Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:54:41 (11628): wrapper (7.7.26015): starting
00:54:41 (11628): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 00:54:41] Arguments: --nthreads 8
[2026-01-08 00:54:41] Threads: 8
[2026-01-08 00:54:41] Checking for CVMFS
[2026-01-08 00:54:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 00:54:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 00:54:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 00:54:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 00:54:47] 2.11.2.0 10876 33220 96648 154884 0 11 16810818 25165824 96 130560 0 15145235 99.795 9476173 3828 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 00:54:47] CVMFS is ok
[2026-01-08 00:54:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 00:54:47] Checking for apptainer binary...
[2026-01-08 00:54:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 00:54:47] Running /usr/bin/apptainer --version
[2026-01-08 00:54:47] apptainer version 1.3.2-1.el7
[2026-01-08 00:54:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 00:55:51] cg-vwn386.simple-grid.lan
[2026-01-08 00:55:51] apptainer works
[2026-01-08 00:55:51] Set ATHENA_PROC_NUMBER=8
[2026-01-08 00:55:51] Set ATHENA_CORE_NUMBER=8
[2026-01-08 00:55:51] Starting ATLAS job with PandaID=6962321614
[2026-01-08 00:55:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 07:08:19]  *** The last 200 lines of the pilot log: ***
[2026-01-08 07:08:19] 2026-01-08 06:07:06,897 | INFO     | time since job start (21937s) is within the limit (174528.0s)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,474 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 07:08:19] 2026-01-08 06:07:07,475 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 07:08:19] 2026-01-08 06:07:07,477 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6962321614/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,478 | INFO     | extracted standard info from prmon json
[2026-01-08 07:08:19] 2026-01-08 06:07:07,478 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 07:08:19] 2026-01-08 06:07:07,478 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 07:08:19] 2026-01-08 06:07:07,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 07:08:19] 2026-01-08 06:07:07,479 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 07:08:19] 2026-01-08 06:07:07,487 | INFO     | fitting pss+swap vs Time
[2026-01-08 07:08:19] 2026-01-08 06:07:07,487 | INFO     | sum of square deviations: 13181084350.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,491 | INFO     | sum of deviations: 183388759039.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,492 | INFO     | mean x: 1767841663.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,492 | INFO     | mean y: 2447498.4441260747
[2026-01-08 07:08:19] 2026-01-08 06:07:07,492 | INFO     | intersect: -24593578150.615017
[2026-01-08 07:08:19] 2026-01-08 06:07:07,493 | INFO     | chi2: 8.886684157176992
[2026-01-08 07:08:19] 2026-01-08 06:07:07,493 | INFO     | sum of square deviations: 12622636670.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,497 | INFO     | sum of deviations: 203698935196.50006
[2026-01-08 07:08:19] 2026-01-08 06:07:07,498 | INFO     | mean x: 1767841510.5
[2026-01-08 07:08:19] 2026-01-08 06:07:07,498 | INFO     | mean y: 2452971.3168604653
[2026-01-08 07:08:19] 2026-01-08 06:07:07,498 | INFO     | intersect: -28526248495.697815
[2026-01-08 07:08:19] 2026-01-08 06:07:07,498 | INFO     | chi2: 8.172301158662242
[2026-01-08 07:08:19] 2026-01-08 06:07:07,499 | INFO     | current chi2=8.172301158662242 (change=8.03880261613446 %)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,499 | INFO     | right removable region: 343
[2026-01-08 07:08:19] 2026-01-08 06:07:07,499 | INFO     | sum of square deviations: 12622636670.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,509 | INFO     | sum of deviations: 56245669272.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,510 | INFO     | mean x: 1767841815.5
[2026-01-08 07:08:19] 2026-01-08 06:07:07,510 | INFO     | mean y: 2482213.418604651
[2026-01-08 07:08:19] 2026-01-08 06:07:07,510 | INFO     | intersect: -7874908911.697654
[2026-01-08 07:08:19] 2026-01-08 06:07:07,511 | INFO     | chi2: 3.6142749040199513
[2026-01-08 07:08:19] 2026-01-08 06:07:07,511 | INFO     | current chi2=3.6142749040199513 (change=59.32931968667954 %)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,512 | INFO     | sum of square deviations: 12080189290.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,515 | INFO     | sum of deviations: -34422951785.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,516 | INFO     | mean x: 1767841968.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,516 | INFO     | mean y: 2507671.9233038346
[2026-01-08 07:08:19] 2026-01-08 06:07:07,516 | INFO     | intersect: 5040039565.429214
[2026-01-08 07:08:19] 2026-01-08 06:07:07,516 | INFO     | chi2: 1.03890732952957
[2026-01-08 07:08:19] 2026-01-08 06:07:07,517 | INFO     | current chi2=1.03890732952957 (change=71.2554424575161 %)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,517 | INFO     | sum of square deviations: 11553509647.5
[2026-01-08 07:08:19] 2026-01-08 06:07:07,521 | INFO     | sum of deviations: -56147708273.99999
[2026-01-08 07:08:19] 2026-01-08 06:07:07,521 | INFO     | mean x: 1767842120.5
[2026-01-08 07:08:19] 2026-01-08 06:07:07,521 | INFO     | mean y: 2513941.754491018
[2026-01-08 07:08:19] 2026-01-08 06:07:07,522 | INFO     | intersect: 8593867278.080473
[2026-01-08 07:08:19] 2026-01-08 06:07:07,522 | INFO     | chi2: 0.8562709960523172
[2026-01-08 07:08:19] 2026-01-08 06:07:07,522 | INFO     | current chi2=0.8562709960523172 (change=17.579655883258898 %)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,523 | INFO     | left removable region: 30
[2026-01-08 07:08:19] 2026-01-08 06:07:07,523 | INFO     | sum of square deviations: 9508390372.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,527 | INFO     | sum of deviations: -29603638794.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,527 | INFO     | mean x: 1767842395.0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,527 | INFO     | mean y: 2519470.6869009584
[2026-01-08 07:08:19] 2026-01-08 06:07:07,527 | INFO     | intersect: 5506560181.974167
[2026-01-08 07:08:19] 2026-01-08 06:07:07,542 | INFO     | chi2: 0.05727149455589431
[2026-01-08 07:08:19] 2026-01-08 06:07:07,542 | INFO     | current memory leak: -3.11 B/s (using 313 data points, chi2=0.06)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,543 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,543 | INFO     | ..............................
[2026-01-08 07:08:19] 2026-01-08 06:07:07,543 | INFO     | . Timing measurements:
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . get job = 0 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . initial setup = 10 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . payload setup = 158 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . stage-in = 0 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . payload execution = 21430 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . stage-out = 4 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | . log creation = 2 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,544 | INFO     | ..............................
[2026-01-08 07:08:19] 2026-01-08 06:07:07,715 | INFO     | 
[2026-01-08 07:08:19] 2026-01-08 06:07:07,715 | INFO     | job summary report
[2026-01-08 07:08:19] 2026-01-08 06:07:07,715 | INFO     | --------------------------------------------------
[2026-01-08 07:08:19] 2026-01-08 06:07:07,715 | INFO     | PanDA job id: 6962321614
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | task id: 47898826
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | errors: (none)
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | pilot state: finished 
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | transexitcode: 0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | exeerrorcode: 0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | exeerrordiag: 
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | exitcode: 0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | exitmsg: OK
[2026-01-08 07:08:19] 2026-01-08 06:07:07,716 | INFO     | cpuconsumptiontime: 80424 s
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | nevents: 400
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | neventsw: 0
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | pid: 22135
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | pgrp: 22135
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | corecount: 8
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | event service: False
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | sizes: {0: 2283799, 1: 2283998, 12: 2283998, 22: 2284026, 33: 2284054, 44: 2284110, 55: 2284266, 65: 2284294, 76: 2284322, 87: 2284378, 98: 2284406, 108: 2284714, 
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | --------------------------------------------------
[2026-01-08 07:08:19] 2026-01-08 06:07:07,717 | INFO     | 
[2026-01-08 07:08:19] 2026-01-08 06:07:07,718 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-08 07:08:19] 2026-01-08 06:07:08,431 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,431 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,431 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,431 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,432 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | job 6962321614 has completed (purged errors)
[2026-01-08 07:08:19] 2026-01-08 06:07:08,433 | INFO     | overall cleanup function is called
[2026-01-08 07:08:19] 2026-01-08 06:07:09,441 | INFO     | --- collectZombieJob: --- 10, [22135]
[2026-01-08 07:08:19] 2026-01-08 06:07:09,441 | INFO     | zombie collector waiting for pid 22135
[2026-01-08 07:08:19] 2026-01-08 06:07:09,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 07:08:19] 2026-01-08 06:07:09,441 | INFO     | collected zombie processes
[2026-01-08 07:08:19] 2026-01-08 06:07:09,441 | INFO     | will attempt to kill all subprocesses of pid=22135
[2026-01-08 07:08:19] 2026-01-08 06:07:09,532 | INFO     | process IDs to be killed: [22135] (in reverse order)
[2026-01-08 07:08:19] 2026-01-08 06:07:10,240 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 07:08:19] 2026-01-08 06:07:10,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 07:08:19] 2026-01-08 06:07:10,249 | INFO     | did not find any defunct processes belonging to 22135
[2026-01-08 07:08:19] 2026-01-08 06:07:10,251 | INFO     | did not find any defunct processes belonging to 22135
[2026-01-08 07:08:19] 2026-01-08 06:07:10,251 | INFO     | ready for new job
[2026-01-08 07:08:19] 2026-01-08 06:07:10,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 07:08:19] 2026-01-08 06:07:10,254 | INFO     | ***************************************
[2026-01-08 07:08:19] 2026-01-08 06:07:10,254 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 07:08:19] 2026-01-08 06:07:10,254 | INFO     | ***************************************
[2026-01-08 07:08:19] 2026-01-08 06:07:10,254 | INFO     | 
[2026-01-08 07:08:19] 2026-01-08 06:07:10,255 | INFO     | pilot is running in a VM
[2026-01-08 07:08:19] 2026-01-08 06:07:10,255 | INFO     | architecture information:
[2026-01-08 07:08:19] 2026-01-08 06:07:10,268 | INFO     | executing command: cat /etc/os-release
[2026-01-08 07:08:19] 2026-01-08 06:07:10,555 | INFO     | cat /etc/os-release:
[2026-01-08 07:08:19] NAME="CentOS Linux"
[2026-01-08 07:08:19] VERSION="7 (Core)"
[2026-01-08 07:08:19] ID="centos"
[2026-01-08 07:08:19] ID_LIKE="rhel fedora"
[2026-01-08 07:08:19] VERSION_ID="7"
[2026-01-08 07:08:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 07:08:19] ANSI_COLOR="0;31"
[2026-01-08 07:08:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 07:08:19] HOME_URL="https://www.centos.org/"
[2026-01-08 07:08:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 07:08:19] 
[2026-01-08 07:08:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 07:08:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 07:08:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 07:08:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 07:08:19] 
[2026-01-08 07:08:19] 2026-01-08 06:07:10,556 | INFO     | ***************************************
[2026-01-08 07:08:19] 2026-01-08 06:07:11,059 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-08 07:08:19] 2026-01-08 06:07:11,375 | INFO     | sufficient remaining disk space (496822648832 B)
[2026-01-08 07:08:19] 2026-01-08 06:07:11,376 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 07:08:19] 2026-01-08 06:07:11,376 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 07:08:19] 2026-01-08 06:07:11,376 | INFO     | update_server=False
[2026-01-08 07:08:19] 2026-01-08 06:07:11,376 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 07:08:19] 2026-01-08 06:07:11,423 | INFO     | all data control threads have been joined
[2026-01-08 07:08:19] 2026-01-08 06:07:12,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 07:08:19] 2026-01-08 06:07:12,310 | INFO     | aborting loop
[2026-01-08 07:08:19] 2026-01-08 06:07:12,381 | INFO     | [job] retrieve thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:12,429 | INFO     | [data] control thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:12,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 07:08:19] 2026-01-08 06:07:12,540 | INFO     | [payload] failed_post thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:12,589 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:12,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 07:08:19] 2026-01-08 06:07:12,791 | INFO     | all payload control threads have been joined
[2026-01-08 07:08:19] 2026-01-08 06:07:12,922 | INFO     | [data] copytool_in thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:12,970 | INFO     | all job control threads have been joined
[2026-01-08 07:08:19] 2026-01-08 06:07:13,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 07:08:19] 2026-01-08 06:07:13,161 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,316 | INFO     | [job] job monitor thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,387 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,398 | INFO     | [payload] validate_post thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,580 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,735 | INFO     | [job] queue monitor thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,797 | INFO     | [payload] control thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,860 | INFO     | [job] validate thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:13,976 | INFO     | [job] control thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:14,493 | INFO     | [data] copytool_out thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:17,041 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 07:08:19] 2026-01-08 06:07:40,043 | INFO     | PID=15686 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 07:08:19] 2026-01-08 06:07:40,043 | INFO     | .. there are 2 such processes running
[2026-01-08 07:08:19] 2026-01-08 06:07:40,043 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 07:08:19] 2026-01-08 06:07:40,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 07:08:19] 2026-01-08 06:07:40,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 07:08:19] 2026-01-08 06:08:07,123 | INFO     | [monitor] cgroup control has ended
[2026-01-08 07:08:19] 2026-01-08 06:08:09,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436024616768)>', '<ExcThread(monitor, started 140435271960320)>']
[2026-01-08 07:08:19] 2026-01-08 06:08:09,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 07:08:19] 2026-01-08 06:08:09,218 | INFO     | [monitor] control thread has ended
[2026-01-08 07:08:19] 2026-01-08 06:08:14,092 | INFO     | all workflow threads have been joined
[2026-01-08 07:08:19] 2026-01-08 06:08:14,092 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 07:08:19] 2026-01-08 06:08:14,092 | INFO     | traces error code: 0
[2026-01-08 07:08:19] 2026-01-08 06:08:14,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 07:08:19] 2026-01-08 06:08:14,307 [wrapper] ==== pilot stdout END ====
[2026-01-08 07:08:19] 2026-01-08 06:08:14,312 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 07:08:19] 2026-01-08 06:08:14,319 [wrapper] pilotpid: 15686
[2026-01-08 07:08:19] 2026-01-08 06:08:14,420 [wrapper] Pilot exit status: 0
[2026-01-08 07:08:19] 2026-01-08 06:08:14,936 [wrapper] pandaids: 6962321614
[2026-01-08 07:08:19] 2026-01-08 06:08:15,853 [wrapper] cleanup supervisor_pilot 21516 15687
[2026-01-08 07:08:19] 2026-01-08 06:08:15,932 [wrapper] Test setup, not cleaning
[2026-01-08 07:08:19] 2026-01-08 06:08:16,058 [wrapper] apfmon messages muted
[2026-01-08 07:08:19] 2026-01-08 06:08:16,117 [wrapper] ==== wrapper stdout END ====
[2026-01-08 07:08:19] 2026-01-08 06:08:16,221 [wrapper] ==== wrapper stderr END ====
[2026-01-08 07:08:19]  *** Error codes and diagnostics ***
[2026-01-08 07:08:19]     "exeErrorCode": 0,
[2026-01-08 07:08:19]     "exeErrorDiag": "",
[2026-01-08 07:08:19]     "pilotErrorCode": 0,
[2026-01-08 07:08:19]     "pilotErrorDiag": "",
[2026-01-08 07:08:19]  *** Listing of results directory ***
[2026-01-08 07:08:19] total 448056
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 07:08:19] -rwx------. 1 boinc boinc     36322 Jan  7 22:06 runpilot2-wrapper.sh
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:11 queuedata.json
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc       100 Jan  8 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 07:08:19] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 00:54 run_atlas
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc       105 Jan  8 00:54 job.xml
[2026-01-08 07:08:19] -rw-r--r--. 2 boinc boinc 228525921 Jan  8 00:54 EVNT.47898824._000691.pool.root.1
[2026-01-08 07:08:19] -rw-r--r--. 2 boinc boinc    592400 Jan  8 00:54 input.tar.gz
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc      6391 Jan  8 00:54 init_data.xml
[2026-01-08 07:08:19] -rw-r--r--. 2 boinc boinc     15847 Jan  8 00:54 start_atlas.sh
[2026-01-08 07:08:19] drwxrwx--x. 2 boinc boinc        68 Jan  8 00:54 shared
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc         0 Jan  8 00:54 boinc_lockfile
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc      2519 Jan  8 00:55 pandaJob.out
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc    989785 Jan  8 01:01 agis_schedconf.cvmfs.json
[2026-01-08 07:08:19] drwx------. 5 boinc boinc      4096 Jan  8 01:01 pilot3
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc 219423015 Jan  8 07:03 HITS.47898826._014815.pool.root.1
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc       531 Jan  8 07:04 boinc_task_state.xml
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc      1011 Jan  8 07:05 memory_monitor_summary.json
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc   1516240 Jan  8 07:05 agis_ddmendpoints.agis.ALL.json
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc    568847 Jan  8 07:05 log.47898826._014815.job.log.tgz.1
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc        95 Jan  8 07:06 pilot_heartbeat.json
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc      7775 Jan  8 07:07 heartbeat.json
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc      8192 Jan  8 07:07 boinc_mmap_file
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc        28 Jan  8 07:07 wrapper_checkpoint.txt
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc      4885 Jan  8 07:08 pilotlog.txt
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc   2909698 Jan  8 07:08 log.47898826._014815.job.log.1
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc       357 Jan  8 07:08 output.list
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc       620 Jan  8 07:08 runtime_log
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc   3502080 Jan  8 07:08 result.tar.gz
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc      8833 Jan  8 07:08 runtime_log.err
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc       657 Jan  8 07:08 f8eMDmJupx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdrdKDmJCifin.diag
[2026-01-08 07:08:19] -rw-r--r--. 1 boinc boinc     20768 Jan  8 07:08 stderr.txt
[2026-01-08 07:08:19] HITS file was successfully produced:
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc 219423015 Jan  8 07:03 shared/HITS.pool.root.1
[2026-01-08 07:08:19]  *** Contents of shared directory: ***
[2026-01-08 07:08:19] total 441472
[2026-01-08 07:08:19] -rw-r--r--. 2 boinc boinc 228525921 Jan  8 00:54 ATLAS.root_0
[2026-01-08 07:08:19] -rw-r--r--. 2 boinc boinc    592400 Jan  8 00:54 input.tar.gz
[2026-01-08 07:08:19] -rw-r--r--. 2 boinc boinc     15847 Jan  8 00:54 start_atlas.sh
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc 219423015 Jan  8 07:03 HITS.pool.root.1
[2026-01-08 07:08:19] -rw-------. 1 boinc boinc   3502080 Jan  8 07:08 result.tar.gz
07:08:21 (11628): run_atlas exited; CPU time 80655.528641
07:08:21 (11628): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN