-01-08 09:03:58] 2026-01-08 08:02:50,814 | INFO     | task id: 47898826
[2026-01-08 09:03:58] 2026-01-08 08:02:50,814 | INFO     | errors: (none)
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | pilot state: finished 
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | transexitcode: 0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | exeerrorcode: 0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | exeerrordiag: 
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | exitcode: 0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | exitmsg: OK
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | cpuconsumptiontime: 80781 s
[2026-01-08 09:03:58] 2026-01-08 08:02:50,815 | INFO     | nevents: 400
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | neventsw: 0
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | pid: 15533
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | pgrp: 15533
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | corecount: 8
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | event service: False
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | sizes: {0: 2283140, 1: 2283826, 2: 2284025, 13: 2284025, 24: 2284081, 35: 2284109, 45: 2284265, 56: 2284293, 67: 2284321, 77: 2284349, 88: 2284405, 99: 2284713, 10
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | --------------------------------------------------
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | 
[2026-01-08 09:03:58] 2026-01-08 08:02:50,816 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-08 09:03:58] 2026-01-08 08:02:50,926 | INFO     | time since job start (22121s) is within the limit (174528.0s)
[2026-01-08 09:03:58] 2026-01-08 08:02:51,240 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,240 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,240 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,240 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,240 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 09:03:58] 2026-01-08 08:02:51,242 | INFO     | job 6962317235 has completed (purged errors)
[2026-01-08 09:03:58] 2026-01-08 08:02:51,243 | INFO     | overall cleanup function is called
[2026-01-08 09:03:58] 2026-01-08 08:02:52,252 | INFO     | --- collectZombieJob: --- 10, [15533]
[2026-01-08 09:03:58] 2026-01-08 08:02:52,252 | INFO     | zombie collector waiting for pid 15533
[2026-01-08 09:03:58] 2026-01-08 08:02:52,252 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 09:03:58] 2026-01-08 08:02:52,252 | INFO     | collected zombie processes
[2026-01-08 09:03:58] 2026-01-08 08:02:52,252 | INFO     | will attempt to kill all subprocesses of pid=15533
[2026-01-08 09:03:58] 2026-01-08 08:02:52,338 | INFO     | process IDs to be killed: [15533] (in reverse order)
[2026-01-08 09:03:58] 2026-01-08 08:02:53,178 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 09:03:58] 2026-01-08 08:02:53,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 09:03:58] 2026-01-08 08:02:53,185 | INFO     | did not find any defunct processes belonging to 15533
[2026-01-08 09:03:58] 2026-01-08 08:02:53,187 | INFO     | did not find any defunct processes belonging to 15533
[2026-01-08 09:03:58] 2026-01-08 08:02:53,188 | INFO     | ready for new job
[2026-01-08 09:03:58] 2026-01-08 08:02:53,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 09:03:58] 2026-01-08 08:02:53,190 | INFO     | ***************************************
[2026-01-08 09:03:58] 2026-01-08 08:02:53,190 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 09:03:58] 2026-01-08 08:02:53,191 | INFO     | ***************************************
[2026-01-08 09:03:58] 2026-01-08 08:02:53,191 | INFO     | 
[2026-01-08 09:03:58] 2026-01-08 08:02:53,191 | INFO     | pilot is running in a VM
[2026-01-08 09:03:58] 2026-01-08 08:02:53,191 | INFO     | architecture information:
[2026-01-08 09:03:58] 2026-01-08 08:02:53,193 | INFO     | executing command: cat /etc/os-release
[2026-01-08 09:03:58] 2026-01-08 08:02:53,440 | INFO     | cat /etc/os-release:
[2026-01-08 09:03:58] NAME="CentOS Linux"
[2026-01-08 09:03:58] VERSION="7 (Core)"
[2026-01-08 09:03:58] ID="centos"
[2026-01-08 09:03:58] ID_LIKE="rhel fedora"
[2026-01-08 09:03:58] VERSION_ID="7"
[2026-01-08 09:03:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 09:03:58] ANSI_COLOR="0;31"
[2026-01-08 09:03:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 09:03:58] HOME_URL="https://www.centos.org/"
[2026-01-08 09:03:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 09:03:58] 
[2026-01-08 09:03:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 09:03:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 09:03:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 09:03:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 09:03:58] 
[2026-01-08 09:03:58] 2026-01-08 08:02:53,441 | INFO     | ***************************************
[2026-01-08 09:03:58] 2026-01-08 08:02:53,944 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-08 09:03:58] 2026-01-08 08:02:54,231 | INFO     | sufficient remaining disk space (497508417536 B)
[2026-01-08 09:03:58] 2026-01-08 08:02:54,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 09:03:58] 2026-01-08 08:02:54,232 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 09:03:58] 2026-01-08 08:02:54,232 | INFO     | update_server=False
[2026-01-08 09:03:58] 2026-01-08 08:02:54,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 09:03:58] 2026-01-08 08:02:54,389 | INFO     | all job control threads have been joined
[2026-01-08 09:03:58] 2026-01-08 08:02:54,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 09:03:58] 2026-01-08 08:02:54,646 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 09:03:58] 2026-01-08 08:02:54,646 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 09:03:58] 2026-01-08 08:02:54,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 09:03:58] 2026-01-08 08:02:54,646 | INFO     | will abort loop
[2026-01-08 09:03:58] 2026-01-08 08:02:54,782 | INFO     | all data control threads have been joined
[2026-01-08 09:03:58] 2026-01-08 08:02:55,238 | INFO     | [job] retrieve thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,395 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,395 | INFO     | [job] control thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,427 | INFO     | [job] validate thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,493 | INFO     | all payload control threads have been joined
[2026-01-08 09:03:58] 2026-01-08 08:02:55,652 | INFO     | [job] job monitor thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,654 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,788 | INFO     | [data] control thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,825 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:55,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 09:03:58] 2026-01-08 08:02:55,866 | INFO     | [data] copytool_in thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:56,198 | INFO     | [payload] failed_post thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:56,499 | INFO     | [payload] control thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:56,596 | INFO     | [payload] validate_post thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:56,629 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:56,644 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 09:03:58] 2026-01-08 08:02:56,649 | INFO     | [data] copytool_out thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:02:56,836 | INFO     | [job] queue monitor thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:03:00,653 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 09:03:58] 2026-01-08 08:03:24,086 | INFO     | PID=9085 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 09:03:58] 2026-01-08 08:03:24,086 | INFO     | .. there are 2 such processes running
[2026-01-08 09:03:58] 2026-01-08 08:03:24,087 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 09:03:58] 2026-01-08 08:03:24,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 09:03:58] 2026-01-08 08:03:24,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 09:03:58] 2026-01-08 08:03:46,982 | INFO     | [monitor] cgroup control has ended
[2026-01-08 09:03:58] 2026-01-08 08:03:47,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452139415360)>', '<ExcThread(monitor, started 140451822671616)>']
[2026-01-08 09:03:58] 2026-01-08 08:03:48,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 09:03:58] 2026-01-08 08:03:48,236 | INFO     | [monitor] control thread has ended
[2026-01-08 09:03:58] 2026-01-08 08:03:52,748 | INFO     | all workflow threads have been joined
[2026-01-08 09:03:58] 2026-01-08 08:03:52,748 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 09:03:58] 2026-01-08 08:03:52,748 | INFO     | traces error code: 0
[2026-01-08 09:03:58] 2026-01-08 08:03:52,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 09:03:58] 2026-01-08 08:03:53,148 [wrapper] ==== pilot stdout END ====
[2026-01-08 09:03:58] 2026-01-08 08:03:53,220 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 09:03:58] 2026-01-08 08:03:53,333 [wrapper] pilotpid: 9085
[2026-01-08 09:03:58] 2026-01-08 08:03:53,451 [wrapper] Pilot exit status: 0
[2026-01-08 09:03:58] 2026-01-08 08:03:54,002 [wrapper] pandaids: 6962317235
[2026-01-08 09:03:58] 2026-01-08 08:03:55,073 [wrapper] cleanup supervisor_pilot 14835 9086
[2026-01-08 09:03:58] 2026-01-08 08:03:55,187 [wrapper] Test setup, not cleaning
[2026-01-08 09:03:58] 2026-01-08 08:03:55,249 [wrapper] apfmon messages muted
[2026-01-08 09:03:58] 2026-01-08 08:03:55,312 [wrapper] ==== wrapper stdout END ====
[2026-01-08 09:03:58] 2026-01-08 08:03:55,404 [wrapper] ==== wrapper stderr END ====
[2026-01-08 09:03:58]  *** Error codes and diagnostics ***
[2026-01-08 09:03:58]     "exeErrorCode": 0,
[2026-01-08 09:03:58]     "exeErrorDiag": "",
[2026-01-08 09:03:58]     "pilotErrorCode": 0,
[2026-01-08 09:03:58]     "pilotErrorDiag": "",
[2026-01-08 09:03:58]  *** Listing of results directory ***
[2026-01-08 09:03:58] total 446284
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc    579449 Jan  7 21:55 pilot3.tar.gz
[2026-01-08 09:03:58] -rwx------. 1 boinc boinc     36322 Jan  7 21:56 runpilot2-wrapper.sh
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc      5112 Jan  7 21:59 queuedata.json
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc       100 Jan  8 02:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 09:03:58] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 02:45 run_atlas
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc       105 Jan  8 02:45 job.xml
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc      6391 Jan  8 02:45 init_data.xml
[2026-01-08 09:03:58] -rw-r--r--. 2 boinc boinc 225144946 Jan  8 02:45 EVNT.47898824._000527.pool.root.1
[2026-01-08 09:03:58] -rw-r--r--. 2 boinc boinc     15847 Jan  8 02:45 start_atlas.sh
[2026-01-08 09:03:58] drwxrwx--x. 2 boinc boinc        68 Jan  8 02:45 shared
[2026-01-08 09:03:58] -rw-r--r--. 2 boinc boinc    592401 Jan  8 02:45 input.tar.gz
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc         0 Jan  8 02:45 boinc_lockfile
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc      2518 Jan  8 02:47 pandaJob.out
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc    989843 Jan  8 02:54 agis_schedconf.cvmfs.json
[2026-01-08 09:03:58] drwx------. 5 boinc boinc      4096 Jan  8 02:54 pilot3
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc 220975152 Jan  8 08:59 HITS.47898826._012474.pool.root.1
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc       531 Jan  8 08:59 boinc_task_state.xml
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc      1013 Jan  8 09:00 memory_monitor_summary.json
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc   1516240 Jan  8 09:00 agis_ddmendpoints.agis.ALL.json
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc    553926 Jan  8 09:00 log.47898826._012474.job.log.tgz.1
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc      7775 Jan  8 09:02 heartbeat.json
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc        95 Jan  8 09:03 pilot_heartbeat.json
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc      8192 Jan  8 09:03 boinc_mmap_file
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc        28 Jan  8 09:03 wrapper_checkpoint.txt
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc      5070 Jan  8 09:03 pilotlog.txt
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc   2932946 Jan  8 09:03 log.47898826._012474.job.log.1
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc       357 Jan  8 09:03 output.list
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc       620 Jan  8 09:03 runtime_log
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc   3502080 Jan  8 09:03 result.tar.gz
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc      8833 Jan  8 09:03 runtime_log.err
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc       657 Jan  8 09:03 cXBNDmAlpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcddKDmJHbWSn.diag
[2026-01-08 09:03:58] -rw-r--r--. 1 boinc boinc     20683 Jan  8 09:03 stderr.txt
[2026-01-08 09:03:58] HITS file was successfully produced:
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc 220975152 Jan  8 08:59 shared/HITS.pool.root.1
[2026-01-08 09:03:58]  *** Contents of shared directory: ***
[2026-01-08 09:03:58] total 439688
[2026-01-08 09:03:58] -rw-r--r--. 2 boinc boinc 225144946 Jan  8 02:45 ATLAS.root_0
[2026-01-08 09:03:58] -rw-r--r--. 2 boinc boinc     15847 Jan  8 02:45 start_atlas.sh
[2026-01-08 09:03:58] -rw-r--r--. 2 boinc boinc    592401 Jan  8 02:45 input.tar.gz
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc 220975152 Jan  8 08:59 HITS.pool.root.1
[2026-01-08 09:03:58] -rw-------. 1 boinc boinc   3502080 Jan  8 09:03 result.tar.gz
09:04:00 (5102): run_atlas exited; CPU time 81008.087573
09:04:00 (5102): called boinc_finish(0)

</stderr_txt>
]]>

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