Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:19 (857752): wrapper (7.7.26015): starting
00:01:19 (857752): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 00:01:20] Arguments: --nthreads 8
[2026-01-08 00:01:20] Threads: 8
[2026-01-08 00:01:20] Checking for CVMFS
[2026-01-08 00:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 00:01:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 00:01:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 00:01:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 00:01:20] 2.13.3.0 8454 20637 176316 154891 2 26 29254975 39288832 6821 16776704 0 5414135 99.221 10882978 33975 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 00:01:20] CVMFS is ok
[2026-01-08 00:01:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 00:01:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 00:01:20] Further information can be found at the LHC@home message board.
[2026-01-08 00:01:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 00:01:20] Checking for apptainer binary...
[2026-01-08 00:01:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 00:01:20] Running /usr/bin/apptainer --version
[2026-01-08 00:01:20] apptainer version 1.4.5-2.el9
[2026-01-08 00:01:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 00:01:20] c-211-31.aglt2.org
[2026-01-08 00:01:20] apptainer works
[2026-01-08 00:01:20] Set ATHENA_PROC_NUMBER=8
[2026-01-08 00:01:20] Set ATHENA_CORE_NUMBER=8
[2026-01-08 00:01:20] Starting ATLAS job with PandaID=6962323516
[2026-01-08 00:01:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:12:07 (2234824): wrapper (7.7.26015): starting
16:12:07 (2234824): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 16:12:07] Arguments: --nthreads 12
[2026-01-08 16:12:07] Threads: 12
[2026-01-08 16:12:07] This job has been restarted, cleaning up previous attempt
[2026-01-08 16:12:07] Checking for CVMFS
[2026-01-08 16:12:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:12:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:12:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:12:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:12:10] 2.13.3.0 8454 21608 176568 154919 0 24 30560528 39288833 6509 16776704 0 5938260 99.285 10917174 33957 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 16:12:10] CVMFS is ok
[2026-01-08 16:12:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:12:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:12:10] Further information can be found at the LHC@home message board.
[2026-01-08 16:12:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:12:10] Checking for apptainer binary...
[2026-01-08 16:12:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:12:10] Running /usr/bin/apptainer --version
[2026-01-08 16:12:10] apptainer version 1.4.5-2.el9
[2026-01-08 16:12:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:12:12] c-211-31.aglt2.org
[2026-01-08 16:12:12] apptainer works
[2026-01-08 16:12:12] Set ATHENA_PROC_NUMBER=12
[2026-01-08 16:12:12] Set ATHENA_CORE_NUMBER=12
[2026-01-08 16:12:12] Starting ATLAS job with PandaID=6962323516
[2026-01-08 16:12:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:03:43]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:03:43] 2026-01-10 01:00:24,281 | INFO     | intersect: 1439884153.7714765
[2026-01-09 20:03:43] 2026-01-10 01:00:24,284 | INFO     | chi2: 9.390991199802237
[2026-01-09 20:03:43] 2026-01-10 01:00:24,286 | INFO     | sum of square deviations: 1342896811183.7092
[2026-01-09 20:03:43] 2026-01-10 01:00:24,377 | INFO     | sum of deviations: -536212748070.8645
[2026-01-09 20:03:43] 2026-01-10 01:00:24,378 | INFO     | mean x: 1767956688.2601228
[2026-01-09 20:03:43] 2026-01-10 01:00:24,378 | INFO     | mean y: 2700636.719018405
[2026-01-09 20:03:43] 2026-01-10 01:00:24,378 | INFO     | intersect: 708637910.8172425
[2026-01-09 20:03:43] 2026-01-10 01:00:24,380 | INFO     | chi2: 5.806085542304464
[2026-01-09 20:03:43] 2026-01-10 01:00:24,381 | INFO     | current chi2=5.806085542304464 (change=38.17387942577634 %)
[2026-01-09 20:03:43] 2026-01-10 01:00:24,383 | INFO     | sum of square deviations: 1330577351915.2551
[2026-01-09 20:03:43] 2026-01-10 01:00:24,459 | INFO     | sum of deviations: -176161673442.64508
[2026-01-09 20:03:43] 2026-01-10 01:00:24,459 | INFO     | mean x: 1767956535.7636924
[2026-01-09 20:03:43] 2026-01-10 01:00:24,494 | INFO     | mean y: 2705088.2873846153
[2026-01-09 20:03:43] 2026-01-10 01:00:24,494 | INFO     | intersect: 236773540.9524573
[2026-01-09 20:03:43] 2026-01-10 01:00:24,496 | INFO     | chi2: 3.417938751063759
[2026-01-09 20:03:43] 2026-01-10 01:00:24,496 | INFO     | current chi2=3.417938751063759 (change=41.131787911840476 %)
[2026-01-09 20:03:43] 2026-01-10 01:00:24,551 | INFO     | sum of square deviations: 1318333278782.333
[2026-01-09 20:03:43] 2026-01-10 01:00:25,428 | INFO     | sum of deviations: -175334879525.21542
[2026-01-09 20:03:43] 2026-01-10 01:00:25,428 | INFO     | mean x: 1767956383.2660494
[2026-01-09 20:03:43] 2026-01-10 01:00:25,428 | INFO     | mean y: 2705098.585185185
[2026-01-09 20:03:43] 2026-01-10 01:00:25,429 | INFO     | intersect: 237838675.54540783
[2026-01-09 20:03:43] 2026-01-10 01:00:25,431 | INFO     | chi2: 3.4178834999457193
[2026-01-09 20:03:43] 2026-01-10 01:00:25,431 | INFO     | current chi2=3.4178834999457193 (change=0.0016165040412920906 %)
[2026-01-09 20:03:43] 2026-01-10 01:00:25,431 | INFO     | right removable region: 1619
[2026-01-09 20:03:43] 2026-01-10 01:00:25,477 | INFO     | sum of square deviations: 1342895160460.1865
[2026-01-09 20:03:43] 2026-01-10 01:00:25,624 | INFO     | monitor loop #4740: job 0:6962323516 is in state 'finished'
[2026-01-09 20:03:43] 2026-01-10 01:00:25,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:03:43] 2026-01-10 01:00:26,384 | INFO     | sum of deviations: -1539896666595.8972
[2026-01-09 20:03:43] 2026-01-10 01:00:26,384 | INFO     | mean x: 1767956993.2607362
[2026-01-09 20:03:43] 2026-01-10 01:00:26,385 | INFO     | mean y: 2699065.865644172
[2026-01-09 20:03:43] 2026-01-10 01:00:26,385 | INFO     | intersect: 2030013751.9012764
[2026-01-09 20:03:43] 2026-01-10 01:00:26,432 | INFO     | chi2: 6.897687940036203
[2026-01-09 20:03:43] 2026-01-10 01:00:26,432 | INFO     | current chi2=6.897687940036203 (change=26.549947782067346 %)
[2026-01-09 20:03:43] 2026-01-10 01:00:26,435 | INFO     | sum of square deviations: 1330574249447.136
[2026-01-09 20:03:43] 2026-01-10 01:00:26,537 | INFO     | time since job start (100010s) is within the limit (174528.0s)
[2026-01-09 20:03:43] 2026-01-10 01:00:27,418 | INFO     | sum of deviations: -1608570675752.9932
[2026-01-09 20:03:43] 2026-01-10 01:00:27,419 | INFO     | mean x: 1767957145.7661538
[2026-01-09 20:03:43] 2026-01-10 01:00:27,419 | INFO     | mean y: 2699915.0473846155
[2026-01-09 20:03:43] 2026-01-10 01:00:27,419 | INFO     | intersect: 2140035747.1883202
[2026-01-09 20:03:43] 2026-01-10 01:00:27,421 | INFO     | chi2: 6.813160332153146
[2026-01-09 20:03:43] 2026-01-10 01:00:27,464 | INFO     | current chi2=6.813160332153146 (change=1.2254484200776063 %)
[2026-01-09 20:03:43] 2026-01-10 01:00:27,464 | INFO     | left removable region: 20
[2026-01-09 20:03:43] 2026-01-10 01:00:27,466 | INFO     | sum of square deviations: 1267724259071.1326
[2026-01-09 20:03:43] 2026-01-10 01:00:28,243 | INFO     | monitor loop #4741: job 0:6962323516 is in state 'finished'
[2026-01-09 20:03:43] 2026-01-10 01:00:28,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:03:43] 2026-01-10 01:00:28,338 | INFO     | sum of deviations: -576969022329.9619
[2026-01-09 20:03:43] 2026-01-10 01:00:28,338 | INFO     | mean x: 1767956962.7836149
[2026-01-09 20:03:43] 2026-01-10 01:00:28,338 | INFO     | mean y: 2710119.245778612
[2026-01-09 20:03:43] 2026-01-10 01:00:28,339 | INFO     | intersect: 807345979.9542509
[2026-01-09 20:03:43] 2026-01-10 01:00:28,340 | INFO     | chi2: 0.7183290428110676
[2026-01-09 20:03:43] 2026-01-10 01:00:28,341 | INFO     | current memory leak: -0.46 B/s (using 1599 data points, chi2=0.72)
[2026-01-09 20:03:43] 2026-01-10 01:00:28,374 | INFO     | could have reported an average CPU frequency of 2899 MHz (57 samples)
[2026-01-09 20:03:43] 2026-01-10 01:00:28,379 | INFO     | ..............................
[2026-01-09 20:03:43] 2026-01-10 01:00:28,379 | INFO     | . Timing measurements:
[2026-01-09 20:03:43] 2026-01-10 01:00:28,379 | INFO     | . get job = 0 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,379 | INFO     | . initial setup = 5 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,379 | INFO     | . payload setup = 44 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,380 | INFO     | . stage-in = 0 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,380 | INFO     | . payload execution = 99771 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,380 | INFO     | . stage-out = 18 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,380 | INFO     | . log creation = 3 s
[2026-01-09 20:03:43] 2026-01-10 01:00:28,380 | INFO     | ..............................
[2026-01-09 20:03:43] 2026-01-10 01:00:28,712 | INFO     | time since job start (100012s) is within the limit (174528.0s)
[2026-01-09 20:03:43] 2026-01-10 01:00:30,507 | INFO     | 
[2026-01-09 20:03:43] 2026-01-10 01:00:30,507 | INFO     | job summary report
[2026-01-09 20:03:43] 2026-01-10 01:00:30,507 | INFO     | --------------------------------------------------
[2026-01-09 20:03:43] 2026-01-10 01:00:30,507 | INFO     | PanDA job id: 6962323516
[2026-01-09 20:03:43] 2026-01-10 01:00:30,507 | INFO     | task id: 47898826
[2026-01-09 20:03:43] 2026-01-10 01:00:30,507 | INFO     | errors: (none)
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | pilot state: finished 
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | transexitcode: 0
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | exeerrorcode: 0
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | exeerrordiag: 
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | exitcode: 0
[2026-01-09 20:03:43] 2026-01-10 01:00:30,508 | INFO     | exitmsg: OK
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | cpuconsumptiontime: 111823 s
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | nevents: 400
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | neventsw: 0
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | pid: 2249227
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | pgrp: 2249227
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | corecount: 12
[2026-01-09 20:03:43] 2026-01-10 01:00:30,509 | INFO     | event service: False
[2026-01-09 20:03:43] 2026-01-10 01:00:30,510 | INFO     | sizes: {0: 2283798, 1: 2283997, 2: 2284025, 14: 2284025, 25: 2284053, 36: 2284081, 47: 2284527, 58: 2284555, 99822: 2352032, 99825: 2352031, 99845: 2361085, 99846:
[2026-01-09 20:03:43] 2026-01-10 01:00:30,510 | INFO     | --------------------------------------------------
[2026-01-09 20:03:43] 2026-01-10 01:00:30,510 | INFO     | 
[2026-01-09 20:03:43] 2026-01-10 01:00:30,510 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 20:03:43] 2026-01-10 01:00:30,882 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,883 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,883 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,883 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,885 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:03:43] 2026-01-10 01:00:30,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,987 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:03:43] 2026-01-10 01:00:30,987 | INFO     | job 6962323516 has completed (purged errors)
[2026-01-09 20:03:43] 2026-01-10 01:00:30,987 | INFO     | overall cleanup function is called
[2026-01-09 20:03:43] 2026-01-10 01:00:32,008 | INFO     | --- collectZombieJob: --- 10, [2249227]
[2026-01-09 20:03:43] 2026-01-10 01:00:32,008 | INFO     | zombie collector waiting for pid 2249227
[2026-01-09 20:03:43] 2026-01-10 01:00:32,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:03:43] 2026-01-10 01:00:32,008 | INFO     | collected zombie processes
[2026-01-09 20:03:43] 2026-01-10 01:00:32,033 | INFO     | will attempt to kill all subprocesses of pid=2249227
[2026-01-09 20:03:43] 2026-01-10 01:00:32,605 | INFO     | PID=2240406 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:03:43] 2026-01-10 01:00:32,605 | INFO     | .. there are 10 such processes running
[2026-01-09 20:03:43] 2026-01-10 01:00:32,705 | INFO     | process IDs to be killed: [2249227] (in reverse order)
[2026-01-09 20:03:43] 2026-01-10 01:00:33,628 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:03:43] 2026-01-10 01:00:33,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:03:43] 2026-01-10 01:00:33,654 | INFO     | did not find any defunct processes belonging to 2249227
[2026-01-09 20:03:43] 2026-01-10 01:00:33,749 | INFO     | did not find any defunct processes belonging to 2249227
[2026-01-09 20:03:43] 2026-01-10 01:00:33,750 | INFO     | ready for new job
[2026-01-09 20:03:43] 2026-01-10 01:00:33,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:03:43] 2026-01-10 01:00:33,776 | INFO     | ***************************************
[2026-01-09 20:03:43] 2026-01-10 01:00:33,777 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:03:43] 2026-01-10 01:00:33,777 | INFO     | ***************************************
[2026-01-09 20:03:43] 2026-01-10 01:00:33,777 | INFO     | 
[2026-01-09 20:03:43] 2026-01-10 01:00:33,779 | INFO     | architecture information:
[2026-01-09 20:03:43] 2026-01-10 01:00:33,783 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:03:43] 2026-01-10 01:00:33,958 | INFO     | cat /etc/os-release:
[2026-01-09 20:03:43] NAME="CentOS Linux"
[2026-01-09 20:03:43] VERSION="7 (Core)"
[2026-01-09 20:03:43] ID="centos"
[2026-01-09 20:03:43] ID_LIKE="rhel fedora"
[2026-01-09 20:03:43] VERSION_ID="7"
[2026-01-09 20:03:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:03:43] ANSI_COLOR="0;31"
[2026-01-09 20:03:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:03:43] HOME_URL="https://www.centos.org/"
[2026-01-09 20:03:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:03:43] 
[2026-01-09 20:03:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:03:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:03:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:03:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:03:43] 
[2026-01-09 20:03:43] 2026-01-10 01:00:33,958 | INFO     | ***************************************
[2026-01-09 20:03:43] 2026-01-10 01:00:34,462 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 20:03:43] 2026-01-10 01:00:34,683 | INFO     | sufficient remaining disk space (51503955968 B)
[2026-01-09 20:03:43] 2026-01-10 01:00:34,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:03:43] 2026-01-10 01:00:34,684 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:03:43] 2026-01-10 01:00:34,684 | INFO     | update_server=False
[2026-01-09 20:03:43] 2026-01-10 01:00:34,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:03:43] 2026-01-10 01:00:34,686 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:03:43] 2026-01-10 01:00:34,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:03:43] 2026-01-10 01:00:34,706 | INFO     | aborting loop
[2026-01-09 20:03:43] 2026-01-10 01:00:35,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:03:43] 2026-01-10 01:00:35,303 | INFO     | all data control threads have been joined
[2026-01-09 20:03:43] 2026-01-10 01:00:35,437 | INFO     | all job control threads have been joined
[2026-01-09 20:03:43] 2026-01-10 01:00:35,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:03:43] 2026-01-10 01:00:35,589 | INFO     | all payload control threads have been joined
[2026-01-09 20:03:43] 2026-01-10 01:00:35,706 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:35,715 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:35,716 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:35,723 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:35,733 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:35,742 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:35,965 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,309 | INFO     | [data] control thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,443 | INFO     | [job] control thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,481 | INFO     | [job] validate thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,567 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,612 | INFO     | [payload] control thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,673 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,710 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:36,782 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:00:39,305 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:03:43] 2026-01-10 01:01:00,187 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:03:43] 2026-01-10 01:01:01,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140080455452480)>', '<ExcThread(monitor, started 140080182171392)>']
[2026-01-09 20:03:43] 2026-01-10 01:01:06,844 | INFO     | all workflow threads have been joined
[2026-01-09 20:03:43] 2026-01-10 01:01:06,844 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:03:43] 2026-01-10 01:01:06,844 | INFO     | traces error code: 0
[2026-01-09 20:03:43] 2026-01-10 01:01:06,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:03:43] 2026-01-10 01:01:13,923 | INFO     | PID=2240406 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:03:43] 2026-01-10 01:01:14,199 | INFO     | .. there are 10 such processes running
[2026-01-09 20:03:43] 2026-01-10 01:01:14,200 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:03:43] 2026-01-10 01:01:14,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:03:43] 2026-01-10 01:01:14,200 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:03:43] 2026-01-10 01:01:14,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:03:43] 2026-01-10 01:01:14,201 | INFO     | [monitor] control thread has ended
[2026-01-09 20:03:43] 2026-01-10 01:01:17,588 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:03:43] 2026-01-10 01:01:17,627 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:03:43] 2026-01-10 01:01:17,726 [wrapper] pilotpid: 2240406
[2026-01-09 20:03:43] 2026-01-10 01:01:17,779 [wrapper] Pilot exit status: 0
[2026-01-09 20:03:43] 2026-01-10 01:01:18,072 [wrapper] pandaids: 6962323516 6962323516
[2026-01-09 20:03:43] 2026-01-10 01:01:18,878 [wrapper] cleanup supervisor_pilot  612959 2240407
[2026-01-09 20:03:43] 2026-01-10 01:01:18,927 [wrapper] Test setup, not cleaning
[2026-01-09 20:03:43] 2026-01-10 01:01:18,964 [wrapper] apfmon messages muted
[2026-01-09 20:03:43] 2026-01-10 01:01:19,054 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:03:43] 2026-01-10 01:01:19,083 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:03:43]  *** Error codes and diagnostics ***
[2026-01-09 20:03:43]     "exeErrorCode": 0,
[2026-01-09 20:03:43]     "exeErrorDiag": "",
[2026-01-09 20:03:43]     "pilotErrorCode": 0,
[2026-01-09 20:03:43]     "pilotErrorDiag": "",
[2026-01-09 20:03:43]  *** Listing of results directory ***
[2026-01-09 20:03:43] total 678008
[2026-01-09 20:03:43] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-09 20:03:43] -rwx------. 1 boincer umatlas     36322 Jan  7 16:09 runpilot2-wrapper.sh
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 16:16 queuedata.json
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas       100 Jan  8 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:03:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 00:01 run_atlas
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas       105 Jan  8 00:01 job.xml
[2026-01-09 20:03:43] -rw-r--r--. 3 boincer umatlas 224263647 Jan  8 00:01 EVNT.47898824._000750.pool.root.1
[2026-01-09 20:03:43] -rw-r--r--. 3 boincer umatlas 224263647 Jan  8 00:01 ATLAS.root_0
[2026-01-09 20:03:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 00:01 start_atlas.sh
[2026-01-09 20:03:43] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 00:01 shared
[2026-01-09 20:03:43] -rw-r--r--. 2 boincer umatlas    592399 Jan  8 00:01 input.tar.gz
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas         0 Jan  8 00:01 boinc_lockfile
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 16:12 pandaJob.out
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas        57 Jan  8 16:12 setup.sh.local
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas    989845 Jan  8 16:13 agis_schedconf.cvmfs.json
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas 217528703 Jan  9 19:50 HITS.47898826._016160.pool.root.1
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas       532 Jan  9 19:50 boinc_task_state.xml
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas      1040 Jan  9 19:58 memory_monitor_summary.json
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:59 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas   1464816 Jan  9 19:59 log.47898826._016160.job.log.tgz.1
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas      7829 Jan  9 20:00 heartbeat.json
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas        96 Jan  9 20:01 pilot_heartbeat.json
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas       823 Jan  9 20:01 pilotlog.txt
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas  10694230 Jan  9 20:01 log.47898826._016160.job.log.1
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas       357 Jan  9 20:01 output.list
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:01 runtime_log
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas  12175360 Jan  9 20:01 result.tar.gz
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas       787 Jan  9 20:01 VjKLDmdxpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBDjKDmnyhsXm.diag
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas      9431 Jan  9 20:01 runtime_log.err
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas      6525 Jan  9 20:03 init_data.xml
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:03 boinc_mmap_file
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas        29 Jan  9 20:03 wrapper_checkpoint.txt
[2026-01-09 20:03:43] -rw-r--r--. 1 boincer umatlas     23235 Jan  9 20:03 stderr.txt
[2026-01-09 20:03:43] HITS file was successfully produced:
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas 217528703 Jan  9 19:50 shared/HITS.pool.root.1
[2026-01-09 20:03:43]  *** Contents of shared directory: ***
[2026-01-09 20:03:43] total 443932
[2026-01-09 20:03:43] -rw-r--r--. 3 boincer umatlas 224263647 Jan  8 00:01 ATLAS.root_0
[2026-01-09 20:03:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 00:01 start_atlas.sh
[2026-01-09 20:03:43] -rw-r--r--. 2 boincer umatlas    592399 Jan  8 00:01 input.tar.gz
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas 217528703 Jan  9 19:50 HITS.pool.root.1
[2026-01-09 20:03:43] -rw-------. 1 boincer umatlas  12175360 Jan  9 20:01 result.tar.gz
20:03:45 (2234824): run_atlas exited; CPU time 114835.632745
20:03:45 (2234824): called boinc_finish(0)

</stderr_txt>
]]>

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