Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:11:47 (29337): wrapper (7.7.26015): starting
09:11:47 (29337): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 09:11:47] Arguments: --nthreads 8
[2026-01-08 09:11:47] Threads: 8
[2026-01-08 09:11:47] Checking for CVMFS
[2026-01-08 09:11:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:11:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:11:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:11:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:11:50] 2.11.2.0 18097 33718 126332 154896 1 61 19691585 25165825 96 130560 0 14269175 99.736 12737168 2640 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 09:11:50] CVMFS is ok
[2026-01-08 09:11:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:11:50] Checking for apptainer binary...
[2026-01-08 09:11:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:11:50] Running /usr/bin/apptainer --version
[2026-01-08 09:11:50] apptainer version 1.3.2-1.el7
[2026-01-08 09:11:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:12:07] cg-vwn387.simple-grid.lan
[2026-01-08 09:12:07] apptainer works
[2026-01-08 09:12:07] Set ATHENA_PROC_NUMBER=8
[2026-01-08 09:12:07] Set ATHENA_CORE_NUMBER=8
[2026-01-08 09:12:07] Starting ATLAS job with PandaID=6962322075
[2026-01-08 09:12:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 15:21:01]  *** The last 200 lines of the pilot log: ***
[2026-01-08 15:21:01] 2026-01-08 14:20:13,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,752 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 15:21:01] 2026-01-08 14:20:13,754 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 15:21:01] 2026-01-08 14:20:13,756 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6962322075/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,756 | INFO     | extracted standard info from prmon json
[2026-01-08 15:21:01] 2026-01-08 14:20:13,756 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 15:21:01] 2026-01-08 14:20:13,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 15:21:01] 2026-01-08 14:20:13,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 15:21:01] 2026-01-08 14:20:13,757 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 15:21:01] 2026-01-08 14:20:13,765 | INFO     | fitting pss+swap vs Time
[2026-01-08 15:21:01] 2026-01-08 14:20:13,766 | INFO     | sum of square deviations: 12955770358.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,770 | INFO     | sum of deviations: 123779570872.99995
[2026-01-08 15:21:01] 2026-01-08 14:20:13,770 | INFO     | mean x: 1767871291.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,770 | INFO     | mean y: 2465106.4438040345
[2026-01-08 15:21:01] 2026-01-08 14:20:13,771 | INFO     | intersect: -16887796430.459274
[2026-01-08 15:21:01] 2026-01-08 14:20:13,771 | INFO     | chi2: 7.823881822091539
[2026-01-08 15:21:01] 2026-01-08 14:20:13,772 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 15:21:01] 2026-01-08 14:20:13,780 | INFO     | sum of deviations: 145055135470.50003
[2026-01-08 15:21:01] 2026-01-08 14:20:13,780 | INFO     | mean x: 1767871138.5
[2026-01-08 15:21:01] 2026-01-08 14:20:13,780 | INFO     | mean y: 2470909.3596491227
[2026-01-08 15:21:01] 2026-01-08 14:20:13,780 | INFO     | intersect: -20671822985.93736
[2026-01-08 15:21:01] 2026-01-08 14:20:13,781 | INFO     | chi2: 7.100795264689009
[2026-01-08 15:21:01] 2026-01-08 14:20:13,781 | INFO     | current chi2=7.100795264689009 (change=9.242043449082017 %)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,781 | INFO     | right removable region: 341
[2026-01-08 15:21:01] 2026-01-08 14:20:13,782 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 15:21:01] 2026-01-08 14:20:13,786 | INFO     | sum of deviations: 5183400701.999996
[2026-01-08 15:21:01] 2026-01-08 14:20:13,786 | INFO     | mean x: 1767871443.5
[2026-01-08 15:21:01] 2026-01-08 14:20:13,786 | INFO     | mean y: 2497849.678362573
[2026-01-08 15:21:01] 2026-01-08 14:20:13,786 | INFO     | intersect: -736277565.8272377
[2026-01-08 15:21:01] 2026-01-08 14:20:13,787 | INFO     | chi2: 3.248859367640126
[2026-01-08 15:21:01] 2026-01-08 14:20:13,787 | INFO     | current chi2=3.248859367640126 (change=58.47509661423265 %)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,788 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,792 | INFO     | sum of deviations: -75351683683.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,792 | INFO     | mean x: 1767871596.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,792 | INFO     | mean y: 2520713.0237388723
[2026-01-08 15:21:01] 2026-01-08 14:20:13,792 | INFO     | intersect: 11227340480.210056
[2026-01-08 15:21:01] 2026-01-08 14:20:13,793 | INFO     | chi2: 1.1078110851275444
[2026-01-08 15:21:01] 2026-01-08 14:20:13,793 | INFO     | current chi2=1.1078110851275444 (change=65.90153774700856 %)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,793 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,801 | INFO     | sum of deviations: -86260916759.49998
[2026-01-08 15:21:01] 2026-01-08 14:20:13,802 | INFO     | mean x: 1767871748.5
[2026-01-08 15:21:01] 2026-01-08 14:20:13,802 | INFO     | mean y: 2523892.4126506024
[2026-01-08 15:21:01] 2026-01-08 14:20:13,802 | INFO     | intersect: 13441806607.847803
[2026-01-08 15:21:01] 2026-01-08 14:20:13,803 | INFO     | chi2: 1.033799824057953
[2026-01-08 15:21:01] 2026-01-08 14:20:13,803 | INFO     | current chi2=1.033799824057953 (change=6.680855794205244 %)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,803 | INFO     | left removable region: 30
[2026-01-08 15:21:01] 2026-01-08 14:20:13,803 | INFO     | sum of square deviations: 9327281860.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,807 | INFO     | sum of deviations: -31762094758.000023
[2026-01-08 15:21:01] 2026-01-08 14:20:13,807 | INFO     | mean x: 1767872023.0
[2026-01-08 15:21:01] 2026-01-08 14:20:13,807 | INFO     | mean y: 2520855.186495177
[2026-01-08 15:21:01] 2026-01-08 14:20:13,807 | INFO     | intersect: 6022636850.109714
[2026-01-08 15:21:01] 2026-01-08 14:20:13,808 | INFO     | chi2: 0.18506094099559317
[2026-01-08 15:21:01] 2026-01-08 14:20:13,808 | INFO     | current memory leak: -3.41 B/s (using 311 data points, chi2=0.19)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,809 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 15:21:01] 2026-01-08 14:20:13,809 | INFO     | ..............................
[2026-01-08 15:21:01] 2026-01-08 14:20:13,809 | INFO     | . Timing measurements:
[2026-01-08 15:21:01] 2026-01-08 14:20:13,809 | INFO     | . get job = 0 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,809 | INFO     | . initial setup = 12 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,810 | INFO     | . payload setup = 154 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,810 | INFO     | . stage-in = 0 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,810 | INFO     | . payload execution = 21350 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,810 | INFO     | . stage-out = 4 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,810 | INFO     | . log creation = 2 s
[2026-01-08 15:21:01] 2026-01-08 14:20:13,810 | INFO     | ..............................
[2026-01-08 15:21:01] 2026-01-08 14:20:14,101 | INFO     | 
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | job summary report
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | --------------------------------------------------
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | PanDA job id: 6962322075
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | task id: 47898826
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | errors: (none)
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | pilot state: finished 
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | transexitcode: 0
[2026-01-08 15:21:01] 2026-01-08 14:20:14,102 | INFO     | exeerrorcode: 0
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | exeerrordiag: 
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | exitcode: 0
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | exitmsg: OK
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | cpuconsumptiontime: 80370 s
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | nevents: 400
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | neventsw: 0
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | pid: 7145
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | pgrp: 7145
[2026-01-08 15:21:01] 2026-01-08 14:20:14,103 | INFO     | corecount: 8
[2026-01-08 15:21:01] 2026-01-08 14:20:14,104 | INFO     | event service: False
[2026-01-08 15:21:01] 2026-01-08 14:20:14,104 | INFO     | sizes: {0: 2283743, 1: 2283998, 12: 2283998, 23: 2284026, 34: 2284054, 44: 2284082, 55: 2284238, 66: 2284266, 77: 2284294, 87: 2284350, 98: 2284378, 108: 2284948, 
[2026-01-08 15:21:01] 2026-01-08 14:20:14,104 | INFO     | --------------------------------------------------
[2026-01-08 15:21:01] 2026-01-08 14:20:14,104 | INFO     | 
[2026-01-08 15:21:01] 2026-01-08 14:20:14,104 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-01-08 15:21:01] 2026-01-08 14:20:14,540 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,540 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,540 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,540 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,541 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,542 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 15:21:01] 2026-01-08 14:20:14,543 | INFO     | job 6962322075 has completed (purged errors)
[2026-01-08 15:21:01] 2026-01-08 14:20:14,543 | INFO     | overall cleanup function is called
[2026-01-08 15:21:01] 2026-01-08 14:20:15,552 | INFO     | --- collectZombieJob: --- 10, [7145]
[2026-01-08 15:21:01] 2026-01-08 14:20:15,553 | INFO     | zombie collector waiting for pid 7145
[2026-01-08 15:21:01] 2026-01-08 14:20:15,553 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 15:21:01] 2026-01-08 14:20:15,553 | INFO     | collected zombie processes
[2026-01-08 15:21:01] 2026-01-08 14:20:15,553 | INFO     | will attempt to kill all subprocesses of pid=7145
[2026-01-08 15:21:01] 2026-01-08 14:20:15,666 | INFO     | process IDs to be killed: [7145] (in reverse order)
[2026-01-08 15:21:01] 2026-01-08 14:20:16,282 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 15:21:01] 2026-01-08 14:20:16,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 15:21:01] 2026-01-08 14:20:16,285 | INFO     | did not find any defunct processes belonging to 7145
[2026-01-08 15:21:01] 2026-01-08 14:20:16,287 | INFO     | did not find any defunct processes belonging to 7145
[2026-01-08 15:21:01] 2026-01-08 14:20:16,287 | INFO     | ready for new job
[2026-01-08 15:21:01] 2026-01-08 14:20:16,287 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 15:21:01] 2026-01-08 14:20:16,290 | INFO     | ***************************************
[2026-01-08 15:21:01] 2026-01-08 14:20:16,290 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 15:21:01] 2026-01-08 14:20:16,290 | INFO     | ***************************************
[2026-01-08 15:21:01] 2026-01-08 14:20:16,297 | INFO     | 
[2026-01-08 15:21:01] 2026-01-08 14:20:16,298 | INFO     | pilot is running in a VM
[2026-01-08 15:21:01] 2026-01-08 14:20:16,298 | INFO     | architecture information:
[2026-01-08 15:21:01] 2026-01-08 14:20:16,307 | INFO     | executing command: cat /etc/os-release
[2026-01-08 15:21:01] 2026-01-08 14:20:16,548 | INFO     | cat /etc/os-release:
[2026-01-08 15:21:01] NAME="CentOS Linux"
[2026-01-08 15:21:01] VERSION="7 (Core)"
[2026-01-08 15:21:01] ID="centos"
[2026-01-08 15:21:01] ID_LIKE="rhel fedora"
[2026-01-08 15:21:01] VERSION_ID="7"
[2026-01-08 15:21:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 15:21:01] ANSI_COLOR="0;31"
[2026-01-08 15:21:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 15:21:01] HOME_URL="https://www.centos.org/"
[2026-01-08 15:21:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 15:21:01] 
[2026-01-08 15:21:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 15:21:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 15:21:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 15:21:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 15:21:01] 
[2026-01-08 15:21:01] 2026-01-08 14:20:16,548 | INFO     | ***************************************
[2026-01-08 15:21:01] 2026-01-08 14:20:17,052 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-01-08 15:21:01] 2026-01-08 14:20:17,306 | INFO     | sufficient remaining disk space (496668508160 B)
[2026-01-08 15:21:01] 2026-01-08 14:20:17,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 15:21:01] 2026-01-08 14:20:17,306 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 15:21:01] 2026-01-08 14:20:17,306 | INFO     | update_server=False
[2026-01-08 15:21:01] 2026-01-08 14:20:17,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 15:21:01] 2026-01-08 14:20:17,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:21:01] 2026-01-08 14:20:17,307 | INFO     | aborting loop
[2026-01-08 15:21:01] 2026-01-08 14:20:17,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 15:21:01] 2026-01-08 14:20:17,406 | INFO     | all data control threads have been joined
[2026-01-08 15:21:01] 2026-01-08 14:20:17,667 | INFO     | all job control threads have been joined
[2026-01-08 15:21:01] 2026-01-08 14:20:18,312 | INFO     | [job] retrieve thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,313 | INFO     | [job] job monitor thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,412 | INFO     | [data] control thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,442 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,582 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,669 | INFO     | [payload] validate_post thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,673 | INFO     | [job] control thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,707 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,720 | INFO     | [payload] failed_post thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,724 | INFO     | all payload control threads have been joined
[2026-01-08 15:21:01] 2026-01-08 14:20:18,846 | INFO     | [data] copytool_in thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:18,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:21:01] 2026-01-08 14:20:18,993 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:19,135 | INFO     | [job] validate thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:19,409 | INFO     | [data] copytool_out thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:19,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 15:21:01] 2026-01-08 14:20:19,730 | INFO     | [payload] control thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:19,967 | INFO     | [job] queue monitor thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:23,502 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 15:21:01] 2026-01-08 14:20:45,957 | INFO     | PID=649 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-08 15:21:01] 2026-01-08 14:20:45,958 | INFO     | .. there are 2 such processes running
[2026-01-08 15:21:01] 2026-01-08 14:20:45,958 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 15:21:01] 2026-01-08 14:20:45,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 15:21:01] 2026-01-08 14:20:45,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 15:21:01] 2026-01-08 14:20:50,818 | INFO     | [monitor] cgroup control has ended
[2026-01-08 15:21:01] 2026-01-08 14:20:51,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274372876096)>', '<ExcThread(monitor, started 140273942251264)>']
[2026-01-08 15:21:01] 2026-01-08 14:20:51,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 15:21:01] 2026-01-08 14:20:51,995 | INFO     | [monitor] control thread has ended
[2026-01-08 15:21:01] 2026-01-08 14:20:56,903 | INFO     | all workflow threads have been joined
[2026-01-08 15:21:01] 2026-01-08 14:20:56,904 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 15:21:01] 2026-01-08 14:20:56,904 | INFO     | traces error code: 0
[2026-01-08 15:21:01] 2026-01-08 14:20:56,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 15:21:01] 2026-01-08 14:20:57,234 [wrapper] ==== pilot stdout END ====
[2026-01-08 15:21:01] 2026-01-08 14:20:57,333 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 15:21:01] 2026-01-08 14:20:57,441 [wrapper] pilotpid: 649
[2026-01-08 15:21:01] 2026-01-08 14:20:57,547 [wrapper] Pilot exit status: 0
[2026-01-08 15:21:01] 2026-01-08 14:20:58,064 [wrapper] pandaids: 6962322075
[2026-01-08 15:21:01] 2026-01-08 14:20:58,990 [wrapper] cleanup supervisor_pilot  6435 650
[2026-01-08 15:21:01] 2026-01-08 14:20:59,111 [wrapper] Test setup, not cleaning
[2026-01-08 15:21:01] 2026-01-08 14:20:59,220 [wrapper] apfmon messages muted
[2026-01-08 15:21:01] 2026-01-08 14:20:59,325 [wrapper] ==== wrapper stdout END ====
[2026-01-08 15:21:01] 2026-01-08 14:20:59,428 [wrapper] ==== wrapper stderr END ====
[2026-01-08 15:21:01]  *** Error codes and diagnostics ***
[2026-01-08 15:21:01]     "exeErrorCode": 0,
[2026-01-08 15:21:01]     "exeErrorDiag": "",
[2026-01-08 15:21:01]     "pilotErrorCode": 0,
[2026-01-08 15:21:01]     "pilotErrorDiag": "",
[2026-01-08 15:21:01]  *** Listing of results directory ***
[2026-01-08 15:21:01] total 448336
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 15:21:01] -rwx------. 1 boinc boinc     36322 Jan  7 22:09 runpilot2-wrapper.sh
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:16 queuedata.json
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc       100 Jan  8 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 15:21:01] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 09:11 run_atlas
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc       105 Jan  8 09:11 job.xml
[2026-01-08 15:21:01] -rw-r--r--. 2 boinc boinc 223371889 Jan  8 09:11 EVNT.47898824._000704.pool.root.1
[2026-01-08 15:21:01] -rw-r--r--. 2 boinc boinc    592398 Jan  8 09:11 input.tar.gz
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc      6391 Jan  8 09:11 init_data.xml
[2026-01-08 15:21:01] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:11 start_atlas.sh
[2026-01-08 15:21:01] drwxrwx--x. 2 boinc boinc        68 Jan  8 09:11 shared
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc         0 Jan  8 09:11 boinc_lockfile
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc      2519 Jan  8 09:12 pandaJob.out
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc    989819 Jan  8 09:16 agis_schedconf.cvmfs.json
[2026-01-08 15:21:01] drwx------. 5 boinc boinc      4096 Jan  8 09:16 pilot3
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc 224904590 Jan  8 15:16 HITS.47898826._015007.pool.root.1
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc       531 Jan  8 15:17 boinc_task_state.xml
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc      1017 Jan  8 15:18 memory_monitor_summary.json
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc   1516240 Jan  8 15:18 agis_ddmendpoints.agis.ALL.json
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc    559997 Jan  8 15:18 log.47898826._015007.job.log.tgz.1
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc      7782 Jan  8 15:20 heartbeat.json
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc        95 Jan  8 15:20 pilot_heartbeat.json
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc      8192 Jan  8 15:20 boinc_mmap_file
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc        28 Jan  8 15:20 wrapper_checkpoint.txt
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc      4883 Jan  8 15:20 pilotlog.txt
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc   2899624 Jan  8 15:20 log.47898826._015007.job.log.1
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc       357 Jan  8 15:21 output.list
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc       620 Jan  8 15:21 runtime_log
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc   3481600 Jan  8 15:21 result.tar.gz
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc       657 Jan  8 15:21 wJ7NDmQxpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGAjKDmu5jfQo.diag
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc      8833 Jan  8 15:21 runtime_log.err
[2026-01-08 15:21:01] -rw-r--r--. 1 boinc boinc     20791 Jan  8 15:21 stderr.txt
[2026-01-08 15:21:01] HITS file was successfully produced:
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc 224904590 Jan  8 15:16 shared/HITS.pool.root.1
[2026-01-08 15:21:01]  *** Contents of shared directory: ***
[2026-01-08 15:21:01] total 441772
[2026-01-08 15:21:01] -rw-r--r--. 2 boinc boinc 223371889 Jan  8 09:11 ATLAS.root_0
[2026-01-08 15:21:01] -rw-r--r--. 2 boinc boinc    592398 Jan  8 09:11 input.tar.gz
[2026-01-08 15:21:01] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:11 start_atlas.sh
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc 224904590 Jan  8 15:16 HITS.pool.root.1
[2026-01-08 15:21:01] -rw-------. 1 boinc boinc   3481600 Jan  8 15:21 result.tar.gz
15:21:02 (29337): run_atlas exited; CPU time 80596.894728
15:21:02 (29337): called boinc_finish(0)

</stderr_txt>
]]>

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