Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:56:44 (2894917): wrapper (7.7.26015): starting
18:56:44 (2894917): wrapper: running run_atlas (--nthreads 10)
[2026-01-07 18:56:44] Arguments: --nthreads 10
[2026-01-07 18:56:44] Threads: 10
[2026-01-07 18:56:44] Checking for CVMFS
[2026-01-07 18:56:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 18:56:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 18:56:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 18:56:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 18:56:46] 2.13.3.0 14106 91169 133752 154884 2 622 23786699 40960000 32741 16776704 0 1041992705 99.712 800686328 48437 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 18:56:46] CVMFS is ok
[2026-01-07 18:56:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 18:56:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 18:56:46] Further information can be found at the LHC@home message board.
[2026-01-07 18:56:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 18:56:46] Checking for apptainer binary...
[2026-01-07 18:56:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 18:56:46] Running /usr/bin/apptainer --version
[2026-01-07 18:56:46] apptainer version 1.4.5-2.el9
[2026-01-07 18:56:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 18:56:47] c8-7-5.aglt2.org
[2026-01-07 18:56:47] apptainer works
[2026-01-07 18:56:47] Set ATHENA_PROC_NUMBER=10
[2026-01-07 18:56:47] Set ATHENA_CORE_NUMBER=10
[2026-01-07 18:56:47] Starting ATLAS job with PandaID=6962314187
[2026-01-07 18:56:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:40:10 (2894917): BOINC client no longer exists - exiting
19:40:10 (2894917): timer handler: client dead, exiting
19:40:58 (3257915): wrapper (7.7.26015): starting
19:40:58 (3257915): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 19:40:58] Arguments: --nthreads 8
[2026-01-07 19:40:58] Threads: 8
[2026-01-07 19:40:58] This job has been restarted, cleaning up previous attempt
[2026-01-07 19:40:58] Checking for CVMFS
[2026-01-07 19:40:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 19:40:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 19:40:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 19:40:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 19:40:59] 2.13.3.0 14106 91213 124052 154885 2 540 25452831 40960001 25576 16776704 0 1042420115 99.712 801904717 48481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 19:40:59] CVMFS is ok
[2026-01-07 19:40:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 19:40:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 19:40:59] Further information can be found at the LHC@home message board.
[2026-01-07 19:40:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 19:40:59] Checking for apptainer binary...
[2026-01-07 19:40:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 19:40:59] Running /usr/bin/apptainer --version
[2026-01-07 19:40:59] apptainer version 1.4.5-2.el9
[2026-01-07 19:40:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 19:40:59] c8-7-5.aglt2.org
[2026-01-07 19:40:59] apptainer works
[2026-01-07 19:40:59] Set ATHENA_PROC_NUMBER=8
[2026-01-07 19:40:59] Set ATHENA_CORE_NUMBER=8
[2026-01-07 19:40:59] Starting ATLAS job with PandaID=6962314187
[2026-01-07 19:40:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 00:37:05]  *** The last 200 lines of the pilot log: ***
[2026-01-08 00:37:05] 2026-01-08 05:35:52,296 | INFO     | .. there are 26 such processes running
[2026-01-08 00:37:05] 2026-01-08 05:35:53,297 | INFO     | time since job start (17681s) is within the limit (174528.0s)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,764 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-08 00:37:05] 2026-01-08 05:35:53,772 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9959296875
[2026-01-08 00:37:05] 2026-01-08 05:35:53,822 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962314187/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,825 | INFO     | extracted standard info from prmon json
[2026-01-08 00:37:05] 2026-01-08 05:35:53,825 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 00:37:05] 2026-01-08 05:35:53,825 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 00:37:05] 2026-01-08 05:35:53,826 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 00:37:05] 2026-01-08 05:35:53,826 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 00:37:05] 2026-01-08 05:35:53,829 | INFO     | fitting pss+swap vs Time
[2026-01-08 00:37:05] 2026-01-08 05:35:53,831 | INFO     | sum of square deviations: 7484522743.944653
[2026-01-08 00:37:05] 2026-01-08 05:35:53,832 | INFO     | sum of deviations: 42555265326.031105
[2026-01-08 00:37:05] 2026-01-08 05:35:53,832 | INFO     | mean x: 1767841685.013841
[2026-01-08 00:37:05] 2026-01-08 05:35:53,832 | INFO     | mean y: 2489175.242214533
[2026-01-08 00:37:05] 2026-01-08 05:35:53,832 | INFO     | intersect: -10049049785.080603
[2026-01-08 00:37:05] 2026-01-08 05:35:53,833 | INFO     | chi2: 1.154054807073553
[2026-01-08 00:37:05] 2026-01-08 05:35:53,833 | INFO     | sum of square deviations: 7102730758.943705
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | sum of deviations: 41457183144.32395
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | mean x: 1767841532.5140846
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | mean y: 2488736.6690140846
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | intersect: -10316039822.405659
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | chi2: 1.154327000620005
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | current chi2=1.154327000620005 (change=-0.02358584226534731 %)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,834 | INFO     | right removable region: 283
[2026-01-08 00:37:05] 2026-01-08 05:35:53,854 | INFO     | sum of square deviations: 7102728318.943705
[2026-01-08 00:37:05] 2026-01-08 05:35:53,855 | INFO     | sum of deviations: 6617077387.40845
[2026-01-08 00:37:05] 2026-01-08 05:35:53,855 | INFO     | mean x: 1767841837.5140846
[2026-01-08 00:37:05] 2026-01-08 05:35:53,855 | INFO     | mean y: 2503402.647887324
[2026-01-08 00:37:05] 2026-01-08 05:35:53,855 | INFO     | intersect: -1644461780.622523
[2026-01-08 00:37:05] 2026-01-08 05:35:53,856 | INFO     | chi2: 0.0019756058321895335
[2026-01-08 00:37:05] 2026-01-08 05:35:53,856 | INFO     | current chi2=0.0019756058321895335 (change=99.82881178432078 %)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,856 | INFO     | sum of square deviations: 6734143443.9426565
[2026-01-08 00:37:05] 2026-01-08 05:35:53,857 | INFO     | sum of deviations: 5216769020.655914
[2026-01-08 00:37:05] 2026-01-08 05:35:53,857 | INFO     | mean x: 1767841990.0143368
[2026-01-08 00:37:05] 2026-01-08 05:35:53,857 | INFO     | mean y: 2503980.0860215053
[2026-01-08 00:37:05] 2026-01-08 05:35:53,857 | INFO     | intersect: -1366998081.117774
[2026-01-08 00:37:05] 2026-01-08 05:35:53,865 | INFO     | chi2: 0.0013592768900098533
[2026-01-08 00:37:05] 2026-01-08 05:35:53,865 | INFO     | current chi2=0.0013592768900098533 (change=31.196959035933414 %)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,865 | INFO     | sum of square deviations: 6378535556.441567
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | sum of deviations: 5368599780.624084
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | mean x: 1767842142.5145986
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | mean y: 2503913.7189781023
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | intersect: -1485429618.1239638
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | chi2: 0.0012270912803924326
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | current chi2=0.0012270912803924326 (change=9.72470072793355 %)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,866 | INFO     | left removable region: 30
[2026-01-08 00:37:05] 2026-01-08 05:35:53,867 | INFO     | sum of square deviations: 5021496088.996067
[2026-01-08 00:37:05] 2026-01-08 05:35:53,868 | INFO     | sum of deviations: 5727125097.55336
[2026-01-08 00:37:05] 2026-01-08 05:35:53,868 | INFO     | mean x: 1767842417.0039525
[2026-01-08 00:37:05] 2026-01-08 05:35:53,868 | INFO     | mean y: 2503281.4466403164
[2026-01-08 00:37:05] 2026-01-08 05:35:53,868 | INFO     | intersect: -2013759301.5571675
[2026-01-08 00:37:05] 2026-01-08 05:35:53,868 | INFO     | chi2: 0.0006387894166254975
[2026-01-08 00:37:05] 2026-01-08 05:35:53,868 | INFO     | current memory leak: 1.14 B/s (using 253 data points, chi2=0.00)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | could have reported an average CPU frequency of 3771 MHz (13 samples)
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | ..............................
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . Timing measurements:
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . get job = 0 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . initial setup = 1 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . payload setup = 6 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . stage-in = 0 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . payload execution = 17622 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . stage-out = 3 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | . log creation = 0 s
[2026-01-08 00:37:05] 2026-01-08 05:35:53,885 | INFO     | ..............................
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | 
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | job summary report
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | --------------------------------------------------
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | PanDA job id: 6962314187
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | task id: 47898826
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | errors: (none)
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | pilot state: finished 
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | transexitcode: 0
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | exeerrorcode: 0
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | exeerrordiag: 
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | exitcode: 0
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | exitmsg: OK
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | cpuconsumptiontime: 32088 s
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | nevents: 400
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | neventsw: 0
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | pid: 3340310
[2026-01-08 00:37:05] 2026-01-08 05:35:54,309 | INFO     | pgrp: 3340310
[2026-01-08 00:37:05] 2026-01-08 05:35:54,310 | INFO     | corecount: 8
[2026-01-08 00:37:05] 2026-01-08 05:35:54,310 | INFO     | event service: False
[2026-01-08 00:37:05] 2026-01-08 05:35:54,310 | INFO     | sizes: {0: 2283964, 5: 2284226, 11: 2284282, 17633: 2316599, 17637: 2325597, 17639: 2325653, 17665: 2325975}
[2026-01-08 00:37:05] 2026-01-08 05:35:54,310 | INFO     | --------------------------------------------------
[2026-01-08 00:37:05] 2026-01-08 05:35:54,310 | INFO     | 
[2026-01-08 00:37:05] 2026-01-08 05:35:54,310 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,598 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 00:37:05] 2026-01-08 05:35:54,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,598 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 00:37:05] 2026-01-08 05:35:54,598 | INFO     | job 6962314187 has completed (purged errors)
[2026-01-08 00:37:05] 2026-01-08 05:35:54,598 | INFO     | overall cleanup function is called
[2026-01-08 00:37:05] 2026-01-08 05:35:55,631 | INFO     | --- collectZombieJob: --- 10, [3340310]
[2026-01-08 00:37:05] 2026-01-08 05:35:55,631 | INFO     | zombie collector waiting for pid 3340310
[2026-01-08 00:37:05] 2026-01-08 05:35:55,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 00:37:05] 2026-01-08 05:35:55,631 | INFO     | collected zombie processes
[2026-01-08 00:37:05] 2026-01-08 05:35:55,631 | INFO     | will attempt to kill all subprocesses of pid=3340310
[2026-01-08 00:37:05] 2026-01-08 05:35:56,237 | INFO     | process IDs to be killed: [3340310] (in reverse order)
[2026-01-08 00:37:05] 2026-01-08 05:35:56,553 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 00:37:05] 2026-01-08 05:35:56,553 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 00:37:05] 2026-01-08 05:35:56,584 | INFO     | did not find any defunct processes belonging to 3340310
[2026-01-08 00:37:05] 2026-01-08 05:35:56,606 | INFO     | did not find any defunct processes belonging to 3340310
[2026-01-08 00:37:05] 2026-01-08 05:35:56,606 | INFO     | ready for new job
[2026-01-08 00:37:05] 2026-01-08 05:35:56,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 00:37:05] 2026-01-08 05:35:56,608 | INFO     | ***************************************
[2026-01-08 00:37:05] 2026-01-08 05:35:56,608 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 00:37:05] 2026-01-08 05:35:56,608 | INFO     | ***************************************
[2026-01-08 00:37:05] 2026-01-08 05:35:56,608 | INFO     | 
[2026-01-08 00:37:05] 2026-01-08 05:35:56,613 | INFO     | architecture information:
[2026-01-08 00:37:05] 2026-01-08 05:35:56,613 | INFO     | executing command: cat /etc/os-release
[2026-01-08 00:37:05] 2026-01-08 05:35:56,739 | INFO     | cat /etc/os-release:
[2026-01-08 00:37:05] NAME="CentOS Linux"
[2026-01-08 00:37:05] VERSION="7 (Core)"
[2026-01-08 00:37:05] ID="centos"
[2026-01-08 00:37:05] ID_LIKE="rhel fedora"
[2026-01-08 00:37:05] VERSION_ID="7"
[2026-01-08 00:37:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 00:37:05] ANSI_COLOR="0;31"
[2026-01-08 00:37:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 00:37:05] HOME_URL="https://www.centos.org/"
[2026-01-08 00:37:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 00:37:05] 
[2026-01-08 00:37:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 00:37:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 00:37:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 00:37:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 00:37:05] 
[2026-01-08 00:37:05] 2026-01-08 05:35:56,739 | INFO     | ***************************************
[2026-01-08 00:37:05] 2026-01-08 05:35:57,250 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 00:37:05] 2026-01-08 05:35:57,368 | INFO     | sufficient remaining disk space (170410377216 B)
[2026-01-08 00:37:05] 2026-01-08 05:35:57,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 00:37:05] 2026-01-08 05:35:57,368 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 00:37:05] 2026-01-08 05:35:57,368 | INFO     | update_server=False
[2026-01-08 00:37:05] 2026-01-08 05:35:57,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 00:37:05] 2026-01-08 05:35:57,722 | INFO     | all data control threads have been joined
[2026-01-08 00:37:05] 2026-01-08 05:35:57,888 | INFO     | all job control threads have been joined
[2026-01-08 00:37:05] 2026-01-08 05:35:57,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 00:37:05] 2026-01-08 05:35:57,892 | INFO     | aborting loop
[2026-01-08 00:37:05] 2026-01-08 05:35:58,374 | INFO     | [job] retrieve thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:58,598 | INFO     | [payload] failed_post thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:58,728 | INFO     | [data] control thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:58,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 00:37:05] 2026-01-08 05:35:58,825 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:58,859 | INFO     | all payload control threads have been joined
[2026-01-08 00:37:05] 2026-01-08 05:35:58,894 | INFO     | [job] control thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:58,898 | INFO     | [job] job monitor thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:58,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 00:37:05] 2026-01-08 05:35:59,329 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,570 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,577 | INFO     | [data] copytool_in thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,826 | INFO     | [job] validate thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,827 | INFO     | [payload] validate_post thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,831 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,865 | INFO     | [payload] control thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:35:59,986 | INFO     | [job] queue monitor thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:36:00,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 00:37:05] 2026-01-08 05:36:00,795 | INFO     | [data] copytool_out thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:36:04,622 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 00:37:05] 2026-01-08 05:36:27,282 | INFO     | PID=3287773 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 00:37:05] 2026-01-08 05:36:27,282 | INFO     | .. there are 25 such processes running
[2026-01-08 00:37:05] 2026-01-08 05:36:27,282 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 00:37:05] 2026-01-08 05:36:27,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 00:37:05] 2026-01-08 05:36:27,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 00:37:05] 2026-01-08 05:36:42,813 | INFO     | [monitor] cgroup control has ended
[2026-01-08 00:37:05] 2026-01-08 05:36:44,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139833223444288)>', '<ExcThread(monitor, started 139832365926144)>']
[2026-01-08 00:37:05] 2026-01-08 05:36:44,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 00:37:05] 2026-01-08 05:36:44,381 | INFO     | [monitor] control thread has ended
[2026-01-08 00:37:05] 2026-01-08 05:36:49,121 | INFO     | all workflow threads have been joined
[2026-01-08 00:37:05] 2026-01-08 05:36:49,121 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 00:37:05] 2026-01-08 05:36:49,121 | INFO     | traces error code: 0
[2026-01-08 00:37:05] 2026-01-08 05:36:49,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 00:37:05] 2026-01-08 05:36:49,289 [wrapper] ==== pilot stdout END ====
[2026-01-08 00:37:05] 2026-01-08 05:36:49,295 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 00:37:05] 2026-01-08 05:36:49,297 [wrapper] pilotpid: 3287773
[2026-01-08 00:37:05] 2026-01-08 05:36:49,299 [wrapper] Pilot exit status: 0
[2026-01-08 00:37:05] 2026-01-08 05:36:49,361 [wrapper] pandaids: 6962314187 6962314187
[2026-01-08 00:37:05] 2026-01-08 05:36:49,658 [wrapper] cleanup supervisor_pilot 1163515 3287775
[2026-01-08 00:37:05] 2026-01-08 05:36:49,695 [wrapper] Test setup, not cleaning
[2026-01-08 00:37:05] 2026-01-08 05:36:49,719 [wrapper] apfmon messages muted
[2026-01-08 00:37:05] 2026-01-08 05:36:49,779 [wrapper] ==== wrapper stdout END ====
[2026-01-08 00:37:05] 2026-01-08 05:36:49,798 [wrapper] ==== wrapper stderr END ====
[2026-01-08 00:37:05]  *** Error codes and diagnostics ***
[2026-01-08 00:37:05]     "exeErrorCode": 0,
[2026-01-08 00:37:05]     "exeErrorDiag": "",
[2026-01-08 00:37:05]     "pilotErrorCode": 0,
[2026-01-08 00:37:05]     "pilotErrorDiag": "",
[2026-01-08 00:37:05]  *** Listing of results directory ***
[2026-01-08 00:37:05] total 660976
[2026-01-08 00:37:05] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 15:49 pilot3.tar.gz
[2026-01-08 00:37:05] -rwx------. 1 boincer umatlas     36322 Jan  7 15:53 runpilot2-wrapper.sh
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 15:53 queuedata.json
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas       100 Jan  7 18:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 00:37:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 18:56 run_atlas
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas       105 Jan  7 18:56 job.xml
[2026-01-08 00:37:05] -rw-r--r--. 3 boincer umatlas 226724761 Jan  7 18:56 EVNT.47898824._000269.pool.root.1
[2026-01-08 00:37:05] -rw-r--r--. 3 boincer umatlas 226724761 Jan  7 18:56 ATLAS.root_0
[2026-01-08 00:37:05] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 18:56 start_atlas.sh
[2026-01-08 00:37:05] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 18:56 shared
[2026-01-08 00:37:05] -rw-r--r--. 2 boincer umatlas    592399 Jan  7 18:56 input.tar.gz
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas         0 Jan  7 18:56 boinc_lockfile
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas      2516 Jan  7 19:40 pandaJob.out
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas        57 Jan  7 19:41 setup.sh.local
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas    989777 Jan  7 19:41 agis_schedconf.cvmfs.json
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas      7170 Jan  8 00:29 init_data.xml
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas 213794344 Jan  8 00:34 HITS.47898826._011025.pool.root.1
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas       531 Jan  8 00:34 boinc_task_state.xml
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas      1057 Jan  8 00:35 memory_monitor_summary.json
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas   1516240 Jan  8 00:35 agis_ddmendpoints.agis.ALL.json
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas    498389 Jan  8 00:35 log.47898826._011025.job.log.tgz.1
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas        95 Jan  8 00:35 pilot_heartbeat.json
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas      7809 Jan  8 00:35 heartbeat.json
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas      4825 Jan  8 00:36 pilotlog.txt
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas   2335270 Jan  8 00:36 log.47898826._011025.job.log.1
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas       357 Jan  8 00:36 output.list
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas       620 Jan  8 00:36 runtime_log
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas   2856960 Jan  8 00:36 result.tar.gz
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas       783 Jan  8 00:36 VSXNDmQipx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1QdKDm49sRrn.diag
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas      9418 Jan  8 00:36 runtime_log.err
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 00:37 boinc_mmap_file
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas     23454 Jan  8 00:37 stderr.txt
[2026-01-08 00:37:05] -rw-r--r--. 1 boincer umatlas        28 Jan  8 00:37 wrapper_checkpoint.txt
[2026-01-08 00:37:05] HITS file was successfully produced:
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas 213794344 Jan  8 00:34 shared/HITS.pool.root.1
[2026-01-08 00:37:05]  *** Contents of shared directory: ***
[2026-01-08 00:37:05] total 433592
[2026-01-08 00:37:05] -rw-r--r--. 3 boincer umatlas 226724761 Jan  7 18:56 ATLAS.root_0
[2026-01-08 00:37:05] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 18:56 start_atlas.sh
[2026-01-08 00:37:05] -rw-r--r--. 2 boincer umatlas    592399 Jan  7 18:56 input.tar.gz
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas 213794344 Jan  8 00:34 HITS.pool.root.1
[2026-01-08 00:37:05] -rw-------. 1 boincer umatlas   2856960 Jan  8 00:36 result.tar.gz
00:37:07 (3257915): run_atlas exited; CPU time 32638.727369
00:37:07 (3257915): called boinc_finish(0)

</stderr_txt>
]]>

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