Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:24:48 (28802): wrapper (7.7.26015): starting
04:24:48 (28802): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 04:24:48] Arguments: --nthreads 8
[2026-01-08 04:24:48] Threads: 8
[2026-01-08 04:24:48] Checking for CVMFS
[2026-01-08 04:24:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 04:24:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 04:24:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 04:24:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 04:24:49] 2.11.0.0 7780 50082 67956 154889 1 11 3553976 4096001 5502 130560 1 4143935 99.653 2834210 503 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-08 04:24:49] CVMFS is ok
[2026-01-08 04:24:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 04:24:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 04:24:49] Further information can be found at the LHC@home message board.
[2026-01-08 04:24:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 04:24:49] Checking for apptainer binary...
[2026-01-08 04:24:49] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-08 04:24:49] apptainer is not installed, using version from CVMFS
[2026-01-08 04:24:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 04:24:49] WARNING: Environment variable TMPDIR already has value [/tmp/job_11003816/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node043
[2026-01-08 04:24:49] apptainer works
[2026-01-08 04:24:49] Set ATHENA_PROC_NUMBER=8
[2026-01-08 04:24:49] Set ATHENA_CORE_NUMBER=8
[2026-01-08 04:24:49] Starting ATLAS job with PandaID=6962314459
[2026-01-08 04:24:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11003816/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 05:31:06]  *** The last 200 lines of the pilot log: ***
[2026-01-08 05:31:06]  is_tar=False
[2026-01-08 05:31:06]  lfn=log.47898826._011220.job.log.tgz.1
[2026-01-08 05:31:06]  mtime=0
[2026-01-08 05:31:06]  protocol_id=None
[2026-01-08 05:31:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 05:31:06]  replicas=None
[2026-01-08 05:31:06]  scope=mc23_13p6TeV
[2026-01-08 05:31:06]  status=None
[2026-01-08 05:31:06]  status_code=0
[2026-01-08 05:31:06]  storage_token=
[2026-01-08 05:31:06]  surl=/tmp/job_11003816/atlas/pilot/slots/0/PanDA_Pilot-6962314459/log.47898826._011220.job.log.tgz.1
[2026-01-08 05:31:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/f0/log.47898826._011220.job.log.tgz.1
[2026-01-08 05:31:06]  workdir=None
[2026-01-08 05:31:06] ]
[2026-01-08 05:31:06] 2026-01-08 04:30:01,347 | INFO     | transferring file log.47898826._011220.job.log.tgz.1 from /tmp/job_11003816/atlas/pilot/slots/0/PanDA_Pilot-6962314459/log.47898826._011220.job.log.tgz.1 to /tmp/j
[2026-01-08 05:31:06] 2026-01-08 04:30:01,347 | INFO     | executing command: /usr/bin/env mv /tmp/job_11003816/atlas/pilot/slots/0/PanDA_Pilot-6962314459/log.47898826._011220.job.log.tgz.1 /tmp/job_11003816/atlas/pilot/sl
[2026-01-08 05:31:06] 2026-01-08 04:30:01,355 | INFO     | adding to output.list: log.47898826._011220.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/f0/log.47898826._011220.job.log.tg
[2026-01-08 05:31:06] 2026-01-08 04:30:01,355 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 05:31:06] 2026-01-08 04:30:01,355 | INFO     | summary of transferred files:
[2026-01-08 05:31:06] 2026-01-08 04:30:01,355 | INFO     |  -- lfn=log.47898826._011220.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 05:31:06] 2026-01-08 04:30:01,355 | INFO     | stage-out finished correctly
[2026-01-08 05:31:06] 2026-01-08 04:30:02,083 | INFO     | time since job start (3909s) is within the limit (174528.0s)
[2026-01-08 05:31:06] 2026-01-08 04:30:04,089 | INFO     | time since job start (3911s) is within the limit (174528.0s)
[2026-01-08 05:31:06] 2026-01-08 04:30:04,301 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | job 6962314459 has state=finished
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | preparing for final server update for job 6962314459 in state='finished'
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | this job has now completed (state=finished)
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | log transfer has been attempted: DONE
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | job 6962314459 has finished - writing final server update
[2026-01-08 05:31:06] 2026-01-08 04:30:05,744 | INFO     | total number of processed events: 400 (read)
[2026-01-08 05:31:06] 2026-01-08 04:30:05,745 | INFO     | executing command: lscpu
[2026-01-08 05:31:06] 2026-01-08 04:30:05,776 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 05:31:06] 2026-01-08 04:30:06,094 | INFO     | time since job start (3913s) is within the limit (174528.0s)
[2026-01-08 05:31:06] 2026-01-08 04:30:07,201 | WARNING  | process 9472 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 05:31:06] 2026-01-08 04:30:07,201 | INFO     | using path: /tmp/job_11003816/atlas/pilot/slots/0/PanDA_Pilot-6962314459/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 05:31:06] 2026-01-08 04:30:07,289 | INFO     | number of running child processes to parent process 9472: 1
[2026-01-08 05:31:06] 2026-01-08 04:30:07,289 | INFO     | maximum number of monitored processes: 6
[2026-01-08 05:31:06] 2026-01-08 04:30:08,099 | INFO     | time since job start (3915s) is within the limit (174528.0s)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,194 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 05:31:06] 2026-01-08 04:30:09,198 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2365.2826718750002
[2026-01-08 05:31:06] 2026-01-08 04:30:09,203 | INFO     | using path: /tmp/job_11003816/atlas/pilot/slots/0/PanDA_Pilot-6962314459/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,203 | INFO     | extracted standard info from prmon json
[2026-01-08 05:31:06] 2026-01-08 04:30:09,203 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 05:31:06] 2026-01-08 04:30:09,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 05:31:06] 2026-01-08 04:30:09,204 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 05:31:06] 2026-01-08 04:30:09,204 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 05:31:06] 2026-01-08 04:30:09,204 | INFO     | fitting pss+swap vs Time
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | sum of square deviations: 57407588.0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | sum of deviations: -5671551067.0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | mean x: 1767844724.0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | mean y: 2851452.6140350876
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | intersect: 174656098174.85083
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | chi2: 0.10873744565346181
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | current memory leak: -98.79 B/s (using 57 data points, chi2=0.11)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | could have reported an average CPU frequency of 2895 MHz (6 samples)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | ..............................
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . Timing measurements:
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . get job = 0 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . initial setup = 1 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . payload setup = 2 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . stage-in = 0 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . payload execution = 3888 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . stage-out = 0 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | . log creation = 0 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,205 | INFO     | ..............................
[2026-01-08 05:31:06] 2026-01-08 04:30:09,254 | INFO     | 
[2026-01-08 05:31:06] 2026-01-08 04:30:09,254 | INFO     | job summary report
[2026-01-08 05:31:06] 2026-01-08 04:30:09,254 | INFO     | --------------------------------------------------
[2026-01-08 05:31:06] 2026-01-08 04:30:09,254 | INFO     | PanDA job id: 6962314459
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | task id: 47898826
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | errors: (none)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | pilot state: finished 
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | transexitcode: 0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | exeerrorcode: 0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | exeerrordiag: 
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | exitcode: 0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | exitmsg: OK
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | cpuconsumptiontime: 28932 s
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | nevents: 400
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | neventsw: 0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | pid: 9472
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | pgrp: 9472
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | corecount: 8
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | event service: False
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | sizes: {0: 2284090, 2: 2284352, 11: 2284380, 3894: 2310388, 3895: 2319416, 3898: 2319472, 3903: 2319794}
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | --------------------------------------------------
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | 
[2026-01-08 05:31:06] 2026-01-08 04:30:09,255 | INFO     | executing command: ls -lF /tmp/job_11003816/atlas/pilot/slots/0
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | job 6962314459 has completed (purged errors)
[2026-01-08 05:31:06] 2026-01-08 04:30:09,264 | INFO     | overall cleanup function is called
[2026-01-08 05:31:06] 2026-01-08 04:30:10,270 | INFO     | --- collectZombieJob: --- 10, [9472]
[2026-01-08 05:31:06] 2026-01-08 04:30:10,270 | INFO     | zombie collector waiting for pid 9472
[2026-01-08 05:31:06] 2026-01-08 04:30:10,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 05:31:06] 2026-01-08 04:30:10,270 | INFO     | collected zombie processes
[2026-01-08 05:31:06] 2026-01-08 04:30:10,270 | INFO     | will attempt to kill all subprocesses of pid=9472
[2026-01-08 05:31:06] 2026-01-08 04:30:10,363 | INFO     | process IDs to be killed: [9472] (in reverse order)
[2026-01-08 05:31:06] 2026-01-08 04:30:10,393 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 05:31:06] 2026-01-08 04:30:10,394 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 05:31:06] 2026-01-08 04:30:10,397 | INFO     | did not find any defunct processes belonging to 9472
[2026-01-08 05:31:06] 2026-01-08 04:30:10,400 | INFO     | did not find any defunct processes belonging to 9472
[2026-01-08 05:31:06] 2026-01-08 04:30:10,400 | INFO     | ready for new job
[2026-01-08 05:31:06] 2026-01-08 04:30:10,400 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 05:31:06] 2026-01-08 04:30:10,401 | INFO     | ***************************************
[2026-01-08 05:31:06] 2026-01-08 04:30:10,401 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 05:31:06] 2026-01-08 04:30:10,401 | INFO     | ***************************************
[2026-01-08 05:31:06] 2026-01-08 04:30:10,401 | INFO     | 
[2026-01-08 05:31:06] 2026-01-08 04:30:10,415 | INFO     | architecture information:
[2026-01-08 05:31:06] 2026-01-08 04:30:10,415 | INFO     | executing command: cat /etc/os-release
[2026-01-08 05:31:06] 2026-01-08 04:30:10,421 | INFO     | cat /etc/os-release:
[2026-01-08 05:31:06] NAME="CentOS Linux"
[2026-01-08 05:31:06] VERSION="7 (Core)"
[2026-01-08 05:31:06] ID="centos"
[2026-01-08 05:31:06] ID_LIKE="rhel fedora"
[2026-01-08 05:31:06] VERSION_ID="7"
[2026-01-08 05:31:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 05:31:06] ANSI_COLOR="0;31"
[2026-01-08 05:31:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 05:31:06] HOME_URL="https://www.centos.org/"
[2026-01-08 05:31:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 05:31:06] 
[2026-01-08 05:31:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 05:31:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 05:31:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 05:31:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 05:31:06] 
[2026-01-08 05:31:06] 2026-01-08 04:30:10,421 | INFO     | ***************************************
[2026-01-08 05:31:06] 2026-01-08 04:30:10,924 | INFO     | executing command: df -mP /tmp/job_11003816/atlas/pilot/slots/0
[2026-01-08 05:31:06] 2026-01-08 04:30:10,930 | INFO     | sufficient remaining disk space (225990148096 B)
[2026-01-08 05:31:06] 2026-01-08 04:30:10,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 05:31:06] 2026-01-08 04:30:10,930 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 05:31:06] 2026-01-08 04:30:10,930 | INFO     | update_server=False
[2026-01-08 05:31:06] 2026-01-08 04:30:10,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 05:31:06] 2026-01-08 04:30:10,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:31:06] 2026-01-08 04:30:10,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 05:31:06] 2026-01-08 04:30:10,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:31:06] 2026-01-08 04:30:10,931 | INFO     | aborting loop
[2026-01-08 05:31:06] 2026-01-08 04:30:11,133 | INFO     | all payload control threads have been joined
[2026-01-08 05:31:06] 2026-01-08 04:30:11,470 | INFO     | all data control threads have been joined
[2026-01-08 05:31:06] 2026-01-08 04:30:11,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 05:31:06] 2026-01-08 04:30:11,936 | INFO     | [job] retrieve thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:11,936 | INFO     | [job] queue monitor thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:11,936 | INFO     | [job] job monitor thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:11,963 | INFO     | [payload] failed_post thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,079 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,138 | INFO     | [payload] control thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,263 | INFO     | [job] validate thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,276 | INFO     | all job control threads have been joined
[2026-01-08 05:31:06] 2026-01-08 04:30:12,384 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,475 | INFO     | [data] control thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,531 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,579 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,852 | INFO     | [payload] validate_post thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:12,951 | INFO     | [data] copytool_in thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:13,281 | INFO     | [job] control thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:13,923 | INFO     | [data] copytool_out thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:14,936 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 05:31:06] 2026-01-08 04:30:41,281 | INFO     | PID=1162 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 05:31:06] 2026-01-08 04:30:41,281 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 05:31:06] 2026-01-08 04:30:41,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 05:31:06] 2026-01-08 04:30:41,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 05:31:06] 2026-01-08 04:30:59,904 | INFO     | [monitor] cgroup control has ended
[2026-01-08 05:31:06] 2026-01-08 04:31:00,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-08 05:31:06] 2026-01-08 04:31:01,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 05:31:06] 2026-01-08 04:31:01,382 | INFO     | [monitor] control thread has ended
[2026-01-08 05:31:06] 2026-01-08 04:31:05,911 | INFO     | all workflow threads have been joined
[2026-01-08 05:31:06] 2026-01-08 04:31:05,911 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 05:31:06] 2026-01-08 04:31:05,911 | INFO     | traces error code: 0
[2026-01-08 05:31:06] 2026-01-08 04:31:05,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 05:31:06] 2026-01-08 04:31:05,962 [wrapper] ==== pilot stdout END ====
[2026-01-08 05:31:06] 2026-01-08 04:31:05,964 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 05:31:06] 2026-01-08 04:31:05,965 [wrapper] pilotpid: 1162
[2026-01-08 05:31:06] 2026-01-08 04:31:05,966 [wrapper] Pilot exit status: 0
[2026-01-08 05:31:06] 2026-01-08 04:31:05,970 [wrapper] pandaids: 6962314459
[2026-01-08 05:31:06] 2026-01-08 04:31:05,990 [wrapper] cleanup supervisor_pilot 10487 1163
[2026-01-08 05:31:06] 2026-01-08 04:31:05,991 [wrapper] Test setup, not cleaning
[2026-01-08 05:31:06] 2026-01-08 04:31:05,992 [wrapper] apfmon messages muted
[2026-01-08 05:31:06] 2026-01-08 04:31:05,993 [wrapper] ==== wrapper stdout END ====
[2026-01-08 05:31:06] 2026-01-08 04:31:05,994 [wrapper] ==== wrapper stderr END ====
[2026-01-08 05:31:06]  *** Error codes and diagnostics ***
[2026-01-08 05:31:06]     "exeErrorCode": 0,
[2026-01-08 05:31:06]     "exeErrorDiag": "",
[2026-01-08 05:31:06]     "pilotErrorCode": 0,
[2026-01-08 05:31:06]     "pilotErrorDiag": "",
[2026-01-08 05:31:06]  *** Listing of results directory ***
[2026-01-08 05:31:06] total 443156
[2026-01-08 05:31:06] -rwx------ 1 mf493845 unix-user     36322 Jan  7 21:54 runpilot2-wrapper.sh
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user    579449 Jan  7 21:55 pilot3.tar.gz
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      5112 Jan  7 21:56 queuedata.json
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user       100 Jan  8 03:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 05:31:06] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  8 03:27 run_atlas
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user       105 Jan  8 03:27 job.xml
[2026-01-08 05:31:06] -rw-r--r-- 2 mf493845 unix-user 223857378 Jan  8 04:24 EVNT.47898824._000277.pool.root.1
[2026-01-08 05:31:06] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  8 04:24 start_atlas.sh
[2026-01-08 05:31:06] drwxrwx--x 2 mf493845 unix-user       100 Jan  8 04:24 shared
[2026-01-08 05:31:06] -rw-r--r-- 2 mf493845 unix-user    592394 Jan  8 04:24 input.tar.gz
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      6390 Jan  8 04:24 init_data.xml
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user         0 Jan  8 04:24 boinc_setup_complete
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      8192 Jan  8 04:24 boinc_mmap_file
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user         0 Jan  8 04:24 boinc_lockfile
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      2516 Jan  8 04:24 pandaJob.out
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user    989835 Jan  8 04:24 agis_schedconf.cvmfs.json
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user   1516240 Jan  8 04:24 agis_ddmendpoints.agis.ALL.json
[2026-01-08 05:31:06] drwx------ 5 mf493845 unix-user       440 Jan  8 04:24 pilot3
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user 224244488 Jan  8 05:29 HITS.47898826._011220.pool.root.1
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user        95 Jan  8 05:29 pilot_heartbeat.json
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      1022 Jan  8 05:29 memory_monitor_summary.json
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user    304819 Jan  8 05:30 log.47898826._011220.job.log.tgz.1
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      7778 Jan  8 05:30 heartbeat.json
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      4759 Jan  8 05:31 pilotlog.txt
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user    594867 Jan  8 05:31 log.47898826._011220.job.log.1
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user       357 Jan  8 05:31 output.list
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user       620 Jan  8 05:31 runtime_log
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user    921600 Jan  8 05:31 result.tar.gz
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user       644 Jan  8 05:31 t4SLDmZjpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEbiKDmbEKIkn.diag
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user      9220 Jan  8 05:31 runtime_log.err
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user     22107 Jan  8 05:31 stderr.txt
[2026-01-08 05:31:06] HITS file was successfully produced:
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user 224244488 Jan  8 05:29 shared/HITS.pool.root.1
[2026-01-08 05:31:06]  *** Contents of shared directory: ***
[2026-01-08 05:31:06] total 439100
[2026-01-08 05:31:06] -rw-r--r-- 2 mf493845 unix-user 223857378 Jan  8 04:24 ATLAS.root_0
[2026-01-08 05:31:06] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  8 04:24 start_atlas.sh
[2026-01-08 05:31:06] -rw-r--r-- 2 mf493845 unix-user    592394 Jan  8 04:24 input.tar.gz
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user 224244488 Jan  8 05:29 HITS.pool.root.1
[2026-01-08 05:31:06] -rw------- 1 mf493845 unix-user    921600 Jan  8 05:31 result.tar.gz
05:31:07 (28802): run_atlas exited; CPU time 28987.648741
05:31:07 (28802): called boinc_finish(0)

</stderr_txt>
]]>

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