Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:48:40 (30490): wrapper (7.7.26015): starting
06:48:40 (30490): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 06:48:40] Arguments: --nthreads 8
[2026-01-08 06:48:40] Threads: 8
[2026-01-08 06:48:40] Checking for CVMFS
[2026-01-08 06:48:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 06:48:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 06:48:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 06:48:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 06:48:44] 2.11.2.0 17366 33558 96616 154893 2 61 15623189 25165824 96 130560 0 15472406 99.814 10640515 3998 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 06:48:44] CVMFS is ok
[2026-01-08 06:48:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 06:48:44] Checking for apptainer binary...
[2026-01-08 06:48:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 06:48:44] Running /usr/bin/apptainer --version
[2026-01-08 06:48:44] apptainer version 1.3.2-1.el7
[2026-01-08 06:48:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 06:48:47] cg-vwn463.simple-grid.lan
[2026-01-08 06:48:47] apptainer works
[2026-01-08 06:48:47] Set ATHENA_PROC_NUMBER=8
[2026-01-08 06:48:47] Set ATHENA_CORE_NUMBER=8
[2026-01-08 06:48:47] Starting ATLAS job with PandaID=6962320182
[2026-01-08 06:48:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 12:42:43]  *** The last 200 lines of the pilot log: ***
[2026-01-08 12:42:43] 2026-01-08 11:41:53,719 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 12:42:43] 2026-01-08 11:41:53,720 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,721 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6962320182/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,722 | INFO     | extracted standard info from prmon json
[2026-01-08 12:42:43] 2026-01-08 11:41:53,722 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 12:42:43] 2026-01-08 11:41:53,722 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 12:42:43] 2026-01-08 11:41:53,723 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 12:42:43] 2026-01-08 11:41:53,723 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 12:42:43] 2026-01-08 11:41:53,739 | INFO     | fitting pss+swap vs Time
[2026-01-08 12:42:43] 2026-01-08 11:41:53,740 | INFO     | sum of square deviations: 11450045382.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,743 | INFO     | sum of deviations: 153008589268.99994
[2026-01-08 12:42:43] 2026-01-08 11:41:53,743 | INFO     | mean x: 1767862263.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,743 | INFO     | mean y: 2436017.993993994
[2026-01-08 12:42:43] 2026-01-08 11:41:53,744 | INFO     | intersect: -23621759507.79556
[2026-01-08 12:42:43] 2026-01-08 11:41:53,744 | INFO     | chi2: 7.606883690278023
[2026-01-08 12:42:43] 2026-01-08 11:41:53,745 | INFO     | sum of square deviations: 10941980042.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,748 | INFO     | sum of deviations: 195145795156.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,748 | INFO     | mean x: 1767862110.5
[2026-01-08 12:42:43] 2026-01-08 11:41:53,748 | INFO     | mean y: 2448543.536585366
[2026-01-08 12:42:43] 2026-01-08 11:41:53,749 | INFO     | intersect: -31526658250.248848
[2026-01-08 12:42:43] 2026-01-08 11:41:53,749 | INFO     | chi2: 6.061760327427477
[2026-01-08 12:42:43] 2026-01-08 11:41:53,749 | INFO     | current chi2=6.061760327427477 (change=20.312172839257304 %)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,749 | INFO     | right removable region: 327
[2026-01-08 12:42:43] 2026-01-08 11:41:53,750 | INFO     | sum of square deviations: 10941980042.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,761 | INFO     | sum of deviations: 40994093459.00001
[2026-01-08 12:42:43] 2026-01-08 11:41:53,762 | INFO     | mean x: 1767862415.5
[2026-01-08 12:42:43] 2026-01-08 11:41:53,762 | INFO     | mean y: 2469618.5182926827
[2026-01-08 12:42:43] 2026-01-08 11:41:53,762 | INFO     | intersect: -6620821303.735476
[2026-01-08 12:42:43] 2026-01-08 11:41:53,763 | INFO     | chi2: 3.2200385679727033
[2026-01-08 12:42:43] 2026-01-08 11:41:53,763 | INFO     | current chi2=3.2200385679727033 (change=57.66941234965807 %)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,763 | INFO     | sum of square deviations: 10449170802.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,767 | INFO     | sum of deviations: -21479537098.999996
[2026-01-08 12:42:43] 2026-01-08 11:41:53,767 | INFO     | mean x: 1767862568.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,767 | INFO     | mean y: 2488875.882352941
[2026-01-08 12:42:43] 2026-01-08 11:41:53,767 | INFO     | intersect: 3636544662.205732
[2026-01-08 12:42:43] 2026-01-08 11:41:53,768 | INFO     | chi2: 1.6633201192929605
[2026-01-08 12:42:43] 2026-01-08 11:41:53,768 | INFO     | current chi2=1.6633201192929605 (change=48.34471438209616 %)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,768 | INFO     | sum of square deviations: 9971385099.5
[2026-01-08 12:42:43] 2026-01-08 11:41:53,771 | INFO     | sum of deviations: -25760966913.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,772 | INFO     | mean x: 1767862720.5
[2026-01-08 12:42:43] 2026-01-08 11:41:53,772 | INFO     | mean y: 2490236.427672956
[2026-01-08 12:42:43] 2026-01-08 11:41:53,772 | INFO     | intersect: 4569744694.568128
[2026-01-08 12:42:43] 2026-01-08 11:41:53,772 | INFO     | chi2: 1.6481635045404524
[2026-01-08 12:42:43] 2026-01-08 11:41:53,773 | INFO     | current chi2=1.6481635045404524 (change=0.9112265628669789 %)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,773 | INFO     | left removable region: 30
[2026-01-08 12:42:43] 2026-01-08 11:41:53,773 | INFO     | sum of square deviations: 8123493708.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,776 | INFO     | sum of deviations: 9814434265.000004
[2026-01-08 12:42:43] 2026-01-08 11:41:53,776 | INFO     | mean x: 1767862995.0
[2026-01-08 12:42:43] 2026-01-08 11:41:53,776 | INFO     | mean y: 2506727.558922559
[2026-01-08 12:42:43] 2026-01-08 11:41:53,776 | INFO     | intersect: -2133344641.029782
[2026-01-08 12:42:43] 2026-01-08 11:41:53,777 | INFO     | chi2: 0.0006046013236413636
[2026-01-08 12:42:43] 2026-01-08 11:41:53,777 | INFO     | current memory leak: 1.21 B/s (using 297 data points, chi2=0.00)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | ..............................
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | . Timing measurements:
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | . get job = 0 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | . initial setup = 12 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | . payload setup = 150 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,778 | INFO     | . stage-in = 0 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,779 | INFO     | . payload execution = 20435 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,779 | INFO     | . stage-out = 3 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,779 | INFO     | . log creation = 1 s
[2026-01-08 12:42:43] 2026-01-08 11:41:53,779 | INFO     | ..............................
[2026-01-08 12:42:43] 2026-01-08 11:41:53,814 | INFO     | time since job start (20936s) is within the limit (174528.0s)
[2026-01-08 12:42:43] 2026-01-08 11:41:54,418 | INFO     | 
[2026-01-08 12:42:43] 2026-01-08 11:41:54,418 | INFO     | job summary report
[2026-01-08 12:42:43] 2026-01-08 11:41:54,418 | INFO     | --------------------------------------------------
[2026-01-08 12:42:43] 2026-01-08 11:41:54,418 | INFO     | PanDA job id: 6962320182
[2026-01-08 12:42:43] 2026-01-08 11:41:54,418 | INFO     | task id: 47898826
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | errors: (none)
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | pilot state: finished 
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | transexitcode: 0
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | exeerrorcode: 0
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | exeerrordiag: 
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | exitcode: 0
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | exitmsg: OK
[2026-01-08 12:42:43] 2026-01-08 11:41:54,419 | INFO     | cpuconsumptiontime: 77106 s
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | nevents: 400
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | neventsw: 0
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | pid: 8592
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | pgrp: 8592
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | corecount: 8
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | event service: False
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | sizes: {0: 2283743, 1: 2283827, 2: 2284026, 13: 2284026, 23: 2284082, 34: 2284110, 45: 2284266, 56: 2284294, 66: 2284322, 77: 2284350, 88: 2284406, 99: 2284714, 10
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | --------------------------------------------------
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | 
[2026-01-08 12:42:43] 2026-01-08 11:41:54,420 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-01-08 12:42:43] 2026-01-08 11:41:55,118 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,120 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 12:42:43] 2026-01-08 11:41:55,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,121 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 12:42:43] 2026-01-08 11:41:55,121 | INFO     | job 6962320182 has completed (purged errors)
[2026-01-08 12:42:43] 2026-01-08 11:41:55,121 | INFO     | overall cleanup function is called
[2026-01-08 12:42:43] 2026-01-08 11:41:56,130 | INFO     | --- collectZombieJob: --- 10, [8592]
[2026-01-08 12:42:43] 2026-01-08 11:41:56,130 | INFO     | zombie collector waiting for pid 8592
[2026-01-08 12:42:43] 2026-01-08 11:41:56,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 12:42:43] 2026-01-08 11:41:56,130 | INFO     | collected zombie processes
[2026-01-08 12:42:43] 2026-01-08 11:41:56,130 | INFO     | will attempt to kill all subprocesses of pid=8592
[2026-01-08 12:42:43] 2026-01-08 11:41:56,215 | INFO     | process IDs to be killed: [8592] (in reverse order)
[2026-01-08 12:42:43] 2026-01-08 11:41:57,175 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 12:42:43] 2026-01-08 11:41:57,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 12:42:43] 2026-01-08 11:41:57,178 | INFO     | did not find any defunct processes belonging to 8592
[2026-01-08 12:42:43] 2026-01-08 11:41:57,180 | INFO     | did not find any defunct processes belonging to 8592
[2026-01-08 12:42:43] 2026-01-08 11:41:57,180 | INFO     | ready for new job
[2026-01-08 12:42:43] 2026-01-08 11:41:57,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 12:42:43] 2026-01-08 11:41:57,182 | INFO     | ***************************************
[2026-01-08 12:42:43] 2026-01-08 11:41:57,183 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 12:42:43] 2026-01-08 11:41:57,183 | INFO     | ***************************************
[2026-01-08 12:42:43] 2026-01-08 11:41:57,183 | INFO     | 
[2026-01-08 12:42:43] 2026-01-08 11:41:57,183 | INFO     | pilot is running in a VM
[2026-01-08 12:42:43] 2026-01-08 11:41:57,184 | INFO     | architecture information:
[2026-01-08 12:42:43] 2026-01-08 11:41:57,205 | INFO     | executing command: cat /etc/os-release
[2026-01-08 12:42:43] 2026-01-08 11:41:57,522 | INFO     | cat /etc/os-release:
[2026-01-08 12:42:43] NAME="CentOS Linux"
[2026-01-08 12:42:43] VERSION="7 (Core)"
[2026-01-08 12:42:43] ID="centos"
[2026-01-08 12:42:43] ID_LIKE="rhel fedora"
[2026-01-08 12:42:43] VERSION_ID="7"
[2026-01-08 12:42:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 12:42:43] ANSI_COLOR="0;31"
[2026-01-08 12:42:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 12:42:43] HOME_URL="https://www.centos.org/"
[2026-01-08 12:42:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 12:42:43] 
[2026-01-08 12:42:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 12:42:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 12:42:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 12:42:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 12:42:43] 
[2026-01-08 12:42:43] 2026-01-08 11:41:57,523 | INFO     | ***************************************
[2026-01-08 12:42:43] 2026-01-08 11:41:58,026 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-01-08 12:42:43] 2026-01-08 11:41:58,237 | INFO     | sufficient remaining disk space (496422092800 B)
[2026-01-08 12:42:43] 2026-01-08 11:41:58,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 12:42:43] 2026-01-08 11:41:58,237 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 12:42:43] 2026-01-08 11:41:58,237 | INFO     | update_server=False
[2026-01-08 12:42:43] 2026-01-08 11:41:58,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 12:42:43] 2026-01-08 11:41:58,254 | INFO     | all data control threads have been joined
[2026-01-08 12:42:43] 2026-01-08 11:41:58,607 | INFO     | all job control threads have been joined
[2026-01-08 12:42:43] 2026-01-08 11:41:58,736 | INFO     | all payload control threads have been joined
[2026-01-08 12:42:43] 2026-01-08 11:41:58,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 12:42:43] 2026-01-08 11:41:58,851 | INFO     | aborting loop
[2026-01-08 12:42:43] 2026-01-08 11:41:58,962 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 12:42:43] 2026-01-08 11:41:59,243 | INFO     | [job] retrieve thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,260 | INFO     | [data] control thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,303 | INFO     | [payload] validate_post thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 12:42:43] 2026-01-08 11:41:59,444 | INFO     | [job] validate thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 12:42:43] 2026-01-08 11:41:59,576 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,613 | INFO     | [job] control thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,742 | INFO     | [payload] control thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,857 | INFO     | [job] job monitor thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,968 | INFO     | [job] queue monitor thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:41:59,991 | INFO     | [payload] failed_post thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:00,332 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:00,337 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:00,433 | INFO     | [data] copytool_in thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:00,588 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:01,338 | INFO     | [data] copytool_out thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:03,528 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 12:42:43] 2026-01-08 11:42:26,932 | INFO     | PID=2021 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 12:42:43] 2026-01-08 11:42:26,932 | INFO     | .. there are 2 such processes running
[2026-01-08 12:42:43] 2026-01-08 11:42:26,932 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 12:42:43] 2026-01-08 11:42:26,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 12:42:43] 2026-01-08 11:42:26,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 12:42:43] 2026-01-08 11:42:32,396 | INFO     | [monitor] cgroup control has ended
[2026-01-08 12:42:43] 2026-01-08 11:42:33,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835084035904)>', '<ExcThread(monitor, started 139834261759744)>']
[2026-01-08 12:42:43] 2026-01-08 11:42:33,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 12:42:43] 2026-01-08 11:42:33,973 | INFO     | [monitor] control thread has ended
[2026-01-08 12:42:43] 2026-01-08 11:42:38,723 | INFO     | all workflow threads have been joined
[2026-01-08 12:42:43] 2026-01-08 11:42:38,723 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 12:42:43] 2026-01-08 11:42:38,723 | INFO     | traces error code: 0
[2026-01-08 12:42:43] 2026-01-08 11:42:38,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 12:42:43] 2026-01-08 11:42:39,304 [wrapper] ==== pilot stdout END ====
[2026-01-08 12:42:43] 2026-01-08 11:42:39,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 12:42:43] 2026-01-08 11:42:39,463 [wrapper] pilotpid: 2021
[2026-01-08 12:42:43] 2026-01-08 11:42:39,501 [wrapper] Pilot exit status: 0
[2026-01-08 12:42:43] 2026-01-08 11:42:39,936 [wrapper] pandaids: 6962320182
[2026-01-08 12:42:43] 2026-01-08 11:42:40,383 [wrapper] cleanup supervisor_pilot  7487 2022
[2026-01-08 12:42:43] 2026-01-08 11:42:40,486 [wrapper] Test setup, not cleaning
[2026-01-08 12:42:43] 2026-01-08 11:42:40,601 [wrapper] apfmon messages muted
[2026-01-08 12:42:43] 2026-01-08 11:42:40,700 [wrapper] ==== wrapper stdout END ====
[2026-01-08 12:42:43] 2026-01-08 11:42:40,820 [wrapper] ==== wrapper stderr END ====
[2026-01-08 12:42:43]  *** Error codes and diagnostics ***
[2026-01-08 12:42:43]     "exeErrorCode": 0,
[2026-01-08 12:42:43]     "exeErrorDiag": "",
[2026-01-08 12:42:43]     "pilotErrorCode": 0,
[2026-01-08 12:42:43]     "pilotErrorDiag": "",
[2026-01-08 12:42:43]  *** Listing of results directory ***
[2026-01-08 12:42:43] total 446100
[2026-01-08 12:42:43] -rwx------. 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc       100 Jan  8 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 12:42:43] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 06:48 run_atlas
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc       105 Jan  8 06:48 job.xml
[2026-01-08 12:42:43] -rw-r--r--. 2 boinc boinc 224411889 Jan  8 06:48 EVNT.47898824._000607.pool.root.1
[2026-01-08 12:42:43] -rw-r--r--. 2 boinc boinc     15847 Jan  8 06:48 start_atlas.sh
[2026-01-08 12:42:43] drwxrwx--x. 2 boinc boinc        68 Jan  8 06:48 shared
[2026-01-08 12:42:43] -rw-r--r--. 2 boinc boinc    592396 Jan  8 06:48 input.tar.gz
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc      6390 Jan  8 06:48 init_data.xml
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc         0 Jan  8 06:48 boinc_lockfile
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc      2519 Jan  8 06:48 pandaJob.out
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc    989827 Jan  8 06:52 agis_schedconf.cvmfs.json
[2026-01-08 12:42:43] drwx------. 5 boinc boinc      4096 Jan  8 06:52 pilot3
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc 221820773 Jan  8 12:38 HITS.47898826._014028.pool.root.1
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc       531 Jan  8 12:38 boinc_task_state.xml
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc      1016 Jan  8 12:39 memory_monitor_summary.json
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc   1516240 Jan  8 12:39 agis_ddmendpoints.agis.ALL.json
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc    544198 Jan  8 12:39 log.47898826._014028.job.log.tgz.1
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc        95 Jan  8 12:41 pilot_heartbeat.json
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc      7775 Jan  8 12:41 heartbeat.json
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc      8192 Jan  8 12:42 boinc_mmap_file
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc        28 Jan  8 12:42 wrapper_checkpoint.txt
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc      4884 Jan  8 12:42 pilotlog.txt
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc   2790793 Jan  8 12:42 log.47898826._014028.job.log.1
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc       357 Jan  8 12:42 output.list
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc       620 Jan  8 12:42 runtime_log
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc   3358720 Jan  8 12:42 result.tar.gz
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc      8833 Jan  8 12:42 runtime_log.err
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc       657 Jan  8 12:42 ikOMDmtopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgqdKDm9vCh5m.diag
[2026-01-08 12:42:43] -rw-r--r--. 1 boinc boinc     20769 Jan  8 12:42 stderr.txt
[2026-01-08 12:42:43] HITS file was successfully produced:
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc 221820773 Jan  8 12:38 shared/HITS.pool.root.1
[2026-01-08 12:42:43]  *** Contents of shared directory: ***
[2026-01-08 12:42:43] total 439656
[2026-01-08 12:42:43] -rw-r--r--. 2 boinc boinc 224411889 Jan  8 06:48 ATLAS.root_0
[2026-01-08 12:42:43] -rw-r--r--. 2 boinc boinc     15847 Jan  8 06:48 start_atlas.sh
[2026-01-08 12:42:43] -rw-r--r--. 2 boinc boinc    592396 Jan  8 06:48 input.tar.gz
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc 221820773 Jan  8 12:38 HITS.pool.root.1
[2026-01-08 12:42:43] -rw-------. 1 boinc boinc   3358720 Jan  8 12:42 result.tar.gz
12:42:45 (30490): run_atlas exited; CPU time 77307.141512
12:42:45 (30490): called boinc_finish(0)

</stderr_txt>
]]>

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