Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:47:37 (4856): wrapper (7.7.26015): starting
00:47:37 (4856): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 00:47:37] Arguments: --nthreads 8
[2026-01-08 00:47:37] Threads: 8
[2026-01-08 00:47:37] Checking for CVMFS
[2026-01-08 00:47:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 00:47:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 00:47:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 00:47:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 00:47:39] 2.11.2.0 2053 33205 103064 154884 0 53 23974255 25165824 1034 130560 0 6299616 99.629 9301650 4301 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 00:47:39] CVMFS is ok
[2026-01-08 00:47:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 00:47:39] Checking for apptainer binary...
[2026-01-08 00:47:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 00:47:39] Running /usr/bin/apptainer --version
[2026-01-08 00:47:39] apptainer version 1.3.2-1.el7
[2026-01-08 00:47:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 00:48:02] cg-vwn436.simple-grid.lan
[2026-01-08 00:48:02] apptainer works
[2026-01-08 00:48:02] Set ATHENA_PROC_NUMBER=8
[2026-01-08 00:48:02] Set ATHENA_CORE_NUMBER=8
[2026-01-08 00:48:02] Starting ATLAS job with PandaID=6962320390
[2026-01-08 00:48:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 06:37:44]  *** The last 200 lines of the pilot log: ***
[2026-01-08 06:37:44] 2026-01-08 05:36:41,163 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 06:37:44] 2026-01-08 05:36:41,164 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 06:37:44] 2026-01-08 05:36:41,166 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6962320390/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,167 | INFO     | extracted standard info from prmon json
[2026-01-08 06:37:44] 2026-01-08 05:36:41,167 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 06:37:44] 2026-01-08 05:36:41,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 06:37:44] 2026-01-08 05:36:41,168 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 06:37:44] 2026-01-08 05:36:41,168 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 06:37:44] 2026-01-08 05:36:41,175 | INFO     | fitting pss+swap vs Time
[2026-01-08 06:37:44] 2026-01-08 05:36:41,176 | INFO     | sum of square deviations: 11042365180.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,179 | INFO     | sum of deviations: 120991659446.99998
[2026-01-08 06:37:44] 2026-01-08 05:36:41,180 | INFO     | mean x: 1767840466.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,180 | INFO     | mean y: 2447678.288753799
[2026-01-08 06:37:44] 2026-01-08 05:36:41,180 | INFO     | intersect: -19367854619.474754
[2026-01-08 06:37:44] 2026-01-08 05:36:41,181 | INFO     | chi2: 6.8579052846513555
[2026-01-08 06:37:44] 2026-01-08 05:36:41,181 | INFO     | sum of square deviations: 10546523325.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,185 | INFO     | sum of deviations: 163649613428.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,185 | INFO     | mean x: 1767840313.5
[2026-01-08 06:37:44] 2026-01-08 05:36:41,185 | INFO     | mean y: 2460672.1481481483
[2026-01-08 06:37:44] 2026-01-08 05:36:41,185 | INFO     | intersect: -27428985216.84194
[2026-01-08 06:37:44] 2026-01-08 05:36:41,186 | INFO     | chi2: 5.2796895524077625
[2026-01-08 06:37:44] 2026-01-08 05:36:41,186 | INFO     | current chi2=5.2796895524077625 (change=23.013087331138706 %)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,186 | INFO     | right removable region: 323
[2026-01-08 06:37:44] 2026-01-08 05:36:41,187 | INFO     | sum of square deviations: 10546523325.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,190 | INFO     | sum of deviations: 8152169167.499985
[2026-01-08 06:37:44] 2026-01-08 05:36:41,190 | INFO     | mean x: 1767840618.5
[2026-01-08 06:37:44] 2026-01-08 05:36:41,190 | INFO     | mean y: 2482361.546296296
[2026-01-08 06:37:44] 2026-01-08 05:36:41,191 | INFO     | intersect: -1364009262.193587
[2026-01-08 06:37:44] 2026-01-08 05:36:41,191 | INFO     | chi2: 2.4078914724394016
[2026-01-08 06:37:44] 2026-01-08 05:36:41,191 | INFO     | current chi2=2.4078914724394016 (change=64.88881994581506 %)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,192 | INFO     | sum of square deviations: 10065751520.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,195 | INFO     | sum of deviations: -27552965011.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,196 | INFO     | mean x: 1767840771.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,196 | INFO     | mean y: 2493608.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,196 | INFO     | intersect: 4841601230.674782
[2026-01-08 06:37:44] 2026-01-08 05:36:41,196 | INFO     | chi2: 1.6943565680501518
[2026-01-08 06:37:44] 2026-01-08 05:36:41,197 | INFO     | current chi2=1.6943565680501518 (change=29.633183744214914 %)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,197 | INFO     | sum of square deviations: 9599817202.5
[2026-01-08 06:37:44] 2026-01-08 05:36:41,201 | INFO     | sum of deviations: -26757901076.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,201 | INFO     | mean x: 1767840923.5
[2026-01-08 06:37:44] 2026-01-08 05:36:41,201 | INFO     | mean y: 2493332.9108280255
[2026-01-08 06:37:44] 2026-01-08 05:36:41,201 | INFO     | intersect: 4930057217.856321
[2026-01-08 06:37:44] 2026-01-08 05:36:41,202 | INFO     | chi2: 1.683888109516265
[2026-01-08 06:37:44] 2026-01-08 05:36:41,202 | INFO     | current chi2=1.683888109516265 (change=0.6178427098101185 %)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,202 | INFO     | left removable region: 30
[2026-01-08 06:37:44] 2026-01-08 05:36:41,202 | INFO     | sum of square deviations: 7799669962.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,205 | INFO     | sum of deviations: 11546194557.999998
[2026-01-08 06:37:44] 2026-01-08 05:36:41,206 | INFO     | mean x: 1767841198.0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,206 | INFO     | mean y: 2509344.1160409558
[2026-01-08 06:37:44] 2026-01-08 05:36:41,206 | INFO     | intersect: -2614503749.925411
[2026-01-08 06:37:44] 2026-01-08 05:36:41,206 | INFO     | chi2: 0.0022362659028370316
[2026-01-08 06:37:44] 2026-01-08 05:36:41,207 | INFO     | current memory leak: 1.48 B/s (using 293 data points, chi2=0.00)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,207 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | ..............................
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . Timing measurements:
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . get job = 0 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . initial setup = 11 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . payload setup = 139 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . stage-in = 0 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . payload execution = 20194 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,208 | INFO     | . stage-out = 3 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,209 | INFO     | . log creation = 1 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,209 | INFO     | ..............................
[2026-01-08 06:37:44] 2026-01-08 05:36:41,334 | INFO     | 
[2026-01-08 06:37:44] 2026-01-08 05:36:41,334 | INFO     | job summary report
[2026-01-08 06:37:44] 2026-01-08 05:36:41,334 | INFO     | --------------------------------------------------
[2026-01-08 06:37:44] 2026-01-08 05:36:41,334 | INFO     | PanDA job id: 6962320390
[2026-01-08 06:37:44] 2026-01-08 05:36:41,334 | INFO     | task id: 47898826
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | errors: (none)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | pilot state: finished 
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | transexitcode: 0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | exeerrorcode: 0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | exeerrordiag: 
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | exitcode: 0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | exitmsg: OK
[2026-01-08 06:37:44] 2026-01-08 05:36:41,335 | INFO     | cpuconsumptiontime: 81429 s
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | nevents: 400
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | neventsw: 0
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | pid: 15439
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | pgrp: 15439
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | corecount: 8
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | event service: False
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2284025, 13: 2284025, 23: 2284081, 34: 2284109, 45: 2284265, 56: 2284293, 66: 2284321, 77: 2284349, 88: 2284405, 99: 2284713, 10
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | --------------------------------------------------
[2026-01-08 06:37:44] 2026-01-08 05:36:41,336 | INFO     | 
[2026-01-08 06:37:44] 2026-01-08 05:36:41,337 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-08 06:37:44] 2026-01-08 05:36:41,814 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,817 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,817 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 06:37:44] 2026-01-08 05:36:41,817 | INFO     | job 6962320390 has completed (purged errors)
[2026-01-08 06:37:44] 2026-01-08 05:36:41,817 | INFO     | overall cleanup function is called
[2026-01-08 06:37:44] 2026-01-08 05:36:42,827 | INFO     | --- collectZombieJob: --- 10, [15439]
[2026-01-08 06:37:44] 2026-01-08 05:36:42,827 | INFO     | zombie collector waiting for pid 15439
[2026-01-08 06:37:44] 2026-01-08 05:36:42,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 06:37:44] 2026-01-08 05:36:42,827 | INFO     | collected zombie processes
[2026-01-08 06:37:44] 2026-01-08 05:36:42,828 | INFO     | will attempt to kill all subprocesses of pid=15439
[2026-01-08 06:37:44] 2026-01-08 05:36:42,930 | INFO     | process IDs to be killed: [15439] (in reverse order)
[2026-01-08 06:37:44] 2026-01-08 05:36:43,880 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 06:37:44] 2026-01-08 05:36:43,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 06:37:44] 2026-01-08 05:36:43,888 | INFO     | did not find any defunct processes belonging to 15439
[2026-01-08 06:37:44] 2026-01-08 05:36:43,890 | INFO     | did not find any defunct processes belonging to 15439
[2026-01-08 06:37:44] 2026-01-08 05:36:43,891 | INFO     | ready for new job
[2026-01-08 06:37:44] 2026-01-08 05:36:43,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 06:37:44] 2026-01-08 05:36:43,893 | INFO     | ***************************************
[2026-01-08 06:37:44] 2026-01-08 05:36:43,894 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 06:37:44] 2026-01-08 05:36:43,894 | INFO     | ***************************************
[2026-01-08 06:37:44] 2026-01-08 05:36:43,894 | INFO     | 
[2026-01-08 06:37:44] 2026-01-08 05:36:43,894 | INFO     | pilot is running in a VM
[2026-01-08 06:37:44] 2026-01-08 05:36:43,895 | INFO     | architecture information:
[2026-01-08 06:37:44] 2026-01-08 05:36:43,897 | INFO     | executing command: cat /etc/os-release
[2026-01-08 06:37:44] 2026-01-08 05:36:44,143 | INFO     | cat /etc/os-release:
[2026-01-08 06:37:44] NAME="CentOS Linux"
[2026-01-08 06:37:44] VERSION="7 (Core)"
[2026-01-08 06:37:44] ID="centos"
[2026-01-08 06:37:44] ID_LIKE="rhel fedora"
[2026-01-08 06:37:44] VERSION_ID="7"
[2026-01-08 06:37:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 06:37:44] ANSI_COLOR="0;31"
[2026-01-08 06:37:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 06:37:44] HOME_URL="https://www.centos.org/"
[2026-01-08 06:37:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 06:37:44] 
[2026-01-08 06:37:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 06:37:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 06:37:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 06:37:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 06:37:44] 
[2026-01-08 06:37:44] 2026-01-08 05:36:44,144 | INFO     | ***************************************
[2026-01-08 06:37:44] 2026-01-08 05:36:44,647 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-08 06:37:44] 2026-01-08 05:36:44,835 | INFO     | sufficient remaining disk space (497631100928 B)
[2026-01-08 06:37:44] 2026-01-08 05:36:44,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 06:37:44] 2026-01-08 05:36:44,836 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 06:37:44] 2026-01-08 05:36:44,836 | INFO     | update_server=False
[2026-01-08 06:37:44] 2026-01-08 05:36:44,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 06:37:44] 2026-01-08 05:36:44,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:37:44] 2026-01-08 05:36:44,839 | INFO     | aborting loop
[2026-01-08 06:37:44] 2026-01-08 05:36:45,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 06:37:44] 2026-01-08 05:36:45,125 | INFO     | all data control threads have been joined
[2026-01-08 06:37:44] 2026-01-08 05:36:45,842 | INFO     | [job] retrieve thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:45,845 | INFO     | [job] job monitor thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:46,126 | INFO     | all payload control threads have been joined
[2026-01-08 06:37:44] 2026-01-08 05:36:46,131 | INFO     | [data] control thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:46,177 | INFO     | [data] copytool_in thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:46,230 | INFO     | all job control threads have been joined
[2026-01-08 06:37:44] 2026-01-08 05:36:46,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:37:44] 2026-01-08 05:36:46,412 | INFO     | [payload] validate_post thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:46,535 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:46,739 | INFO     | [job] validate thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:46,836 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,016 | INFO     | [data] copytool_out thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,132 | INFO     | [payload] control thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,141 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,147 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,172 | INFO     | [payload] failed_post thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,236 | INFO     | [job] control thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,353 | INFO     | [job] queue monitor thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:36:47,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 06:37:44] 2026-01-08 05:36:51,558 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 06:37:44] 2026-01-08 05:37:00,526 [wrapper] supervise_pilot (15 min periods counter: 24)
[2026-01-08 06:37:44] 2026-01-08 05:37:13,835 | INFO     | PID=8967 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 06:37:44] 2026-01-08 05:37:13,836 | INFO     | .. there are 2 such processes running
[2026-01-08 06:37:44] 2026-01-08 05:37:13,836 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 06:37:44] 2026-01-08 05:37:13,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 06:37:44] 2026-01-08 05:37:13,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 06:37:44] 2026-01-08 05:37:33,241 | INFO     | [monitor] cgroup control has ended
[2026-01-08 06:37:44] 2026-01-08 05:37:34,911 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280436135744)>', '<ExcThread(monitor, started 140279839438592)>']
[2026-01-08 06:37:44] 2026-01-08 05:37:34,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 06:37:44] 2026-01-08 05:37:34,963 | INFO     | [monitor] control thread has ended
[2026-01-08 06:37:44] 2026-01-08 05:37:39,937 | INFO     | all workflow threads have been joined
[2026-01-08 06:37:44] 2026-01-08 05:37:39,937 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 06:37:44] 2026-01-08 05:37:39,937 | INFO     | traces error code: 0
[2026-01-08 06:37:44] 2026-01-08 05:37:39,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 06:37:44] 2026-01-08 05:37:40,305 [wrapper] ==== pilot stdout END ====
[2026-01-08 06:37:44] 2026-01-08 05:37:40,386 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 06:37:44] 2026-01-08 05:37:40,505 [wrapper] pilotpid: 8967
[2026-01-08 06:37:44] 2026-01-08 05:37:40,622 [wrapper] Pilot exit status: 0
[2026-01-08 06:37:44] 2026-01-08 05:37:41,081 [wrapper] pandaids: 6962320390
[2026-01-08 06:37:44] 2026-01-08 05:37:42,058 [wrapper] cleanup supervisor_pilot  2528 8968
[2026-01-08 06:37:44] 2026-01-08 05:37:42,119 [wrapper] Test setup, not cleaning
[2026-01-08 06:37:44] 2026-01-08 05:37:42,225 [wrapper] apfmon messages muted
[2026-01-08 06:37:44] 2026-01-08 05:37:42,325 [wrapper] ==== wrapper stdout END ====
[2026-01-08 06:37:44] 2026-01-08 05:37:42,447 [wrapper] ==== wrapper stderr END ====
[2026-01-08 06:37:44]  *** Error codes and diagnostics ***
[2026-01-08 06:37:44]     "exeErrorCode": 0,
[2026-01-08 06:37:44]     "exeErrorDiag": "",
[2026-01-08 06:37:44]     "pilotErrorCode": 0,
[2026-01-08 06:37:44]     "pilotErrorDiag": "",
[2026-01-08 06:37:44]  *** Listing of results directory ***
[2026-01-08 06:37:44] total 448368
[2026-01-08 06:37:44] -rwx------. 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc       100 Jan  8 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 06:37:44] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 00:47 run_atlas
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc       105 Jan  8 00:47 job.xml
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc      6388 Jan  8 00:47 init_data.xml
[2026-01-08 06:37:44] -rw-r--r--. 2 boinc boinc 228441141 Jan  8 00:47 EVNT.47898824._000615.pool.root.1
[2026-01-08 06:37:44] -rw-r--r--. 2 boinc boinc     15847 Jan  8 00:47 start_atlas.sh
[2026-01-08 06:37:44] drwxrwx--x. 2 boinc boinc        68 Jan  8 00:47 shared
[2026-01-08 06:37:44] -rw-r--r--. 2 boinc boinc    592398 Jan  8 00:47 input.tar.gz
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc         0 Jan  8 00:47 boinc_lockfile
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc      2519 Jan  8 00:48 pandaJob.out
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc    989785 Jan  8 00:51 agis_schedconf.cvmfs.json
[2026-01-08 06:37:44] drwx------. 5 boinc boinc      4096 Jan  8 00:51 pilot3
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc 220209132 Jan  8 06:33 HITS.47898826._014203.pool.root.1
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc       531 Jan  8 06:33 boinc_task_state.xml
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc      1021 Jan  8 06:34 memory_monitor_summary.json
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc   1516240 Jan  8 06:34 agis_ddmendpoints.agis.ALL.json
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc    537734 Jan  8 06:34 log.47898826._014203.job.log.tgz.1
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc      7785 Jan  8 06:36 heartbeat.json
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc        95 Jan  8 06:37 pilot_heartbeat.json
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc      8192 Jan  8 06:37 boinc_mmap_file
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc        28 Jan  8 06:37 wrapper_checkpoint.txt
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc      4883 Jan  8 06:37 pilotlog.txt
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc   2750375 Jan  8 06:37 log.47898826._014203.job.log.1
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc       357 Jan  8 06:37 output.list
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc       620 Jan  8 06:37 runtime_log
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc   3307520 Jan  8 06:37 result.tar.gz
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc      8817 Jan  8 06:37 runtime_log.err
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc       657 Jan  8 06:37 kkgMDmtopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsqdKDmhyTWxm.diag
[2026-01-08 06:37:44] -rw-r--r--. 1 boinc boinc     20745 Jan  8 06:37 stderr.txt
[2026-01-08 06:37:44] HITS file was successfully produced:
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc 220209132 Jan  8 06:33 shared/HITS.pool.root.1
[2026-01-08 06:37:44]  *** Contents of shared directory: ***
[2026-01-08 06:37:44] total 441964
[2026-01-08 06:37:44] -rw-r--r--. 2 boinc boinc 228441141 Jan  8 00:47 ATLAS.root_0
[2026-01-08 06:37:44] -rw-r--r--. 2 boinc boinc     15847 Jan  8 00:47 start_atlas.sh
[2026-01-08 06:37:44] -rw-r--r--. 2 boinc boinc    592398 Jan  8 00:47 input.tar.gz
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc 220209132 Jan  8 06:33 HITS.pool.root.1
[2026-01-08 06:37:44] -rw-------. 1 boinc boinc   3307520 Jan  8 06:37 result.tar.gz
06:37:46 (4856): run_atlas exited; CPU time 81638.127042
06:37:46 (4856): called boinc_finish(0)

</stderr_txt>
]]>

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