Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:17:10 (8806): wrapper (7.7.26015): starting
07:17:10 (8806): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 07:17:10] Arguments: --nthreads 8
[2026-01-08 07:17:10] Threads: 8
[2026-01-08 07:17:10] Checking for CVMFS
[2026-01-08 07:17:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 07:17:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 07:17:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 07:17:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 07:17:14] 2.11.2.0 24263 33604 122028 154894 3 60 14689484 25165825 899 130560 0 16606234 99.811 10778368 3332 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 07:17:14] CVMFS is ok
[2026-01-08 07:17:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:17:14] Checking for apptainer binary...
[2026-01-08 07:17:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 07:17:14] Running /usr/bin/apptainer --version
[2026-01-08 07:17:14] apptainer version 1.3.2-1.el7
[2026-01-08 07:17:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:17:19] cg-vwn484.simple-grid.lan
[2026-01-08 07:17:19] apptainer works
[2026-01-08 07:17:19] Set ATHENA_PROC_NUMBER=8
[2026-01-08 07:17:19] Set ATHENA_CORE_NUMBER=8
[2026-01-08 07:17:19] Starting ATLAS job with PandaID=6962320617
[2026-01-08 07:17:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:20:22]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:20:22] 2026-01-08 12:19:37,524 | INFO     | extracted standard info from prmon json
[2026-01-08 13:20:22] 2026-01-08 12:19:37,524 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 13:20:22] 2026-01-08 12:19:37,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 13:20:22] 2026-01-08 12:19:37,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 13:20:22] 2026-01-08 12:19:37,524 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 13:20:22] 2026-01-08 12:19:37,531 | INFO     | fitting pss+swap vs Time
[2026-01-08 13:20:22] 2026-01-08 12:19:37,532 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 13:20:22] 2026-01-08 12:19:37,535 | INFO     | sum of deviations: 131298632752.50009
[2026-01-08 13:20:22] 2026-01-08 12:19:37,535 | INFO     | mean x: 1767864247.5
[2026-01-08 13:20:22] 2026-01-08 12:19:37,535 | INFO     | mean y: 2444801.5116959065
[2026-01-08 13:20:22] 2026-01-08 12:19:37,536 | INFO     | intersect: -18711101133.094433
[2026-01-08 13:20:22] 2026-01-08 12:19:37,536 | INFO     | chi2: 8.833764967333032
[2026-01-08 13:20:22] 2026-01-08 12:19:37,537 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,546 | INFO     | sum of deviations: 175827883336.99994
[2026-01-08 13:20:22] 2026-01-08 12:19:37,547 | INFO     | mean x: 1767864095.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,547 | INFO     | mean y: 2457352.1068249256
[2026-01-08 13:20:22] 2026-01-08 12:19:37,547 | INFO     | intersect: -26189763312.214294
[2026-01-08 13:20:22] 2026-01-08 12:19:37,547 | INFO     | chi2: 7.293571877279739
[2026-01-08 13:20:22] 2026-01-08 12:19:37,547 | INFO     | current chi2=7.293571877279739 (change=17.435296227020707 %)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,548 | INFO     | right removable region: 336
[2026-01-08 13:20:22] 2026-01-08 12:19:37,548 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,551 | INFO     | sum of deviations: 11305416883.000008
[2026-01-08 13:20:22] 2026-01-08 12:19:37,552 | INFO     | mean x: 1767864400.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,552 | INFO     | mean y: 2478918.6320474776
[2026-01-08 13:20:22] 2026-01-08 12:19:37,552 | INFO     | intersect: -1681634085.3393927
[2026-01-08 13:20:22] 2026-01-08 12:19:37,552 | INFO     | chi2: 3.9958356594265814
[2026-01-08 13:20:22] 2026-01-08 12:19:37,553 | INFO     | current chi2=3.9958356594265814 (change=54.76633491831571 %)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,553 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,556 | INFO     | sum of deviations: -66144028221.50001
[2026-01-08 13:20:22] 2026-01-08 12:19:37,557 | INFO     | mean x: 1767864552.5
[2026-01-08 13:20:22] 2026-01-08 12:19:37,557 | INFO     | mean y: 2501554.743975904
[2026-01-08 13:20:22] 2026-01-08 12:19:37,557 | INFO     | intersect: 10307570295.939066
[2026-01-08 13:20:22] 2026-01-08 12:19:37,566 | INFO     | chi2: 1.8710130420620426
[2026-01-08 13:20:22] 2026-01-08 12:19:37,567 | INFO     | current chi2=1.8710130420620426 (change=53.1759261007611 %)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,567 | INFO     | sum of square deviations: 10842205148.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,571 | INFO     | sum of deviations: -74918615036.99977
[2026-01-08 13:20:22] 2026-01-08 12:19:37,571 | INFO     | mean x: 1767864705.0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,571 | INFO     | mean y: 2504190.8470948013
[2026-01-08 13:20:22] 2026-01-08 12:19:37,571 | INFO     | intersect: 12218282573.8844
[2026-01-08 13:20:22] 2026-01-08 12:19:37,572 | INFO     | chi2: 1.8250963096684658
[2026-01-08 13:20:22] 2026-01-08 12:19:37,572 | INFO     | current chi2=1.8250963096684658 (change=2.454110760391704 %)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,572 | INFO     | left removable region: 30
[2026-01-08 13:20:22] 2026-01-08 12:19:37,572 | INFO     | sum of square deviations: 8884603792.5
[2026-01-08 13:20:22] 2026-01-08 12:19:37,575 | INFO     | sum of deviations: 3286709035.999999
[2026-01-08 13:20:22] 2026-01-08 12:19:37,576 | INFO     | mean x: 1767864979.5
[2026-01-08 13:20:22] 2026-01-08 12:19:37,576 | INFO     | mean y: 2507440.274509804
[2026-01-08 13:20:22] 2026-01-08 12:19:37,576 | INFO     | intersect: -651484334.5140904
[2026-01-08 13:20:22] 2026-01-08 12:19:37,576 | INFO     | chi2: 0.05087857932506444
[2026-01-08 13:20:22] 2026-01-08 12:19:37,576 | INFO     | current memory leak: 0.37 B/s (using 306 data points, chi2=0.05)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,577 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,577 | INFO     | ..............................
[2026-01-08 13:20:22] 2026-01-08 12:19:37,577 | INFO     | . Timing measurements:
[2026-01-08 13:20:22] 2026-01-08 12:19:37,577 | INFO     | . get job = 0 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | . initial setup = 11 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | . payload setup = 162 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | . stage-in = 0 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | . payload execution = 20985 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | . stage-out = 3 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | . log creation = 1 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,578 | INFO     | ..............................
[2026-01-08 13:20:22] 2026-01-08 12:19:37,697 | INFO     | time since job start (21480s) is within the limit (174528.0s)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,744 | INFO     | 
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | job summary report
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | --------------------------------------------------
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | PanDA job id: 6962320617
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | task id: 47898826
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | errors: (none)
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | pilot state: finished 
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | transexitcode: 0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,745 | INFO     | exeerrorcode: 0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | exeerrordiag: 
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | exitcode: 0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | exitmsg: OK
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | cpuconsumptiontime: 78899 s
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | nevents: 400
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | neventsw: 0
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | pid: 19008
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | pgrp: 19008
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | corecount: 8
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | event service: False
[2026-01-08 13:20:22] 2026-01-08 12:19:37,746 | INFO     | sizes: {0: 2283141, 1: 2283998, 2: 2283998, 12: 2284026, 23: 2284054, 34: 2284082, 44: 2284238, 55: 2284266, 66: 2284294, 77: 2284322, 87: 2284378, 98: 2284686, 10
[2026-01-08 13:20:22] 2026-01-08 12:19:37,747 | INFO     | --------------------------------------------------
[2026-01-08 13:20:22] 2026-01-08 12:19:37,747 | INFO     | 
[2026-01-08 13:20:22] 2026-01-08 12:19:37,747 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-08 13:20:22] 2026-01-08 12:19:38,123 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,123 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,123 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,123 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | job 6962320617 has completed (purged errors)
[2026-01-08 13:20:22] 2026-01-08 12:19:38,125 | INFO     | overall cleanup function is called
[2026-01-08 13:20:22] 2026-01-08 12:19:38,796 | INFO     | PID=12523 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 13:20:22] 2026-01-08 12:19:38,796 | INFO     | .. there are 2 such processes running
[2026-01-08 13:20:22] 2026-01-08 12:19:39,133 | INFO     | --- collectZombieJob: --- 10, [19008]
[2026-01-08 13:20:22] 2026-01-08 12:19:39,134 | INFO     | zombie collector waiting for pid 19008
[2026-01-08 13:20:22] 2026-01-08 12:19:39,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 13:20:22] 2026-01-08 12:19:39,134 | INFO     | collected zombie processes
[2026-01-08 13:20:22] 2026-01-08 12:19:39,134 | INFO     | will attempt to kill all subprocesses of pid=19008
[2026-01-08 13:20:22] 2026-01-08 12:19:39,206 | INFO     | process IDs to be killed: [19008] (in reverse order)
[2026-01-08 13:20:22] 2026-01-08 12:19:39,930 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 13:20:22] 2026-01-08 12:19:39,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 13:20:22] 2026-01-08 12:19:39,932 | INFO     | did not find any defunct processes belonging to 19008
[2026-01-08 13:20:22] 2026-01-08 12:19:39,934 | INFO     | did not find any defunct processes belonging to 19008
[2026-01-08 13:20:22] 2026-01-08 12:19:39,934 | INFO     | ready for new job
[2026-01-08 13:20:22] 2026-01-08 12:19:39,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 13:20:22] 2026-01-08 12:19:39,936 | INFO     | ***************************************
[2026-01-08 13:20:22] 2026-01-08 12:19:39,937 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 13:20:22] 2026-01-08 12:19:39,937 | INFO     | ***************************************
[2026-01-08 13:20:22] 2026-01-08 12:19:39,937 | INFO     | 
[2026-01-08 13:20:22] 2026-01-08 12:19:39,937 | INFO     | pilot is running in a VM
[2026-01-08 13:20:22] 2026-01-08 12:19:39,937 | INFO     | architecture information:
[2026-01-08 13:20:22] 2026-01-08 12:19:39,939 | INFO     | executing command: cat /etc/os-release
[2026-01-08 13:20:22] 2026-01-08 12:19:40,133 | INFO     | cat /etc/os-release:
[2026-01-08 13:20:22] NAME="CentOS Linux"
[2026-01-08 13:20:22] VERSION="7 (Core)"
[2026-01-08 13:20:22] ID="centos"
[2026-01-08 13:20:22] ID_LIKE="rhel fedora"
[2026-01-08 13:20:22] VERSION_ID="7"
[2026-01-08 13:20:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:20:22] ANSI_COLOR="0;31"
[2026-01-08 13:20:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:20:22] HOME_URL="https://www.centos.org/"
[2026-01-08 13:20:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:20:22] 
[2026-01-08 13:20:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:20:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:20:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:20:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:20:22] 
[2026-01-08 13:20:22] 2026-01-08 12:19:40,133 | INFO     | ***************************************
[2026-01-08 13:20:22] 2026-01-08 12:19:40,637 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-08 13:20:22] 2026-01-08 12:19:40,802 | INFO     | sufficient remaining disk space (497098424320 B)
[2026-01-08 13:20:22] 2026-01-08 12:19:40,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:20:22] 2026-01-08 12:19:40,803 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:20:22] 2026-01-08 12:19:40,803 | INFO     | update_server=False
[2026-01-08 13:20:22] 2026-01-08 12:19:40,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:20:22] 2026-01-08 12:19:40,874 | INFO     | all payload control threads have been joined
[2026-01-08 13:20:22] 2026-01-08 12:19:41,051 | INFO     | all data control threads have been joined
[2026-01-08 13:20:22] 2026-01-08 12:19:41,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:20:22] 2026-01-08 12:19:41,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:20:22] 2026-01-08 12:19:41,768 | INFO     | aborting loop
[2026-01-08 13:20:22] 2026-01-08 12:19:41,809 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:41,881 | INFO     | [payload] control thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:41,914 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:41,961 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:42,057 | INFO     | [data] control thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:42,226 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:42,280 | INFO     | all job control threads have been joined
[2026-01-08 13:20:22] 2026-01-08 12:19:42,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:20:22] 2026-01-08 12:19:42,604 | INFO     | [job] validate thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:42,608 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:42,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:20:22] 2026-01-08 12:19:42,773 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:43,101 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:43,107 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:43,286 | INFO     | [job] control thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:43,297 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:43,761 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:46,428 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:19:51,286 | INFO     | job.realtimelogging is not enabled
[2026-01-08 13:20:22] 2026-01-08 12:19:52,292 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:20:22] 2026-01-08 12:20:10,910 | INFO     | PID=12523 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 13:20:22] 2026-01-08 12:20:10,911 | INFO     | .. there are 2 such processes running
[2026-01-08 13:20:22] 2026-01-08 12:20:10,911 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:20:22] 2026-01-08 12:20:10,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:20:22] 2026-01-08 12:20:10,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:20:22] 2026-01-08 12:20:14,027 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:20:22] 2026-01-08 12:20:15,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139941479745344)>', '<ExcThread(monitor, started 139940763526912)>']
[2026-01-08 13:20:22] 2026-01-08 12:20:15,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:20:22] 2026-01-08 12:20:15,941 | INFO     | [monitor] control thread has ended
[2026-01-08 13:20:22] 2026-01-08 12:20:20,028 | INFO     | all workflow threads have been joined
[2026-01-08 13:20:22] 2026-01-08 12:20:20,029 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:20:22] 2026-01-08 12:20:20,029 | INFO     | traces error code: 0
[2026-01-08 13:20:22] 2026-01-08 12:20:20,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:20:22] 2026-01-08 12:20:20,421 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:20:22] 2026-01-08 12:20:20,510 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:20:22] 2026-01-08 12:20:20,598 [wrapper] pilotpid: 12523
[2026-01-08 13:20:22] 2026-01-08 12:20:20,673 [wrapper] Pilot exit status: 0
[2026-01-08 13:20:22] 2026-01-08 12:20:20,739 [wrapper] pandaids: 6962320617
[2026-01-08 13:20:22] 2026-01-08 12:20:20,772 [wrapper] cleanup supervisor_pilot 18109 12524
[2026-01-08 13:20:22] 2026-01-08 12:20:20,860 [wrapper] Test setup, not cleaning
[2026-01-08 13:20:22] 2026-01-08 12:20:20,977 [wrapper] apfmon messages muted
[2026-01-08 13:20:22] 2026-01-08 12:20:21,086 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:20:22] 2026-01-08 12:20:21,154 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:20:22]  *** Error codes and diagnostics ***
[2026-01-08 13:20:22]     "exeErrorCode": 0,
[2026-01-08 13:20:22]     "exeErrorDiag": "",
[2026-01-08 13:20:22]     "pilotErrorCode": 0,
[2026-01-08 13:20:22]     "pilotErrorDiag": "",
[2026-01-08 13:20:22]  *** Listing of results directory ***
[2026-01-08 13:20:22] total 447364
[2026-01-08 13:20:22] -rwx------. 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc       100 Jan  8 07:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:20:22] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 07:17 run_atlas
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc       105 Jan  8 07:17 job.xml
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc      6392 Jan  8 07:17 init_data.xml
[2026-01-08 13:20:22] -rw-r--r--. 2 boinc boinc 223727161 Jan  8 07:17 EVNT.47898824._000676.pool.root.1
[2026-01-08 13:20:22] -rw-r--r--. 2 boinc boinc     15847 Jan  8 07:17 start_atlas.sh
[2026-01-08 13:20:22] drwxrwx--x. 2 boinc boinc        68 Jan  8 07:17 shared
[2026-01-08 13:20:22] -rw-r--r--. 2 boinc boinc    592398 Jan  8 07:17 input.tar.gz
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc         0 Jan  8 07:17 boinc_lockfile
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc      2519 Jan  8 07:17 pandaJob.out
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc    989827 Jan  8 07:21 agis_schedconf.cvmfs.json
[2026-01-08 13:20:22] drwx------. 5 boinc boinc      4096 Jan  8 07:21 pilot3
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc 223654770 Jan  8 13:16 HITS.47898826._014430.pool.root.1
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc       531 Jan  8 13:16 boinc_task_state.xml
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc      1016 Jan  8 13:17 memory_monitor_summary.json
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc   1516240 Jan  8 13:17 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc    552026 Jan  8 13:17 log.47898826._014430.job.log.tgz.1
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc      7781 Jan  8 13:19 heartbeat.json
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc        95 Jan  8 13:19 pilot_heartbeat.json
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc      4957 Jan  8 13:20 pilotlog.txt
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc   2855003 Jan  8 13:20 log.47898826._014430.job.log.1
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc       357 Jan  8 13:20 output.list
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc       620 Jan  8 13:20 runtime_log
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc   3430400 Jan  8 13:20 result.tar.gz
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc      8192 Jan  8 13:20 boinc_mmap_file
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc        28 Jan  8 13:20 wrapper_checkpoint.txt
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc      8833 Jan  8 13:20 runtime_log.err
[2026-01-08 13:20:22] -rw-------. 1 boinc boinc       657 Jan  8 13:20 2X2MDmtopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7qdKDm8qxLkm.diag
[2026-01-08 13:20:22] -rw-r--r--. 1 boinc boinc     20823 Jan  8 13:20 stderr.txt
[2026-01-08 13:20:23] HITS file was successfully produced:
[2026-01-08 13:20:23] -rw-------. 1 boinc boinc 223654770 Jan  8 13:16 shared/HITS.pool.root.1
[2026-01-08 13:20:23]  *** Contents of shared directory: ***
[2026-01-08 13:20:23] total 440848
[2026-01-08 13:20:23] -rw-r--r--. 2 boinc boinc 223727161 Jan  8 07:17 ATLAS.root_0
[2026-01-08 13:20:23] -rw-r--r--. 2 boinc boinc     15847 Jan  8 07:17 start_atlas.sh
[2026-01-08 13:20:23] -rw-r--r--. 2 boinc boinc    592398 Jan  8 07:17 input.tar.gz
[2026-01-08 13:20:23] -rw-------. 1 boinc boinc 223654770 Jan  8 13:16 HITS.pool.root.1
[2026-01-08 13:20:23] -rw-------. 1 boinc boinc   3430400 Jan  8 13:20 result.tar.gz
13:20:24 (8806): run_atlas exited; CPU time 79085.277462
13:20:24 (8806): called boinc_finish(0)

</stderr_txt>
]]>

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