Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:05:36 (2232464): wrapper (7.7.26015): starting
07:05:36 (2232464): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 07:05:36] Arguments: --nthreads 4
[2026-01-08 07:05:36] Threads: 4
[2026-01-08 07:05:36] Checking for CVMFS
[2026-01-08 07:05:36] No cvmfs_config command found, will try listing directly
[2026-01-08 07:05:36] CVMFS is ok
[2026-01-08 07:05:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 07:05:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 07:05:36] Further information can be found at the LHC@home message board.
[2026-01-08 07:05:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:05:36] Checking for apptainer binary...
[2026-01-08 07:05:36] which: no apptainer in ((null))
[2026-01-08 07:05:36] apptainer is not installed, using version from CVMFS
[2026-01-08 07:05:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:05:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-01-08 07:05:36] apptainer works
[2026-01-08 07:05:36] Set ATHENA_PROC_NUMBER=4
[2026-01-08 07:05:36] Set ATHENA_CORE_NUMBER=4
[2026-01-08 07:05:37] Starting ATLAS job with PandaID=6962323048
[2026-01-08 07:05:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:18:17]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:18:17] 2026-01-08 10:13:31,009 | INFO     | executing command: lscpu
[2026-01-08 11:18:17] 2026-01-08 10:13:31,109 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 11:18:17] 2026-01-08 10:13:31,973 | INFO     | time since job start (14860s) is within the limit (174528.0s)
[2026-01-08 11:18:17] 2026-01-08 10:13:33,084 | INFO     | monitor loop #1008: job 0:6962323048 is in state 'finished'
[2026-01-08 11:18:17] 2026-01-08 10:13:33,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 11:18:17] 2026-01-08 10:13:33,979 | INFO     | time since job start (14862s) is within the limit (174528.0s)
[2026-01-08 11:18:17] 2026-01-08 10:13:35,586 | INFO     | monitor loop #1009: job 0:6962323048 is in state 'finished'
[2026-01-08 11:18:17] 2026-01-08 10:13:35,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 11:18:17] 2026-01-08 10:13:35,984 | INFO     | time since job start (14864s) is within the limit (174528.0s)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,754 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 11:18:17] 2026-01-08 10:13:37,776 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2571.811726562501
[2026-01-08 11:18:17] 2026-01-08 10:13:37,802 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6962323048/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,803 | INFO     | extracted standard info from prmon json
[2026-01-08 11:18:17] 2026-01-08 10:13:37,803 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 11:18:17] 2026-01-08 10:13:37,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 11:18:17] 2026-01-08 10:13:37,804 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 11:18:17] 2026-01-08 10:13:37,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 11:18:17] 2026-01-08 10:13:37,809 | INFO     | fitting pss+swap vs Time
[2026-01-08 11:18:17] 2026-01-08 10:13:37,809 | INFO     | sum of square deviations: 4449281562.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,811 | INFO     | sum of deviations: 11876213342.00001
[2026-01-08 11:18:17] 2026-01-08 10:13:37,811 | INFO     | mean x: 1767859768.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,811 | INFO     | mean y: 2335892.3333333335
[2026-01-08 11:18:17] 2026-01-08 10:13:37,812 | INFO     | intersect: -4716511290.282134
[2026-01-08 11:18:17] 2026-01-08 10:13:37,812 | INFO     | chi2: 1.3035583597885558
[2026-01-08 11:18:17] 2026-01-08 10:13:37,812 | INFO     | sum of square deviations: 4180243959.5
[2026-01-08 11:18:17] 2026-01-08 10:13:37,814 | INFO     | sum of deviations: 11669368564.000002
[2026-01-08 11:18:17] 2026-01-08 10:13:37,814 | INFO     | mean x: 1767859615.5
[2026-01-08 11:18:17] 2026-01-08 10:13:37,814 | INFO     | mean y: 2335775.1092436975
[2026-01-08 11:18:17] 2026-01-08 10:13:37,815 | INFO     | intersect: -4932736345.693095
[2026-01-08 11:18:17] 2026-01-08 10:13:37,815 | INFO     | chi2: 1.3040099479129865
[2026-01-08 11:18:17] 2026-01-08 10:13:37,815 | INFO     | current chi2=1.3040099479129865 (change=-0.03464272397470112 %)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,815 | INFO     | right removable region: 237
[2026-01-08 11:18:17] 2026-01-08 10:13:37,816 | INFO     | sum of square deviations: 4180243959.5
[2026-01-08 11:18:17] 2026-01-08 10:13:37,818 | INFO     | sum of deviations: -16217982587.00001
[2026-01-08 11:18:17] 2026-01-08 10:13:37,818 | INFO     | mean x: 1767859920.5
[2026-01-08 11:18:17] 2026-01-08 10:13:37,818 | INFO     | mean y: 2351619.974789916
[2026-01-08 11:18:17] 2026-01-08 10:13:37,818 | INFO     | intersect: 6861071274.784979
[2026-01-08 11:18:17] 2026-01-08 10:13:37,818 | INFO     | chi2: 0.02657291322184105
[2026-01-08 11:18:17] 2026-01-08 10:13:37,818 | INFO     | current chi2=0.02657291322184105 (change=97.96150950800919 %)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,819 | INFO     | sum of square deviations: 3922276332.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,821 | INFO     | sum of deviations: -16333012544.000002
[2026-01-08 11:18:17] 2026-01-08 10:13:37,821 | INFO     | mean x: 1767860073.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,821 | INFO     | mean y: 2351684.9227467813
[2026-01-08 11:18:17] 2026-01-08 10:13:37,821 | INFO     | intersect: 7364015755.547376
[2026-01-08 11:18:17] 2026-01-08 10:13:37,821 | INFO     | chi2: 0.025499542648410926
[2026-01-08 11:18:17] 2026-01-08 10:13:37,822 | INFO     | current chi2=0.025499542648410926 (change=4.0393409803027875 %)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,822 | INFO     | left removable region: 20
[2026-01-08 11:18:17] 2026-01-08 10:13:37,822 | INFO     | sum of square deviations: 3168461268.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,824 | INFO     | sum of deviations: -13286744280.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,824 | INFO     | mean x: 1767860195.0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,824 | INFO     | mean y: 2350199.8433179725
[2026-01-08 11:18:17] 2026-01-08 10:13:37,824 | INFO     | intersect: 7415761425.975414
[2026-01-08 11:18:17] 2026-01-08 10:13:37,824 | INFO     | chi2: 0.024708549732042413
[2026-01-08 11:18:17] 2026-01-08 10:13:37,824 | INFO     | current memory leak: -4.19 B/s (using 217 data points, chi2=0.02)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,825 | INFO     | could have reported an average CPU frequency of 2608 MHz (12 samples)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,825 | INFO     | ..............................
[2026-01-08 11:18:17] 2026-01-08 10:13:37,825 | INFO     | . Timing measurements:
[2026-01-08 11:18:17] 2026-01-08 10:13:37,825 | INFO     | . get job = 0 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,825 | INFO     | . initial setup = 1 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,825 | INFO     | . payload setup = 9 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,826 | INFO     | . stage-in = 0 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,826 | INFO     | . payload execution = 14826 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,826 | INFO     | . stage-out = 1 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,826 | INFO     | . log creation = 0 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,826 | INFO     | ..............................
[2026-01-08 11:18:17] 2026-01-08 10:13:37,932 | INFO     | 
[2026-01-08 11:18:17] 2026-01-08 10:13:37,932 | INFO     | job summary report
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | --------------------------------------------------
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | PanDA job id: 6962323048
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | task id: 47898826
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | errors: (none)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | pilot state: finished 
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | transexitcode: 0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | exeerrorcode: 0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,933 | INFO     | exeerrordiag: 
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | exitcode: 0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | exitmsg: OK
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | cpuconsumptiontime: 56763 s
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | nevents: 400
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | neventsw: 0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | pid: 2244386
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | pgrp: 2244386
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | corecount: 4
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | event service: False
[2026-01-08 11:18:17] 2026-01-08 10:13:37,934 | INFO     | sizes: {0: 2283810, 1: 2284009, 8: 2284271, 11: 2284299, 14840: 2315741, 14841: 2324947, 14848: 2325085}
[2026-01-08 11:18:17] 2026-01-08 10:13:37,935 | INFO     | --------------------------------------------------
[2026-01-08 11:18:17] 2026-01-08 10:13:37,935 | INFO     | 
[2026-01-08 11:18:17] 2026-01-08 10:13:37,935 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2026-01-08 11:18:17] 2026-01-08 10:13:37,963 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,965 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,966 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:18:17] 2026-01-08 10:13:37,966 | INFO     | job 6962323048 has completed (purged errors)
[2026-01-08 11:18:17] 2026-01-08 10:13:37,966 | INFO     | overall cleanup function is called
[2026-01-08 11:18:17] 2026-01-08 10:13:38,972 | INFO     | --- collectZombieJob: --- 10, [2244386]
[2026-01-08 11:18:17] 2026-01-08 10:13:38,973 | INFO     | zombie collector waiting for pid 2244386
[2026-01-08 11:18:17] 2026-01-08 10:13:38,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:18:17] 2026-01-08 10:13:38,973 | INFO     | collected zombie processes
[2026-01-08 11:18:17] 2026-01-08 10:13:38,973 | INFO     | will attempt to kill all subprocesses of pid=2244386
[2026-01-08 11:18:17] 2026-01-08 10:13:39,836 | INFO     | process IDs to be killed: [2244386] (in reverse order)
[2026-01-08 11:18:17] 2026-01-08 10:13:40,094 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:18:17] 2026-01-08 10:13:40,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:18:17] 2026-01-08 10:13:40,127 | INFO     | did not find any defunct processes belonging to 2244386
[2026-01-08 11:18:17] 2026-01-08 10:13:40,155 | INFO     | did not find any defunct processes belonging to 2244386
[2026-01-08 11:18:17] 2026-01-08 10:13:40,156 | INFO     | ready for new job
[2026-01-08 11:18:17] 2026-01-08 10:13:40,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:18:17] 2026-01-08 10:13:40,159 | INFO     | ***************************************
[2026-01-08 11:18:17] 2026-01-08 10:13:40,159 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:18:17] 2026-01-08 10:13:40,159 | INFO     | ***************************************
[2026-01-08 11:18:17] 2026-01-08 10:13:40,159 | INFO     | 
[2026-01-08 11:18:17] 2026-01-08 10:13:40,167 | INFO     | architecture information:
[2026-01-08 11:18:17] 2026-01-08 10:13:40,168 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:18:17] 2026-01-08 10:13:40,189 | INFO     | cat /etc/os-release:
[2026-01-08 11:18:17] NAME="CentOS Linux"
[2026-01-08 11:18:17] VERSION="7 (Core)"
[2026-01-08 11:18:17] ID="centos"
[2026-01-08 11:18:17] ID_LIKE="rhel fedora"
[2026-01-08 11:18:17] VERSION_ID="7"
[2026-01-08 11:18:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:18:17] ANSI_COLOR="0;31"
[2026-01-08 11:18:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:18:17] HOME_URL="https://www.centos.org/"
[2026-01-08 11:18:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:18:17] 
[2026-01-08 11:18:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:18:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:18:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:18:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:18:17] 
[2026-01-08 11:18:17] 2026-01-08 10:13:40,189 | INFO     | ***************************************
[2026-01-08 11:18:17] 2026-01-08 10:13:40,692 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2026-01-08 11:18:17] 2026-01-08 10:13:40,717 | INFO     | sufficient remaining disk space (3330140012544 B)
[2026-01-08 11:18:17] 2026-01-08 10:13:40,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:18:17] 2026-01-08 10:13:40,718 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:18:17] 2026-01-08 10:13:40,718 | INFO     | update_server=False
[2026-01-08 11:18:17] 2026-01-08 10:13:40,718 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:18:17] 2026-01-08 10:13:40,851 | INFO     | all payload control threads have been joined
[2026-01-08 11:18:17] 2026-01-08 10:13:41,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:18:17] 2026-01-08 10:13:41,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:18:17] 2026-01-08 10:13:41,554 | INFO     | all data control threads have been joined
[2026-01-08 11:18:17] 2026-01-08 10:13:41,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:18:17] 2026-01-08 10:13:41,604 | INFO     | aborting loop
[2026-01-08 11:18:17] 2026-01-08 10:13:41,723 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:41,787 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:41,857 | INFO     | [payload] control thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:41,878 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,049 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,167 | INFO     | [job] validate thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,255 | INFO     | all job control threads have been joined
[2026-01-08 11:18:17] 2026-01-08 10:13:42,330 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,517 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,559 | INFO     | [data] control thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,569 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,609 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,847 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:42,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:18:17] 2026-01-08 10:13:43,260 | INFO     | [job] control thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:43,424 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:43,942 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:13:45,522 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:18:17] 2026-01-08 10:14:10,110 | INFO     | PID=2236492 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 11:18:17] 2026-01-08 10:14:10,112 | INFO     | .. there are 7 such processes running
[2026-01-08 11:18:17] 2026-01-08 10:14:10,114 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:18:17] 2026-01-08 10:14:10,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:18:17] 2026-01-08 10:14:10,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:18:17] 2026-01-08 10:14:15,408 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:18:17] 2026-01-08 10:14:17,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23020087596864)>', '<ExcThread(monitor, started 23019843966720)>']
[2026-01-08 11:18:17] 2026-01-08 10:14:17,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:18:17] 2026-01-08 10:14:17,150 | INFO     | [monitor] control thread has ended
[2026-01-08 11:18:17] 2026-01-08 10:14:22,126 | INFO     | all workflow threads have been joined
[2026-01-08 11:18:17] 2026-01-08 10:14:22,126 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:18:17] 2026-01-08 10:14:22,126 | INFO     | traces error code: 0
[2026-01-08 11:18:17] 2026-01-08 10:14:22,127 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:18:17] 2026-01-08 10:14:22,347 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:18:17] 2026-01-08 10:14:22,351 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:18:17] 2026-01-08 10:14:22,355 [wrapper] pilotpid: 2236492
[2026-01-08 11:18:17] 2026-01-08 10:14:22,360 [wrapper] Pilot exit status: 0
[2026-01-08 11:18:17] 2026-01-08 10:14:22,377 [wrapper] pandaids: 6962323048
[2026-01-08 11:18:17] 2026-01-08 10:14:22,573 [wrapper] cleanup supervisor_pilot 2644573 2236493
[2026-01-08 11:18:17] 2026-01-08 10:14:22,577 [wrapper] Test setup, not cleaning
[2026-01-08 11:18:17] 2026-01-08 10:14:22,580 [wrapper] apfmon messages muted
[2026-01-08 11:18:17] 2026-01-08 10:14:22,584 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:18:17] 2026-01-08 10:14:22,588 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:18:17]  *** Error codes and diagnostics ***
[2026-01-08 11:18:17]     "exeErrorCode": 0,
[2026-01-08 11:18:17]     "exeErrorDiag": "",
[2026-01-08 11:18:17]     "pilotErrorCode": 0,
[2026-01-08 11:18:17]     "pilotErrorDiag": "",
[2026-01-08 11:18:17]  *** Listing of results directory ***
[2026-01-08 11:18:17] total 443432
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 11:18:17] -rwx------ 1 boinc boinc     36322 Jan  7 22:09 runpilot2-wrapper.sh
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:16 queuedata.json
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc       100 Jan  8 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:18:17] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 07:05 run_atlas
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc       105 Jan  8 07:05 job.xml
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc      6690 Jan  8 07:05 init_data.xml
[2026-01-08 11:18:17] -rw-r--r-- 2 boinc boinc 226089958 Jan  8 07:05 EVNT.47898824._000735.pool.root.1
[2026-01-08 11:18:17] -rw-r--r-- 2 boinc boinc     15847 Jan  8 07:05 start_atlas.sh
[2026-01-08 11:18:17] drwxrwx--x 2 boinc boinc      4096 Jan  8 07:05 shared
[2026-01-08 11:18:17] -rw-r--r-- 2 boinc boinc    592404 Jan  8 07:05 input.tar.gz
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc         0 Jan  8 07:05 boinc_lockfile
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc      2519 Jan  8 07:05 pandaJob.out
[2026-01-08 11:18:17] -rw------- 1 boinc boinc    989827 Jan  8 07:05 agis_schedconf.cvmfs.json
[2026-01-08 11:18:17] drwx------ 5 boinc boinc      4096 Jan  8 07:05 pilot3
[2026-01-08 11:18:17] -rw------- 1 boinc boinc 219133316 Jan  8 11:12 HITS.47898826._015778.pool.root.1
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc       530 Jan  8 11:12 boinc_task_state.xml
[2026-01-08 11:18:17] -rw------- 1 boinc boinc      1035 Jan  8 11:13 memory_monitor_summary.json
[2026-01-08 11:18:17] -rw------- 1 boinc boinc   1516240 Jan  8 11:13 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:18:17] -rw------- 1 boinc boinc    411043 Jan  8 11:13 log.47898826._015778.job.log.tgz.1
[2026-01-08 11:18:17] -rw------- 1 boinc boinc      7795 Jan  8 11:13 heartbeat.json
[2026-01-08 11:18:17] -rw------- 1 boinc boinc        95 Jan  8 11:14 pilot_heartbeat.json
[2026-01-08 11:18:17] -rw------- 1 boinc boinc      4835 Jan  8 11:14 pilotlog.txt
[2026-01-08 11:18:17] -rw------- 1 boinc boinc   2055855 Jan  8 11:14 log.47898826._015778.job.log.1
[2026-01-08 11:18:17] -rw------- 1 boinc boinc       357 Jan  8 11:14 output.list
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc       620 Jan  8 11:14 runtime_log
[2026-01-08 11:18:17] -rw------- 1 boinc boinc   2488320 Jan  8 11:14 result.tar.gz
[2026-01-08 11:18:17] -rw------- 1 boinc boinc       667 Jan  8 11:14 yqQMDmcxpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm25dKDmmpdbcn.diag
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc      9223 Jan  8 11:14 runtime_log.err
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc        27 Jan  8 11:18 wrapper_checkpoint.txt
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc      8192 Jan  8 11:18 boinc_mmap_file
[2026-01-08 11:18:17] -rw-r--r-- 1 boinc boinc     21187 Jan  8 11:18 stderr.txt
[2026-01-08 11:18:17] HITS file was successfully produced:
[2026-01-08 11:18:17] -rw------- 1 boinc boinc 219133316 Jan  8 11:12 shared/HITS.pool.root.1
[2026-01-08 11:18:17]  *** Contents of shared directory: ***
[2026-01-08 11:18:17] total 437828
[2026-01-08 11:18:17] -rw-r--r-- 2 boinc boinc 226089958 Jan  8 07:05 ATLAS.root_0
[2026-01-08 11:18:17] -rw-r--r-- 2 boinc boinc     15847 Jan  8 07:05 start_atlas.sh
[2026-01-08 11:18:17] -rw-r--r-- 2 boinc boinc    592404 Jan  8 07:05 input.tar.gz
[2026-01-08 11:18:17] -rw------- 1 boinc boinc 219133316 Jan  8 11:12 HITS.pool.root.1
[2026-01-08 11:18:17] -rw------- 1 boinc boinc   2488320 Jan  8 11:14 result.tar.gz
11:18:18 (2232464): run_atlas exited; CPU time 57836.684512
11:18:18 (2232464): called boinc_finish(0)

</stderr_txt>
]]>

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