Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:21:32 (4591): wrapper (7.7.26015): starting
07:21:32 (4591): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 07:21:32] Arguments: --nthreads 8
[2026-01-08 07:21:32] Threads: 8
[2026-01-08 07:21:32] Checking for CVMFS
[2026-01-08 07:21:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 07:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 07:21:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 07:21:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 07:21:36] 2.11.2.0 25330 33586 122884 154894 1 60 15707738 25165825 96 130560 0 15511311 99.789 10729957 3595 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 07:21:36] CVMFS is ok
[2026-01-08 07:21:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:21:36] Checking for apptainer binary...
[2026-01-08 07:21:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 07:21:36] Running /usr/bin/apptainer --version
[2026-01-08 07:21:36] apptainer version 1.3.2-1.el7
[2026-01-08 07:21:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:21:56] cg-vwn437.simple-grid.lan
[2026-01-08 07:21:56] apptainer works
[2026-01-08 07:21:56] Set ATHENA_PROC_NUMBER=8
[2026-01-08 07:21:56] Set ATHENA_CORE_NUMBER=8
[2026-01-08 07:21:56] Starting ATLAS job with PandaID=6962319935
[2026-01-08 07:21:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:48:52]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:48:52] 2026-01-08 12:47:54,260 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6962319935/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,260 | INFO     | extracted standard info from prmon json
[2026-01-08 13:48:52] 2026-01-08 12:47:54,261 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 13:48:52] 2026-01-08 12:47:54,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 13:48:52] 2026-01-08 12:47:54,261 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 13:48:52] 2026-01-08 12:47:54,261 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 13:48:52] 2026-01-08 12:47:54,269 | INFO     | fitting pss+swap vs Time
[2026-01-08 13:48:52] 2026-01-08 12:47:54,270 | INFO     | sum of square deviations: 15078347830.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,275 | INFO     | sum of deviations: 193670978941.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,275 | INFO     | mean x: 1767865196.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,275 | INFO     | mean y: 2446137.0383561645
[2026-01-08 13:48:52] 2026-01-08 12:47:54,275 | INFO     | intersect: -22704563079.43777
[2026-01-08 13:48:52] 2026-01-08 12:47:54,276 | INFO     | chi2: 8.428171741637522
[2026-01-08 13:48:52] 2026-01-08 12:47:54,277 | INFO     | sum of square deviations: 14467136370.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,281 | INFO     | sum of deviations: 215046525131.00003
[2026-01-08 13:48:52] 2026-01-08 12:47:54,281 | INFO     | mean x: 1767865043.5
[2026-01-08 13:48:52] 2026-01-08 12:47:54,281 | INFO     | mean y: 2451403.2
[2026-01-08 13:48:52] 2026-01-08 12:47:54,282 | INFO     | intersect: -26275951231.725822
[2026-01-08 13:48:52] 2026-01-08 12:47:54,282 | INFO     | chi2: 7.705442370503059
[2026-01-08 13:48:52] 2026-01-08 12:47:54,282 | INFO     | current chi2=7.705442370503059 (change=8.575161889072312 %)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,282 | INFO     | right removable region: 359
[2026-01-08 13:48:52] 2026-01-08 12:47:54,283 | INFO     | sum of square deviations: 14467136370.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,287 | INFO     | sum of deviations: 66139921671.00003
[2026-01-08 13:48:52] 2026-01-08 12:47:54,288 | INFO     | mean x: 1767865348.5
[2026-01-08 13:48:52] 2026-01-08 12:47:54,288 | INFO     | mean y: 2477942.644444444
[2026-01-08 13:48:52] 2026-01-08 12:47:54,288 | INFO     | intersect: -8079734921.342347
[2026-01-08 13:48:52] 2026-01-08 12:47:54,289 | INFO     | chi2: 3.591386522468273
[2026-01-08 13:48:52] 2026-01-08 12:47:54,289 | INFO     | current chi2=3.591386522468273 (change=57.38830872743349 %)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,289 | INFO     | sum of square deviations: 13872669410.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,294 | INFO     | sum of deviations: -29754238400.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,294 | INFO     | mean x: 1767865501.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,294 | INFO     | mean y: 2502517.5887323944
[2026-01-08 13:48:52] 2026-01-08 12:47:54,294 | INFO     | intersect: 3794237909.04642
[2026-01-08 13:48:52] 2026-01-08 12:47:54,295 | INFO     | chi2: 0.9797376506257301
[2026-01-08 13:48:52] 2026-01-08 12:47:54,295 | INFO     | current chi2=0.9797376506257301 (change=72.71979374828248 %)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,296 | INFO     | sum of square deviations: 13294714387.5
[2026-01-08 13:48:52] 2026-01-08 12:47:54,300 | INFO     | sum of deviations: -43557567158.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,300 | INFO     | mean x: 1767865653.5
[2026-01-08 13:48:52] 2026-01-08 12:47:54,300 | INFO     | mean y: 2506141.0628571426
[2026-01-08 13:48:52] 2026-01-08 12:47:54,301 | INFO     | intersect: 5794576935.832896
[2026-01-08 13:48:52] 2026-01-08 12:47:54,301 | INFO     | chi2: 0.8964294117781566
[2026-01-08 13:48:52] 2026-01-08 12:47:54,301 | INFO     | current chi2=0.8964294117781566 (change=8.50311701243358 %)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,302 | INFO     | left removable region: 30
[2026-01-08 13:48:52] 2026-01-08 12:47:54,302 | INFO     | sum of square deviations: 11042365180.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,306 | INFO     | sum of deviations: 6356092152.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,306 | INFO     | mean x: 1767865928.0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,306 | INFO     | mean y: 2504839.829787234
[2026-01-08 13:48:52] 2026-01-08 12:47:54,306 | INFO     | intersect: -1015095879.5433605
[2026-01-08 13:48:52] 2026-01-08 12:47:54,307 | INFO     | chi2: 0.022035600850862105
[2026-01-08 13:48:52] 2026-01-08 12:47:54,307 | INFO     | current memory leak: 0.58 B/s (using 329 data points, chi2=0.02)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,308 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,308 | INFO     | ..............................
[2026-01-08 13:48:52] 2026-01-08 12:47:54,308 | INFO     | . Timing measurements:
[2026-01-08 13:48:52] 2026-01-08 12:47:54,308 | INFO     | . get job = 0 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | . initial setup = 8 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | . payload setup = 141 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | . stage-in = 0 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | . payload execution = 22428 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | . stage-out = 6 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | . log creation = 1 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,309 | INFO     | ..............................
[2026-01-08 13:48:52] 2026-01-08 12:47:54,468 | INFO     | time since job start (22914s) is within the limit (174528.0s)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,753 | INFO     | 
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | job summary report
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | --------------------------------------------------
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | PanDA job id: 6962319935
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | task id: 47898826
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | errors: (none)
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | pilot state: finished 
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | transexitcode: 0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,754 | INFO     | exeerrorcode: 0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | exeerrordiag: 
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | exitcode: 0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | exitmsg: OK
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | cpuconsumptiontime: 84355 s
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | nevents: 400
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | neventsw: 0
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | pid: 14815
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | pgrp: 14815
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | corecount: 8
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | event service: False
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | sizes: {0: 2283742, 1: 2283997, 12: 2283997, 23: 2284025, 34: 2284053, 44: 2284081, 55: 2284237, 66: 2284265, 77: 2284293, 88: 2284349, 98: 2284377, 103: 2284947, 
[2026-01-08 13:48:52] 2026-01-08 12:47:54,755 | INFO     | --------------------------------------------------
[2026-01-08 13:48:52] 2026-01-08 12:47:54,756 | INFO     | 
[2026-01-08 13:48:52] 2026-01-08 12:47:54,756 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-08 13:48:52] 2026-01-08 12:47:55,326 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,326 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,326 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 13:48:52] 2026-01-08 12:47:55,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,329 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 13:48:52] 2026-01-08 12:47:55,329 | INFO     | job 6962319935 has completed (purged errors)
[2026-01-08 13:48:52] 2026-01-08 12:47:55,329 | INFO     | overall cleanup function is called
[2026-01-08 13:48:52] 2026-01-08 12:47:56,338 | INFO     | --- collectZombieJob: --- 10, [14815]
[2026-01-08 13:48:52] 2026-01-08 12:47:56,339 | INFO     | zombie collector waiting for pid 14815
[2026-01-08 13:48:52] 2026-01-08 12:47:56,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 13:48:52] 2026-01-08 12:47:56,339 | INFO     | collected zombie processes
[2026-01-08 13:48:52] 2026-01-08 12:47:56,339 | INFO     | will attempt to kill all subprocesses of pid=14815
[2026-01-08 13:48:52] 2026-01-08 12:47:56,431 | INFO     | process IDs to be killed: [14815] (in reverse order)
[2026-01-08 13:48:52] 2026-01-08 12:47:57,377 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 13:48:52] 2026-01-08 12:47:57,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 13:48:52] 2026-01-08 12:47:57,380 | INFO     | did not find any defunct processes belonging to 14815
[2026-01-08 13:48:52] 2026-01-08 12:47:57,381 | INFO     | did not find any defunct processes belonging to 14815
[2026-01-08 13:48:52] 2026-01-08 12:47:57,382 | INFO     | ready for new job
[2026-01-08 13:48:52] 2026-01-08 12:47:57,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 13:48:52] 2026-01-08 12:47:57,384 | INFO     | ***************************************
[2026-01-08 13:48:52] 2026-01-08 12:47:57,385 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 13:48:52] 2026-01-08 12:47:57,385 | INFO     | ***************************************
[2026-01-08 13:48:52] 2026-01-08 12:47:57,385 | INFO     | 
[2026-01-08 13:48:52] 2026-01-08 12:47:57,385 | INFO     | pilot is running in a VM
[2026-01-08 13:48:52] 2026-01-08 12:47:57,386 | INFO     | architecture information:
[2026-01-08 13:48:52] 2026-01-08 12:47:57,399 | INFO     | executing command: cat /etc/os-release
[2026-01-08 13:48:52] 2026-01-08 12:47:57,684 | INFO     | cat /etc/os-release:
[2026-01-08 13:48:52] NAME="CentOS Linux"
[2026-01-08 13:48:52] VERSION="7 (Core)"
[2026-01-08 13:48:52] ID="centos"
[2026-01-08 13:48:52] ID_LIKE="rhel fedora"
[2026-01-08 13:48:52] VERSION_ID="7"
[2026-01-08 13:48:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:48:52] ANSI_COLOR="0;31"
[2026-01-08 13:48:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:48:52] HOME_URL="https://www.centos.org/"
[2026-01-08 13:48:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:48:52] 
[2026-01-08 13:48:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:48:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:48:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:48:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:48:52] 
[2026-01-08 13:48:52] 2026-01-08 12:47:57,684 | INFO     | ***************************************
[2026-01-08 13:48:52] 2026-01-08 12:47:58,188 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-08 13:48:52] 2026-01-08 12:47:58,477 | INFO     | sufficient remaining disk space (495833841664 B)
[2026-01-08 13:48:52] 2026-01-08 12:47:58,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:48:52] 2026-01-08 12:47:58,477 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:48:52] 2026-01-08 12:47:58,478 | INFO     | update_server=False
[2026-01-08 13:48:52] 2026-01-08 12:47:58,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:48:52] 2026-01-08 12:47:58,774 | INFO     | all data control threads have been joined
[2026-01-08 13:48:52] 2026-01-08 12:47:58,847 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 13:48:52] 2026-01-08 12:47:58,848 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 13:48:52] 2026-01-08 12:47:58,848 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:48:52] 2026-01-08 12:47:58,848 | INFO     | will abort loop
[2026-01-08 13:48:52] 2026-01-08 12:47:58,896 | INFO     | all payload control threads have been joined
[2026-01-08 13:48:52] 2026-01-08 12:47:59,010 | INFO     | all job control threads have been joined
[2026-01-08 13:48:52] 2026-01-08 12:47:59,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:48:52] 2026-01-08 12:47:59,477 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:48:52] 2026-01-08 12:47:59,484 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:47:59,538 | INFO     | [job] validate thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:47:59,781 | INFO     | [data] control thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:47:59,854 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:47:59,903 | INFO     | [payload] control thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:47:59,933 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:47:59,936 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,019 | INFO     | [job] control thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,084 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:48:52] 2026-01-08 12:48:00,233 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,310 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,459 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,557 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:00,882 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:01,484 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:04,118 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:48:52] 2026-01-08 12:48:27,587 | INFO     | PID=8330 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 13:48:52] 2026-01-08 12:48:27,587 | INFO     | .. there are 2 such processes running
[2026-01-08 13:48:52] 2026-01-08 12:48:27,587 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:48:52] 2026-01-08 12:48:27,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:48:52] 2026-01-08 12:48:27,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:48:52] 2026-01-08 12:48:39,090 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:48:52] 2026-01-08 12:48:40,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107702310720)>', '<ExcThread(monitor, started 140106597922560)>']
[2026-01-08 13:48:52] 2026-01-08 12:48:41,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:48:52] 2026-01-08 12:48:41,672 | INFO     | [monitor] control thread has ended
[2026-01-08 13:48:52] 2026-01-08 12:48:45,888 | INFO     | all workflow threads have been joined
[2026-01-08 13:48:52] 2026-01-08 12:48:45,889 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:48:52] 2026-01-08 12:48:45,889 | INFO     | traces error code: 0
[2026-01-08 13:48:52] 2026-01-08 12:48:45,889 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:48:52] 2026-01-08 12:48:46,380 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:48:52] 2026-01-08 12:48:46,444 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:48:52] 2026-01-08 12:48:46,543 [wrapper] pilotpid: 8330
[2026-01-08 13:48:52] 2026-01-08 12:48:46,622 [wrapper] Pilot exit status: 0
[2026-01-08 13:48:52] 2026-01-08 12:48:47,023 [wrapper] pandaids: 6962319935
[2026-01-08 13:48:52] 2026-01-08 12:48:48,371 [wrapper] cleanup supervisor_pilot 16460 8331
[2026-01-08 13:48:52] 2026-01-08 12:48:48,499 [wrapper] Test setup, not cleaning
[2026-01-08 13:48:52] 2026-01-08 12:48:48,604 [wrapper] apfmon messages muted
[2026-01-08 13:48:52] 2026-01-08 12:48:48,699 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:48:52] 2026-01-08 12:48:48,796 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:48:52]  *** Error codes and diagnostics ***
[2026-01-08 13:48:52]     "exeErrorCode": 0,
[2026-01-08 13:48:52]     "exeErrorDiag": "",
[2026-01-08 13:48:52]     "pilotErrorCode": 0,
[2026-01-08 13:48:52]     "pilotErrorDiag": "",
[2026-01-08 13:48:52]  *** Listing of results directory ***
[2026-01-08 13:48:52] total 452388
[2026-01-08 13:48:52] -rwx------. 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc       100 Jan  8 07:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:48:52] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 07:21 run_atlas
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc       105 Jan  8 07:21 job.xml
[2026-01-08 13:48:52] -rw-r--r--. 2 boinc boinc 223811409 Jan  8 07:21 EVNT.47898824._000597.pool.root.1
[2026-01-08 13:48:52] -rw-r--r--. 2 boinc boinc    592398 Jan  8 07:21 input.tar.gz
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc      6390 Jan  8 07:21 init_data.xml
[2026-01-08 13:48:52] -rw-r--r--. 2 boinc boinc     15847 Jan  8 07:21 start_atlas.sh
[2026-01-08 13:48:52] drwxrwx--x. 2 boinc boinc        68 Jan  8 07:21 shared
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc         0 Jan  8 07:21 boinc_lockfile
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc      2519 Jan  8 07:21 pandaJob.out
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc    989827 Jan  8 07:25 agis_schedconf.cvmfs.json
[2026-01-08 13:48:52] drwx------. 5 boinc boinc      4096 Jan  8 07:26 pilot3
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc 228302940 Jan  8 13:44 HITS.47898826._013786.pool.root.1
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc       531 Jan  8 13:44 boinc_task_state.xml
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc      1029 Jan  8 13:45 memory_monitor_summary.json
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc   1516240 Jan  8 13:45 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc    576443 Jan  8 13:45 log.47898826._013786.job.log.tgz.1
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc        95 Jan  8 13:47 pilot_heartbeat.json
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc      7779 Jan  8 13:47 heartbeat.json
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc      5069 Jan  8 13:48 pilotlog.txt
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc        28 Jan  8 13:48 wrapper_checkpoint.txt
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc      8192 Jan  8 13:48 boinc_mmap_file
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc   3034900 Jan  8 13:48 log.47898826._013786.job.log.1
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc       357 Jan  8 13:48 output.list
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc       620 Jan  8 13:48 runtime_log
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc   3635200 Jan  8 13:48 result.tar.gz
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc      8817 Jan  8 13:48 runtime_log.err
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc       657 Jan  8 13:48 AsCLDmjopx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9xiKDmlVaWdn.diag
[2026-01-08 13:48:52] -rw-r--r--. 1 boinc boinc     20764 Jan  8 13:48 stderr.txt
[2026-01-08 13:48:52] HITS file was successfully produced:
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc 228302940 Jan  8 13:44 shared/HITS.pool.root.1
[2026-01-08 13:48:52]  *** Contents of shared directory: ***
[2026-01-08 13:48:52] total 445672
[2026-01-08 13:48:52] -rw-r--r--. 2 boinc boinc 223811409 Jan  8 07:21 ATLAS.root_0
[2026-01-08 13:48:52] -rw-r--r--. 2 boinc boinc    592398 Jan  8 07:21 input.tar.gz
[2026-01-08 13:48:52] -rw-r--r--. 2 boinc boinc     15847 Jan  8 07:21 start_atlas.sh
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc 228302940 Jan  8 13:44 HITS.pool.root.1
[2026-01-08 13:48:52] -rw-------. 1 boinc boinc   3635200 Jan  8 13:48 result.tar.gz
13:48:53 (4591): run_atlas exited; CPU time 84587.847652
13:48:53 (4591): called boinc_finish(0)

</stderr_txt>
]]>

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