Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:08:24 (25926): wrapper (7.7.26015): starting
07:08:24 (25926): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 07:08:24] Arguments: --nthreads 8
[2026-01-08 07:08:24] Threads: 8
[2026-01-08 07:08:24] Checking for CVMFS
[2026-01-08 07:08:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 07:08:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 07:08:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 07:08:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 07:08:28] 2.11.2.0 10876 33594 96908 154893 0 61 17062808 25165825 96 130560 0 15273092 99.774 9558213 3654 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 07:08:28] CVMFS is ok
[2026-01-08 07:08:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:08:28] Checking for apptainer binary...
[2026-01-08 07:08:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 07:08:28] Running /usr/bin/apptainer --version
[2026-01-08 07:08:28] apptainer version 1.3.2-1.el7
[2026-01-08 07:08:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:08:47] cg-vwn386.simple-grid.lan
[2026-01-08 07:08:47] apptainer works
[2026-01-08 07:08:48] Set ATHENA_PROC_NUMBER=8
[2026-01-08 07:08:48] Set ATHENA_CORE_NUMBER=8
[2026-01-08 07:08:48] Starting ATLAS job with PandaID=6962319391
[2026-01-08 07:08:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:28:56]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:28:56] 2026-01-08 12:27:57,736 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 13:28:56] 2026-01-08 12:27:57,737 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 13:28:56] 2026-01-08 12:27:57,739 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6962319391/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,740 | INFO     | extracted standard info from prmon json
[2026-01-08 13:28:56] 2026-01-08 12:27:57,740 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 13:28:56] 2026-01-08 12:27:57,740 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 13:28:56] 2026-01-08 12:27:57,741 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 13:28:56] 2026-01-08 12:27:57,741 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 13:28:56] 2026-01-08 12:27:57,757 | INFO     | fitting pss+swap vs Time
[2026-01-08 13:28:56] 2026-01-08 12:27:57,758 | INFO     | sum of square deviations: 14227353269.5
[2026-01-08 13:28:56] 2026-01-08 12:27:57,762 | INFO     | sum of deviations: 173090990999.50003
[2026-01-08 13:28:56] 2026-01-08 12:27:57,762 | INFO     | mean x: 1767864211.5
[2026-01-08 13:28:56] 2026-01-08 12:27:57,762 | INFO     | mean y: 2450111.3826815644
[2026-01-08 13:28:56] 2026-01-08 12:27:57,762 | INFO     | intersect: -21505511525.9429
[2026-01-08 13:28:56] 2026-01-08 12:27:57,763 | INFO     | chi2: 8.989296279032969
[2026-01-08 13:28:56] 2026-01-08 12:27:57,764 | INFO     | sum of square deviations: 13639518992.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,768 | INFO     | sum of deviations: 194192049297.99997
[2026-01-08 13:28:56] 2026-01-08 12:27:57,777 | INFO     | mean x: 1767864059.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,777 | INFO     | mean y: 2455515.5580736543
[2026-01-08 13:28:56] 2026-01-08 12:27:57,777 | INFO     | intersect: -25167430951.76159
[2026-01-08 13:28:56] 2026-01-08 12:27:57,778 | INFO     | chi2: 8.273515761316792
[2026-01-08 13:28:56] 2026-01-08 12:27:57,778 | INFO     | current chi2=8.273515761316792 (change=7.9625867865284885 %)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,778 | INFO     | right removable region: 352
[2026-01-08 13:28:56] 2026-01-08 12:27:57,779 | INFO     | sum of square deviations: 13639518992.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,783 | INFO     | sum of deviations: 45662156462.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,783 | INFO     | mean x: 1767864364.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,783 | INFO     | mean y: 2483158.1416430594
[2026-01-08 13:28:56] 2026-01-08 12:27:57,784 | INFO     | intersect: -5915943968.204201
[2026-01-08 13:28:56] 2026-01-08 12:27:57,784 | INFO     | chi2: 3.9342199512204075
[2026-01-08 13:28:56] 2026-01-08 12:27:57,784 | INFO     | current chi2=3.9342199512204075 (change=56.23439444979963 %)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,785 | INFO     | sum of square deviations: 13068103627.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,789 | INFO     | sum of deviations: -51116219471.000015
[2026-01-08 13:28:56] 2026-01-08 12:27:57,789 | INFO     | mean x: 1767864516.5
[2026-01-08 13:28:56] 2026-01-08 12:27:57,789 | INFO     | mean y: 2508961.396551724
[2026-01-08 13:28:56] 2026-01-08 12:27:57,790 | INFO     | intersect: 6917555949.063612
[2026-01-08 13:28:56] 2026-01-08 12:27:57,790 | INFO     | chi2: 1.153764385067798
[2026-01-08 13:28:56] 2026-01-08 12:27:57,790 | INFO     | current chi2=1.153764385067798 (change=70.67361765805958 %)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,791 | INFO     | sum of square deviations: 12512874612.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,801 | INFO     | sum of deviations: -69533403582.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,802 | INFO     | mean x: 1767864669.0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,802 | INFO     | mean y: 2513990.5131195337
[2026-01-08 13:28:56] 2026-01-08 12:27:57,802 | INFO     | intersect: 9826447444.625145
[2026-01-08 13:28:56] 2026-01-08 12:27:57,802 | INFO     | chi2: 0.9834888001524935
[2026-01-08 13:28:56] 2026-01-08 12:27:57,803 | INFO     | current chi2=0.9834888001524935 (change=14.758263222460172 %)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,803 | INFO     | left removable region: 30
[2026-01-08 13:28:56] 2026-01-08 12:27:57,803 | INFO     | sum of square deviations: 10352419220.5
[2026-01-08 13:28:56] 2026-01-08 12:27:57,807 | INFO     | sum of deviations: -20589245484.500008
[2026-01-08 13:28:56] 2026-01-08 12:27:57,807 | INFO     | mean x: 1767864943.5
[2026-01-08 13:28:56] 2026-01-08 12:27:57,807 | INFO     | mean y: 2512863.4254658385
[2026-01-08 13:28:56] 2026-01-08 12:27:57,807 | INFO     | intersect: 3518503138.730917
[2026-01-08 13:28:56] 2026-01-08 12:27:57,808 | INFO     | chi2: 0.12742603094669067
[2026-01-08 13:28:56] 2026-01-08 12:27:57,808 | INFO     | current memory leak: -1.99 B/s (using 322 data points, chi2=0.13)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,809 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,809 | INFO     | ..............................
[2026-01-08 13:28:56] 2026-01-08 12:27:57,809 | INFO     | . Timing measurements:
[2026-01-08 13:28:56] 2026-01-08 12:27:57,809 | INFO     | . get job = 0 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | . initial setup = 10 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | . payload setup = 144 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | . stage-in = 0 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | . payload execution = 22012 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | . stage-out = 4 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | . log creation = 1 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,810 | INFO     | ..............................
[2026-01-08 13:28:56] 2026-01-08 12:27:57,947 | INFO     | 
[2026-01-08 13:28:56] 2026-01-08 12:27:57,947 | INFO     | job summary report
[2026-01-08 13:28:56] 2026-01-08 12:27:57,947 | INFO     | --------------------------------------------------
[2026-01-08 13:28:56] 2026-01-08 12:27:57,947 | INFO     | PanDA job id: 6962319391
[2026-01-08 13:28:56] 2026-01-08 12:27:57,947 | INFO     | task id: 47898826
[2026-01-08 13:28:56] 2026-01-08 12:27:57,948 | INFO     | errors: (none)
[2026-01-08 13:28:56] 2026-01-08 12:27:57,955 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 13:28:56] 2026-01-08 12:27:57,955 | INFO     | pilot state: finished 
[2026-01-08 13:28:56] 2026-01-08 12:27:57,955 | INFO     | transexitcode: 0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,955 | INFO     | exeerrorcode: 0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,955 | INFO     | exeerrordiag: 
[2026-01-08 13:28:56] 2026-01-08 12:27:57,955 | INFO     | exitcode: 0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | exitmsg: OK
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | cpuconsumptiontime: 82412 s
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | nevents: 400
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | neventsw: 0
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | pid: 3756
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | pgrp: 3756
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | corecount: 8
[2026-01-08 13:28:56] 2026-01-08 12:27:57,956 | INFO     | event service: False
[2026-01-08 13:28:56] 2026-01-08 12:27:57,957 | INFO     | sizes: {0: 2283799, 1: 2283998, 12: 2283998, 23: 2284026, 33: 2284054, 44: 2284110, 55: 2284266, 66: 2284294, 76: 2284322, 87: 2284378, 98: 2284406, 106: 2284976, 
[2026-01-08 13:28:56] 2026-01-08 12:27:57,957 | INFO     | --------------------------------------------------
[2026-01-08 13:28:56] 2026-01-08 12:27:57,957 | INFO     | 
[2026-01-08 13:28:56] 2026-01-08 12:27:57,957 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-08 13:28:56] 2026-01-08 12:27:58,642 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,645 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 13:28:56] 2026-01-08 12:27:58,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,645 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 13:28:56] 2026-01-08 12:27:58,645 | INFO     | job 6962319391 has completed (purged errors)
[2026-01-08 13:28:56] 2026-01-08 12:27:58,645 | INFO     | overall cleanup function is called
[2026-01-08 13:28:56] 2026-01-08 12:27:59,657 | INFO     | --- collectZombieJob: --- 10, [3756]
[2026-01-08 13:28:56] 2026-01-08 12:27:59,657 | INFO     | zombie collector waiting for pid 3756
[2026-01-08 13:28:56] 2026-01-08 12:27:59,657 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 13:28:56] 2026-01-08 12:27:59,657 | INFO     | collected zombie processes
[2026-01-08 13:28:56] 2026-01-08 12:27:59,657 | INFO     | will attempt to kill all subprocesses of pid=3756
[2026-01-08 13:28:56] 2026-01-08 12:27:59,751 | INFO     | process IDs to be killed: [3756] (in reverse order)
[2026-01-08 13:28:56] 2026-01-08 12:28:00,540 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 13:28:56] 2026-01-08 12:28:00,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 13:28:56] 2026-01-08 12:28:00,550 | INFO     | did not find any defunct processes belonging to 3756
[2026-01-08 13:28:56] 2026-01-08 12:28:00,551 | INFO     | did not find any defunct processes belonging to 3756
[2026-01-08 13:28:56] 2026-01-08 12:28:00,552 | INFO     | ready for new job
[2026-01-08 13:28:56] 2026-01-08 12:28:00,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 13:28:56] 2026-01-08 12:28:00,554 | INFO     | ***************************************
[2026-01-08 13:28:56] 2026-01-08 12:28:00,555 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 13:28:56] 2026-01-08 12:28:00,555 | INFO     | ***************************************
[2026-01-08 13:28:56] 2026-01-08 12:28:00,555 | INFO     | 
[2026-01-08 13:28:56] 2026-01-08 12:28:00,555 | INFO     | pilot is running in a VM
[2026-01-08 13:28:56] 2026-01-08 12:28:00,556 | INFO     | architecture information:
[2026-01-08 13:28:56] 2026-01-08 12:28:00,573 | INFO     | executing command: cat /etc/os-release
[2026-01-08 13:28:56] 2026-01-08 12:28:00,916 | INFO     | cat /etc/os-release:
[2026-01-08 13:28:56] NAME="CentOS Linux"
[2026-01-08 13:28:56] VERSION="7 (Core)"
[2026-01-08 13:28:56] ID="centos"
[2026-01-08 13:28:56] ID_LIKE="rhel fedora"
[2026-01-08 13:28:56] VERSION_ID="7"
[2026-01-08 13:28:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:28:56] ANSI_COLOR="0;31"
[2026-01-08 13:28:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:28:56] HOME_URL="https://www.centos.org/"
[2026-01-08 13:28:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:28:56] 
[2026-01-08 13:28:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:28:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:28:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:28:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:28:56] 
[2026-01-08 13:28:56] 2026-01-08 12:28:00,916 | INFO     | ***************************************
[2026-01-08 13:28:56] 2026-01-08 12:28:01,421 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-08 13:28:56] 2026-01-08 12:28:01,717 | INFO     | sufficient remaining disk space (496209231872 B)
[2026-01-08 13:28:56] 2026-01-08 12:28:01,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:28:56] 2026-01-08 12:28:01,725 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:28:56] 2026-01-08 12:28:01,725 | INFO     | update_server=False
[2026-01-08 13:28:56] 2026-01-08 12:28:01,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:28:56] 2026-01-08 12:28:01,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:28:56] 2026-01-08 12:28:01,726 | INFO     | aborting loop
[2026-01-08 13:28:56] 2026-01-08 12:28:01,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:28:56] 2026-01-08 12:28:01,930 | INFO     | all data control threads have been joined
[2026-01-08 13:28:56] 2026-01-08 12:28:02,441 | INFO     | all payload control threads have been joined
[2026-01-08 13:28:56] 2026-01-08 12:28:02,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:28:56] 2026-01-08 12:28:02,726 | INFO     | all job control threads have been joined
[2026-01-08 13:28:56] 2026-01-08 12:28:02,732 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:02,733 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:02,936 | INFO     | [data] control thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:02,941 | INFO     | [job] validate thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:02,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:28:56] 2026-01-08 12:28:02,971 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:02,972 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,256 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,447 | INFO     | [payload] control thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,502 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,524 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,699 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,732 | INFO     | [job] control thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,740 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,795 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:03,967 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:06,470 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:28:56] 2026-01-08 12:28:12,942 [wrapper] supervise_pilot (15 min periods counter: 26)
[2026-01-08 13:28:56] 2026-01-08 12:28:30,070 | INFO     | PID=29674 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 13:28:56] 2026-01-08 12:28:30,070 | INFO     | .. there are 2 such processes running
[2026-01-08 13:28:56] 2026-01-08 12:28:30,071 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:28:56] 2026-01-08 12:28:30,071 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:28:56] 2026-01-08 12:28:30,071 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:28:56] 2026-01-08 12:28:43,033 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:28:56] 2026-01-08 12:28:44,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139921099306816)>', '<ExcThread(monitor, started 139920790230784)>']
[2026-01-08 13:28:56] 2026-01-08 12:28:45,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:28:56] 2026-01-08 12:28:45,161 | INFO     | [monitor] control thread has ended
[2026-01-08 13:28:56] 2026-01-08 12:28:49,717 | INFO     | all workflow threads have been joined
[2026-01-08 13:28:56] 2026-01-08 12:28:49,717 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:28:56] 2026-01-08 12:28:49,717 | INFO     | traces error code: 0
[2026-01-08 13:28:56] 2026-01-08 12:28:49,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:28:56] 2026-01-08 12:28:50,149 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:28:56] 2026-01-08 12:28:50,288 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:28:56] 2026-01-08 12:28:50,397 [wrapper] pilotpid: 29674
[2026-01-08 13:28:56] 2026-01-08 12:28:50,476 [wrapper] Pilot exit status: 0
[2026-01-08 13:28:56] 2026-01-08 12:28:51,088 [wrapper] pandaids: 6962319391
[2026-01-08 13:28:56] 2026-01-08 12:28:52,184 [wrapper] cleanup supervisor_pilot  7805 29675
[2026-01-08 13:28:56] 2026-01-08 12:28:52,271 [wrapper] Test setup, not cleaning
[2026-01-08 13:28:56] 2026-01-08 12:28:52,336 [wrapper] apfmon messages muted
[2026-01-08 13:28:56] 2026-01-08 12:28:52,454 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:28:56] 2026-01-08 12:28:52,560 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:28:56]  *** Error codes and diagnostics ***
[2026-01-08 13:28:56]     "exeErrorCode": 0,
[2026-01-08 13:28:56]     "exeErrorDiag": "",
[2026-01-08 13:28:56]     "pilotErrorCode": 0,
[2026-01-08 13:28:56]     "pilotErrorDiag": "",
[2026-01-08 13:28:56]  *** Listing of results directory ***
[2026-01-08 13:28:56] total 445696
[2026-01-08 13:28:56] -rwx------. 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc       100 Jan  8 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:28:56] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 07:08 run_atlas
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc       105 Jan  8 07:08 job.xml
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc      6391 Jan  8 07:08 init_data.xml
[2026-01-08 13:28:56] -rw-r--r--. 2 boinc boinc 225935860 Jan  8 07:08 EVNT.47898824._000578.pool.root.1
[2026-01-08 13:28:56] -rw-r--r--. 2 boinc boinc     15847 Jan  8 07:08 start_atlas.sh
[2026-01-08 13:28:56] drwxrwx--x. 2 boinc boinc        68 Jan  8 07:08 shared
[2026-01-08 13:28:56] -rw-r--r--. 2 boinc boinc    592396 Jan  8 07:08 input.tar.gz
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc         0 Jan  8 07:08 boinc_lockfile
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc      2519 Jan  8 07:08 pandaJob.out
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc    989827 Jan  8 07:12 agis_schedconf.cvmfs.json
[2026-01-08 13:28:56] drwx------. 5 boinc boinc      4096 Jan  8 07:13 pilot3
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc 219483359 Jan  8 13:24 HITS.47898826._013299.pool.root.1
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc       531 Jan  8 13:24 boinc_task_state.xml
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc      1016 Jan  8 13:25 memory_monitor_summary.json
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc   1516240 Jan  8 13:26 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc    556055 Jan  8 13:26 log.47898826._013299.job.log.tgz.1
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc        95 Jan  8 13:27 pilot_heartbeat.json
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc      7795 Jan  8 13:27 heartbeat.json
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc      8192 Jan  8 13:28 boinc_mmap_file
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc        28 Jan  8 13:28 wrapper_checkpoint.txt
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc      4885 Jan  8 13:28 pilotlog.txt
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc   2978850 Jan  8 13:28 log.47898826._013299.job.log.1
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc       357 Jan  8 13:28 output.list
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc       620 Jan  8 13:28 runtime_log
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc   3553280 Jan  8 13:28 result.tar.gz
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc      8833 Jan  8 13:28 runtime_log.err
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc       657 Jan  8 13:28 BWRKDmjopx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTxiKDmvyabJn.diag
[2026-01-08 13:28:56] -rw-r--r--. 1 boinc boinc     20754 Jan  8 13:28 stderr.txt
[2026-01-08 13:28:56] HITS file was successfully produced:
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc 219483359 Jan  8 13:24 shared/HITS.pool.root.1
[2026-01-08 13:28:56]  *** Contents of shared directory: ***
[2026-01-08 13:28:56] total 439052
[2026-01-08 13:28:56] -rw-r--r--. 2 boinc boinc 225935860 Jan  8 07:08 ATLAS.root_0
[2026-01-08 13:28:56] -rw-r--r--. 2 boinc boinc     15847 Jan  8 07:08 start_atlas.sh
[2026-01-08 13:28:56] -rw-r--r--. 2 boinc boinc    592396 Jan  8 07:08 input.tar.gz
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc 219483359 Jan  8 13:24 HITS.pool.root.1
[2026-01-08 13:28:56] -rw-------. 1 boinc boinc   3553280 Jan  8 13:28 result.tar.gz
13:28:57 (25926): run_atlas exited; CPU time 82644.139104
13:28:57 (25926): called boinc_finish(0)

</stderr_txt>
]]>

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