Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:37:41 (1676243): wrapper (7.7.26015): starting
05:37:41 (1676243): wrapper: running run_atlas (--nthreads 3)
[2026-01-08 05:37:41] Arguments: --nthreads 3
[2026-01-08 05:37:41] Threads: 3
[2026-01-08 05:37:41] Checking for CVMFS
[2026-01-08 05:37:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:37:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:37:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:37:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:37:42] 2.9.2.0 1566360 444 61188 154891 0 57 22528155 36864001 0 130560 0 286197 99.982 19355 17627 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 05:37:42] CVMFS is ok
[2026-01-08 05:37:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 05:37:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 05:37:42] Further information can be found at the LHC@home message board.
[2026-01-08 05:37:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:37:42] Checking for apptainer binary...
[2026-01-08 05:37:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:37:42] Running /usr/bin/apptainer --version
[2026-01-08 05:37:42] apptainer version 1.4.1-1.1
[2026-01-08 05:37:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:37:42] magicA161a
[2026-01-08 05:37:42] apptainer works
[2026-01-08 05:37:42] Set ATHENA_PROC_NUMBER=3
[2026-01-08 05:37:42] Set ATHENA_CORE_NUMBER=3
[2026-01-08 05:37:42] Starting ATLAS job with PandaID=6962316284
[2026-01-08 05:37:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 07:26:59]  *** The last 200 lines of the pilot log: ***
[2026-01-08 07:26:59] 2026-01-08 06:26:07,318 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 07:26:59] 2026-01-08 06:26:07,318 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 07:26:59] 2026-01-08 06:26:07,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 07:26:59] 2026-01-08 06:26:07,318 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 07:26:59] 2026-01-08 06:26:07,318 | INFO     | job 6962316284 has completed (purged errors)
[2026-01-08 07:26:59] 2026-01-08 06:26:07,319 | INFO     | overall cleanup function is called
[2026-01-08 07:26:59] 2026-01-08 06:26:08,325 | INFO     | --- collectZombieJob: --- 10, [1686489]
[2026-01-08 07:26:59] 2026-01-08 06:26:08,325 | INFO     | zombie collector waiting for pid 1686489
[2026-01-08 07:26:59] 2026-01-08 06:26:08,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 07:26:59] 2026-01-08 06:26:08,325 | INFO     | collected zombie processes
[2026-01-08 07:26:59] 2026-01-08 06:26:08,325 | INFO     | will attempt to kill all subprocesses of pid=1686489
[2026-01-08 07:26:59] 2026-01-08 06:26:08,368 | INFO     | process IDs to be killed: [1686489] (in reverse order)
[2026-01-08 07:26:59] 2026-01-08 06:26:08,391 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 07:26:59] 2026-01-08 06:26:08,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 07:26:59] 2026-01-08 06:26:08,392 | INFO     | did not find any defunct processes belonging to 1686489
[2026-01-08 07:26:59] 2026-01-08 06:26:08,393 | INFO     | did not find any defunct processes belonging to 1686489
[2026-01-08 07:26:59] 2026-01-08 06:26:08,393 | INFO     | ready for new job
[2026-01-08 07:26:59] 2026-01-08 06:26:08,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 07:26:59] 2026-01-08 06:26:08,394 | INFO     | ***************************************
[2026-01-08 07:26:59] 2026-01-08 06:26:08,394 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 07:26:59] 2026-01-08 06:26:08,394 | INFO     | ***************************************
[2026-01-08 07:26:59] 2026-01-08 06:26:08,394 | INFO     | 
[2026-01-08 07:26:59] 2026-01-08 06:26:08,394 | INFO     | architecture information:
[2026-01-08 07:26:59] 2026-01-08 06:26:08,395 | INFO     | executing command: cat /etc/os-release
[2026-01-08 07:26:59] 2026-01-08 06:26:08,403 | INFO     | cat /etc/os-release:
[2026-01-08 07:26:59] NAME="CentOS Linux"
[2026-01-08 07:26:59] VERSION="7 (Core)"
[2026-01-08 07:26:59] ID="centos"
[2026-01-08 07:26:59] ID_LIKE="rhel fedora"
[2026-01-08 07:26:59] VERSION_ID="7"
[2026-01-08 07:26:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 07:26:59] ANSI_COLOR="0;31"
[2026-01-08 07:26:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 07:26:59] HOME_URL="https://www.centos.org/"
[2026-01-08 07:26:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 07:26:59] 
[2026-01-08 07:26:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 07:26:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 07:26:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 07:26:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 07:26:59] 
[2026-01-08 07:26:59] 2026-01-08 06:26:08,403 | INFO     | ***************************************
[2026-01-08 07:26:59] 2026-01-08 06:26:08,907 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 07:26:59] 2026-01-08 06:26:08,919 | INFO     | sufficient remaining disk space (383348899840 B)
[2026-01-08 07:26:59] 2026-01-08 06:26:08,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 07:26:59] 2026-01-08 06:26:08,919 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 07:26:59] 2026-01-08 06:26:08,919 | INFO     | update_server=False
[2026-01-08 07:26:59] 2026-01-08 06:26:08,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 07:26:59] 2026-01-08 06:26:08,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 07:26:59] 2026-01-08 06:26:08,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 07:26:59] 2026-01-08 06:26:08,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 07:26:59] 2026-01-08 06:26:09,445 | INFO     | all data control threads have been joined
[2026-01-08 07:26:59] 2026-01-08 06:26:09,525 | INFO     | all job control threads have been joined
[2026-01-08 07:26:59] 2026-01-08 06:26:09,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 07:26:59] 2026-01-08 06:26:09,710 | INFO     | aborting loop
[2026-01-08 07:26:59] 2026-01-08 06:26:09,820 | INFO     | all payload control threads have been joined
[2026-01-08 07:26:59] 2026-01-08 06:26:09,924 | INFO     | [job] retrieve thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:09,924 | INFO     | [job] queue monitor thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:09,925 | INFO     | [data] copytool_in thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,127 | INFO     | [payload] validate_post thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,343 | INFO     | [payload] failed_post thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,451 | INFO     | [data] control thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,531 | INFO     | [job] control thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,543 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,545 | INFO     | [job] validate thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,562 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,716 | INFO     | [job] job monitor thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,825 | INFO     | [payload] control thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:10,996 | INFO     | [data] copytool_out thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:11,000 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:11,348 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:12,952 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 07:26:59] 2026-01-08 06:26:39,018 | INFO     | PID=1679969 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 07:26:59] 2026-01-08 06:26:39,018 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 07:26:59] 2026-01-08 06:26:39,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 07:26:59] 2026-01-08 06:26:39,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 07:26:59] 2026-01-08 06:26:54,316 | INFO     | [monitor] cgroup control has ended
[2026-01-08 07:26:59] 2026-01-08 06:26:54,473 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623160297280)>', '<ExcThread(monitor, started 139622357112576)>']
[2026-01-08 07:26:59] 2026-01-08 06:26:55,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 07:26:59] 2026-01-08 06:26:55,103 | INFO     | [monitor] control thread has ended
[2026-01-08 07:26:59] 2026-01-08 06:26:59,498 | INFO     | all workflow threads have been joined
[2026-01-08 07:26:59] 2026-01-08 06:26:59,498 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 07:26:59] 2026-01-08 06:26:59,499 | INFO     | traces error code: 0
[2026-01-08 07:26:59] 2026-01-08 06:26:59,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 07:26:59] 2026-01-08 06:26:59,548 [wrapper] ==== pilot stdout END ====
[2026-01-08 07:26:59] 2026-01-08 06:26:59,551 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 07:26:59] 2026-01-08 06:26:59,553 [wrapper] pilotpid: 1679969
[2026-01-08 07:26:59] 2026-01-08 06:26:59,555 [wrapper] Pilot exit status: 0
[2026-01-08 07:26:59] 2026-01-08 06:26:59,562 [wrapper] pandaids: 6962316284
[2026-01-08 07:26:59] 2026-01-08 06:26:59,579 [wrapper] cleanup supervisor_pilot 1701136 1679970
[2026-01-08 07:26:59] 2026-01-08 06:26:59,581 [wrapper] Test setup, not cleaning
[2026-01-08 07:26:59] 2026-01-08 06:26:59,584 [wrapper] apfmon messages muted
[2026-01-08 07:26:59] 2026-01-08 06:26:59,586 [wrapper] ==== wrapper stdout END ====
[2026-01-08 07:26:59] 2026-01-08 06:26:59,588 [wrapper] ==== wrapper stderr END ====
[2026-01-08 07:26:59]  *** Error codes and diagnostics ***
[2026-01-08 07:26:59]     "exeErrorCode": 0,
[2026-01-08 07:26:59]     "exeErrorDiag": "",
[2026-01-08 07:26:59]     "pilotErrorCode": 0,
[2026-01-08 07:26:59]     "pilotErrorDiag": "",
[2026-01-08 07:26:59]  *** Listing of results directory ***
[2026-01-08 07:26:59] total 432964
[2026-01-08 07:26:59] -rwx------ 1 boinc boinc     36322 Jan  7 21:55 runpilot2-wrapper.sh
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc    579449 Jan  7 21:55 pilot3.tar.gz
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc      5112 Jan  7 21:56 queuedata.json
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc       100 Jan  8 05:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 07:26:59] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 05:37 run_atlas
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc       105 Jan  8 05:37 job.xml
[2026-01-08 07:26:59] -rw-r--r-- 2 boinc boinc 223413250 Jan  8 05:37 EVNT.47898824._000473.pool.root.1
[2026-01-08 07:26:59] -rw-r--r-- 2 boinc boinc    592392 Jan  8 05:37 input.tar.gz
[2026-01-08 07:26:59] -rw-r--r-- 2 boinc boinc     15847 Jan  8 05:37 start_atlas.sh
[2026-01-08 07:26:59] drwxrwx--x 2 boinc boinc      4096 Jan  8 05:37 shared
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc         0 Jan  8 05:37 boinc_setup_complete
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc      6447 Jan  8 05:37 init_data.xml
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc         0 Jan  8 05:37 boinc_lockfile
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc      2518 Jan  8 05:37 pandaJob.out
[2026-01-08 07:26:59] -rw------- 1 boinc boinc    989835 Jan  8 05:37 agis_schedconf.cvmfs.json
[2026-01-08 07:26:59] -rw------- 1 boinc boinc   1516240 Jan  8 05:37 agis_ddmendpoints.agis.ALL.json
[2026-01-08 07:26:59] drwx------ 5 boinc boinc      4096 Jan  8 05:37 pilot3
[2026-01-08 07:26:59] -rw------- 1 boinc boinc 213596263 Jan  8 07:25 HITS.47898826._012132.pool.root.1
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc       529 Jan  8 07:25 boinc_task_state.xml
[2026-01-08 07:26:59] -rw------- 1 boinc boinc      1011 Jan  8 07:25 memory_monitor_summary.json
[2026-01-08 07:26:59] -rw------- 1 boinc boinc    280938 Jan  8 07:26 log.47898826._012132.job.log.tgz.1
[2026-01-08 07:26:59] -rw------- 1 boinc boinc      7751 Jan  8 07:26 heartbeat.json
[2026-01-08 07:26:59] -rw------- 1 boinc boinc        95 Jan  8 07:26 pilot_heartbeat.json
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc      8192 Jan  8 07:26 boinc_mmap_file
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc        27 Jan  8 07:26 wrapper_checkpoint.txt
[2026-01-08 07:26:59] -rw------- 1 boinc boinc      4752 Jan  8 07:26 pilotlog.txt
[2026-01-08 07:26:59] -rw------- 1 boinc boinc    941666 Jan  8 07:26 log.47898826._012132.job.log.1
[2026-01-08 07:26:59] -rw------- 1 boinc boinc       357 Jan  8 07:26 output.list
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc       620 Jan  8 07:26 runtime_log
[2026-01-08 07:26:59] -rw------- 1 boinc boinc   1239040 Jan  8 07:26 result.tar.gz
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc      8917 Jan  8 07:26 runtime_log.err
[2026-01-08 07:26:59] -rw------- 1 boinc boinc       663 Jan  8 07:26 2dQLDmDkpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWdiKDmIeRcjn.diag
[2026-01-08 07:26:59] -rw-r--r-- 1 boinc boinc     11215 Jan  8 07:26 stderr.txt
[2026-01-08 07:26:59] HITS file was successfully produced:
[2026-01-08 07:26:59] -rw------- 1 boinc boinc 213596263 Jan  8 07:25 shared/HITS.pool.root.1
[2026-01-08 07:26:59]  *** Contents of shared directory: ***
[2026-01-08 07:26:59] total 428588
[2026-01-08 07:26:59] -rw-r--r-- 2 boinc boinc 223413250 Jan  8 05:37 ATLAS.root_0
[2026-01-08 07:26:59] -rw-r--r-- 2 boinc boinc    592392 Jan  8 05:37 input.tar.gz
[2026-01-08 07:26:59] -rw-r--r-- 2 boinc boinc     15847 Jan  8 05:37 start_atlas.sh
[2026-01-08 07:26:59] -rw------- 1 boinc boinc 213596263 Jan  8 07:25 HITS.pool.root.1
[2026-01-08 07:26:59] -rw------- 1 boinc boinc   1239040 Jan  8 07:26 result.tar.gz
07:27:00 (1676243): run_atlas exited; CPU time 18855.479895
07:27:00 (1676243): called boinc_finish(0)

</stderr_txt>
]]>

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