Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:42:42 (28198): wrapper (7.7.26015): starting
00:42:42 (28198): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 00:42:42] Arguments: --nthreads 8
[2026-01-08 00:42:42] Threads: 8
[2026-01-08 00:42:42] Checking for CVMFS
[2026-01-08 00:42:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 00:42:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 00:42:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 00:42:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 00:42:47] 2.11.2.0 25293 33192 129684 154884 1 11 12768407 25165824 96 130560 0 12478623 99.796 9033015 3781 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 00:42:47] CVMFS is ok
[2026-01-08 00:42:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 00:42:48] Checking for apptainer binary...
[2026-01-08 00:42:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 00:42:48] Running /usr/bin/apptainer --version
[2026-01-08 00:42:48] apptainer version 1.3.2-1.el7
[2026-01-08 00:42:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 00:43:56] INFO: fuse-overlayfs mount took an unexpectedly long time: 2.3s cg-vwn372.simple-grid.lan
[2026-01-08 00:43:56] apptainer works
[2026-01-08 00:43:56] Set ATHENA_PROC_NUMBER=8
[2026-01-08 00:43:56] Set ATHENA_CORE_NUMBER=8
[2026-01-08 00:43:56] Starting ATLAS job with PandaID=6962320541
[2026-01-08 00:43:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 06:30:34]  *** The last 200 lines of the pilot log: ***
[2026-01-08 06:30:34] 2026-01-08 05:29:29,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 06:30:34] 2026-01-08 05:29:29,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 06:30:34] 2026-01-08 05:29:29,886 | INFO     | fitting pss+swap vs Time
[2026-01-08 06:30:34] 2026-01-08 05:29:29,887 | INFO     | sum of square deviations: 10546523325.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,891 | INFO     | sum of deviations: 247158358387.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,891 | INFO     | mean x: 1767840154.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,891 | INFO     | mean y: 2410974.37654321
[2026-01-08 06:30:34] 2026-01-08 05:29:29,891 | INFO     | intersect: -41427020982.703064
[2026-01-08 06:30:34] 2026-01-08 05:29:29,898 | INFO     | chi2: 9.700172897350523
[2026-01-08 06:30:34] 2026-01-08 05:29:29,899 | INFO     | sum of square deviations: 10065751520.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,903 | INFO     | sum of deviations: 264357780831.99997
[2026-01-08 06:30:34] 2026-01-08 05:29:29,903 | INFO     | mean x: 1767840002.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,903 | INFO     | mean y: 2416344.962382445
[2026-01-08 06:30:34] 2026-01-08 05:29:29,903 | INFO     | intersect: -46426532240.364746
[2026-01-08 06:30:34] 2026-01-08 05:29:29,904 | INFO     | chi2: 8.990078090942902
[2026-01-08 06:30:34] 2026-01-08 05:29:29,904 | INFO     | current chi2=8.990078090942902 (change=7.320434531652261 %)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,904 | INFO     | right removable region: 318
[2026-01-08 06:30:34] 2026-01-08 05:29:29,905 | INFO     | sum of square deviations: 10065751520.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,908 | INFO     | sum of deviations: 131679167618.99995
[2026-01-08 06:30:34] 2026-01-08 05:29:29,909 | INFO     | mean x: 1767840307.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,909 | INFO     | mean y: 2447595.514106583
[2026-01-08 06:30:34] 2026-01-08 05:29:29,909 | INFO     | intersect: -23124264766.354065
[2026-01-08 06:30:34] 2026-01-08 05:29:29,909 | INFO     | chi2: 4.4293169523676275
[2026-01-08 06:30:34] 2026-01-08 05:29:29,910 | INFO     | current chi2=4.4293169523676275 (change=54.33775254070535 %)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,910 | INFO     | sum of square deviations: 9599817202.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,914 | INFO     | sum of deviations: 40808951322.00001
[2026-01-08 06:30:34] 2026-01-08 05:29:29,914 | INFO     | mean x: 1767840459.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,914 | INFO     | mean y: 2477314.592356688
[2026-01-08 06:30:34] 2026-01-08 05:29:29,914 | INFO     | intersect: -7512636122.985375
[2026-01-08 06:30:34] 2026-01-08 05:29:29,915 | INFO     | chi2: 1.3985482498552104
[2026-01-08 06:30:34] 2026-01-08 05:29:29,915 | INFO     | current chi2=1.3985482498552104 (change=68.42519366089536 %)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,916 | INFO     | sum of square deviations: 9148487810.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,919 | INFO     | sum of deviations: 7329169764.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,919 | INFO     | mean x: 1767840612.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,919 | INFO     | mean y: 2488552.372168285
[2026-01-08 06:30:34] 2026-01-08 05:29:29,920 | INFO     | intersect: -1413789659.9547775
[2026-01-08 06:30:34] 2026-01-08 05:29:29,920 | INFO     | chi2: 0.7919827466070629
[2026-01-08 06:30:34] 2026-01-08 05:29:29,920 | INFO     | current chi2=0.7919827466070629 (change=43.37108164204877 %)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,921 | INFO     | sum of square deviations: 8711530780.0
[2026-01-08 06:30:34] 2026-01-08 05:29:29,924 | INFO     | sum of deviations: 3346881967.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,925 | INFO     | mean x: 1767840764.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,925 | INFO     | mean y: 2489944.134868421
[2026-01-08 06:30:34] 2026-01-08 05:29:29,925 | INFO     | intersect: -676696587.5479668
[2026-01-08 06:30:34] 2026-01-08 05:29:29,925 | INFO     | chi2: 0.7882006210031202
[2026-01-08 06:30:34] 2026-01-08 05:29:29,926 | INFO     | current chi2=0.7882006210031202 (change=0.4775515148714763 %)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,926 | INFO     | left removable region: 40
[2026-01-08 06:30:34] 2026-01-08 05:29:29,926 | INFO     | sum of square deviations: 6662039329.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,929 | INFO     | sum of deviations: 14207198503.499998
[2026-01-08 06:30:34] 2026-01-08 05:29:29,929 | INFO     | mean x: 1767841191.5
[2026-01-08 06:30:34] 2026-01-08 05:29:29,929 | INFO     | mean y: 2500397.464028777
[2026-01-08 06:30:34] 2026-01-08 05:29:29,929 | INFO     | intersect: -3767526990.2592235
[2026-01-08 06:30:34] 2026-01-08 05:29:29,930 | INFO     | chi2: 0.001453435490769912
[2026-01-08 06:30:34] 2026-01-08 05:29:29,930 | INFO     | current memory leak: 2.13 B/s (using 278 data points, chi2=0.00)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,931 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 06:30:34] 2026-01-08 05:29:29,931 | INFO     | ..............................
[2026-01-08 06:30:34] 2026-01-08 05:29:29,931 | INFO     | . Timing measurements:
[2026-01-08 06:30:34] 2026-01-08 05:29:29,931 | INFO     | . get job = 0 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,931 | INFO     | . initial setup = 10 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,931 | INFO     | . payload setup = 146 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,932 | INFO     | . stage-in = 0 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,932 | INFO     | . payload execution = 19906 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,932 | INFO     | . stage-out = 4 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,932 | INFO     | . log creation = 1 s
[2026-01-08 06:30:34] 2026-01-08 05:29:29,932 | INFO     | ..............................
[2026-01-08 06:30:34] 2026-01-08 05:29:30,065 | INFO     | 
[2026-01-08 06:30:34] 2026-01-08 05:29:30,065 | INFO     | job summary report
[2026-01-08 06:30:34] 2026-01-08 05:29:30,065 | INFO     | --------------------------------------------------
[2026-01-08 06:30:34] 2026-01-08 05:29:30,065 | INFO     | PanDA job id: 6962320541
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | task id: 47898826
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | errors: (none)
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | pilot state: finished 
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | transexitcode: 0
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | exeerrorcode: 0
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | exeerrordiag: 
[2026-01-08 06:30:34] 2026-01-08 05:29:30,066 | INFO     | exitcode: 0
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | exitmsg: OK
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | cpuconsumptiontime: 81199 s
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | nevents: 400
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | neventsw: 0
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | pid: 6582
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | pgrp: 6582
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | corecount: 8
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | event service: False
[2026-01-08 06:30:34] 2026-01-08 05:29:30,067 | INFO     | sizes: {0: 2283743, 1: 2283998, 12: 2283998, 23: 2284026, 33: 2284054, 44: 2284110, 55: 2284266, 66: 2284294, 76: 2284322, 87: 2284378, 94: 2284668, 98: 2284976, 2
[2026-01-08 06:30:34] 2026-01-08 05:29:30,068 | INFO     | --------------------------------------------------
[2026-01-08 06:30:34] 2026-01-08 05:29:30,068 | INFO     | 
[2026-01-08 06:30:34] 2026-01-08 05:29:30,068 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-08 06:30:34] 2026-01-08 05:29:30,693 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,695 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 06:30:34] 2026-01-08 05:29:30,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,696 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 06:30:34] 2026-01-08 05:29:30,696 | INFO     | job 6962320541 has completed (purged errors)
[2026-01-08 06:30:34] 2026-01-08 05:29:30,696 | INFO     | overall cleanup function is called
[2026-01-08 06:30:34] 2026-01-08 05:29:31,706 | INFO     | --- collectZombieJob: --- 10, [6582]
[2026-01-08 06:30:34] 2026-01-08 05:29:31,706 | INFO     | zombie collector waiting for pid 6582
[2026-01-08 06:30:34] 2026-01-08 05:29:31,706 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 06:30:34] 2026-01-08 05:29:31,706 | INFO     | collected zombie processes
[2026-01-08 06:30:34] 2026-01-08 05:29:31,706 | INFO     | will attempt to kill all subprocesses of pid=6582
[2026-01-08 06:30:34] 2026-01-08 05:29:31,810 | INFO     | process IDs to be killed: [6582] (in reverse order)
[2026-01-08 06:30:34] 2026-01-08 05:29:32,923 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 06:30:34] 2026-01-08 05:29:32,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 06:30:34] 2026-01-08 05:29:32,926 | INFO     | did not find any defunct processes belonging to 6582
[2026-01-08 06:30:34] 2026-01-08 05:29:32,928 | INFO     | did not find any defunct processes belonging to 6582
[2026-01-08 06:30:34] 2026-01-08 05:29:32,928 | INFO     | ready for new job
[2026-01-08 06:30:34] 2026-01-08 05:29:32,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 06:30:34] 2026-01-08 05:29:32,931 | INFO     | ***************************************
[2026-01-08 06:30:34] 2026-01-08 05:29:32,931 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 06:30:34] 2026-01-08 05:29:32,931 | INFO     | ***************************************
[2026-01-08 06:30:34] 2026-01-08 05:29:32,931 | INFO     | 
[2026-01-08 06:30:34] 2026-01-08 05:29:32,932 | INFO     | pilot is running in a VM
[2026-01-08 06:30:34] 2026-01-08 05:29:32,932 | INFO     | architecture information:
[2026-01-08 06:30:34] 2026-01-08 05:29:32,948 | INFO     | executing command: cat /etc/os-release
[2026-01-08 06:30:34] 2026-01-08 05:29:33,162 | INFO     | cat /etc/os-release:
[2026-01-08 06:30:34] NAME="CentOS Linux"
[2026-01-08 06:30:34] VERSION="7 (Core)"
[2026-01-08 06:30:34] ID="centos"
[2026-01-08 06:30:34] ID_LIKE="rhel fedora"
[2026-01-08 06:30:34] VERSION_ID="7"
[2026-01-08 06:30:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 06:30:34] ANSI_COLOR="0;31"
[2026-01-08 06:30:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 06:30:34] HOME_URL="https://www.centos.org/"
[2026-01-08 06:30:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 06:30:34] 
[2026-01-08 06:30:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 06:30:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 06:30:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 06:30:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 06:30:34] 
[2026-01-08 06:30:34] 2026-01-08 05:29:33,163 | INFO     | ***************************************
[2026-01-08 06:30:34] 2026-01-08 05:29:33,666 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-08 06:30:34] 2026-01-08 05:29:33,958 | INFO     | sufficient remaining disk space (497556652032 B)
[2026-01-08 06:30:34] 2026-01-08 05:29:33,959 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 06:30:34] 2026-01-08 05:29:33,959 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 06:30:34] 2026-01-08 05:29:33,959 | INFO     | update_server=False
[2026-01-08 06:30:34] 2026-01-08 05:29:33,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 06:30:34] 2026-01-08 05:29:33,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 06:30:34] 2026-01-08 05:29:34,365 | INFO     | all job control threads have been joined
[2026-01-08 06:30:34] 2026-01-08 05:29:34,426 | INFO     | all payload control threads have been joined
[2026-01-08 06:30:34] 2026-01-08 05:29:34,773 | INFO     | all data control threads have been joined
[2026-01-08 06:30:34] 2026-01-08 05:29:34,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 06:30:34] 2026-01-08 05:29:34,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:30:34] 2026-01-08 05:29:34,808 | INFO     | aborting loop
[2026-01-08 06:30:34] 2026-01-08 05:29:34,965 | INFO     | [job] retrieve thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:30:34] 2026-01-08 05:29:35,167 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,303 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,371 | INFO     | [job] control thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,432 | INFO     | [payload] control thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,504 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,613 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,621 | INFO     | [payload] failed_post thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,779 | INFO     | [data] control thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,799 | INFO     | [data] copytool_in thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,814 | INFO     | [job] job monitor thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:35,831 | INFO     | [job] validate thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:36,086 | INFO     | [job] queue monitor thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:36,224 | INFO     | [payload] validate_post thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:36,804 | INFO     | [data] copytool_out thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:29:37,969 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 06:30:34] 2026-01-08 05:30:02,908 | INFO     | PID=32434 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 06:30:34] 2026-01-08 05:30:02,908 | INFO     | .. there are 2 such processes running
[2026-01-08 06:30:34] 2026-01-08 05:30:02,908 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 06:30:34] 2026-01-08 05:30:02,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 06:30:34] 2026-01-08 05:30:02,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 06:30:34] 2026-01-08 05:30:23,237 | INFO     | [monitor] cgroup control has ended
[2026-01-08 06:30:34] 2026-01-08 05:30:24,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140533794375488)>', '<ExcThread(monitor, started 140533116684032)>']
[2026-01-08 06:30:34] 2026-01-08 05:30:24,034 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 06:30:34] 2026-01-08 05:30:24,034 | INFO     | [monitor] control thread has ended
[2026-01-08 06:30:34] 2026-01-08 05:30:29,052 | INFO     | all workflow threads have been joined
[2026-01-08 06:30:34] 2026-01-08 05:30:29,052 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 06:30:34] 2026-01-08 05:30:29,052 | INFO     | traces error code: 0
[2026-01-08 06:30:34] 2026-01-08 05:30:29,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 06:30:34] 2026-01-08 05:30:29,532 [wrapper] ==== pilot stdout END ====
[2026-01-08 06:30:34] 2026-01-08 05:30:29,604 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 06:30:34] 2026-01-08 05:30:29,711 [wrapper] pilotpid: 32434
[2026-01-08 06:30:34] 2026-01-08 05:30:29,818 [wrapper] Pilot exit status: 0
[2026-01-08 06:30:34] 2026-01-08 05:30:30,247 [wrapper] pandaids: 6962320541
[2026-01-08 06:30:34] 2026-01-08 05:30:31,052 [wrapper] cleanup supervisor_pilot 19149 32435
[2026-01-08 06:30:34] 2026-01-08 05:30:31,173 [wrapper] Test setup, not cleaning
[2026-01-08 06:30:34] 2026-01-08 05:30:31,286 [wrapper] apfmon messages muted
[2026-01-08 06:30:34] 2026-01-08 05:30:31,394 [wrapper] ==== wrapper stdout END ====
[2026-01-08 06:30:34] 2026-01-08 05:30:31,505 [wrapper] ==== wrapper stderr END ====
[2026-01-08 06:30:34]  *** Error codes and diagnostics ***
[2026-01-08 06:30:34]     "exeErrorCode": 0,
[2026-01-08 06:30:34]     "exeErrorDiag": "",
[2026-01-08 06:30:34]     "pilotErrorCode": 0,
[2026-01-08 06:30:34]     "pilotErrorDiag": "",
[2026-01-08 06:30:34]  *** Listing of results directory ***
[2026-01-08 06:30:34] total 441028
[2026-01-08 06:30:34] -rwx------. 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc       100 Jan  8 00:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 06:30:34] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 00:42 run_atlas
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc       105 Jan  8 00:42 job.xml
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc      6390 Jan  8 00:42 init_data.xml
[2026-01-08 06:30:34] -rw-r--r--. 2 boinc boinc 223564334 Jan  8 00:42 EVNT.47898824._000673.pool.root.1
[2026-01-08 06:30:34] -rw-r--r--. 2 boinc boinc     15847 Jan  8 00:42 start_atlas.sh
[2026-01-08 06:30:34] drwxrwx--x. 2 boinc boinc        68 Jan  8 00:42 shared
[2026-01-08 06:30:34] -rw-r--r--. 2 boinc boinc    592399 Jan  8 00:42 input.tar.gz
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc         0 Jan  8 00:42 boinc_lockfile
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc      2519 Jan  8 00:43 pandaJob.out
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc    989785 Jan  8 00:49 agis_schedconf.cvmfs.json
[2026-01-08 06:30:34] drwx------. 5 boinc boinc      4096 Jan  8 00:49 pilot3
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc 217612294 Jan  8 06:25 HITS.47898826._014354.pool.root.1
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc       531 Jan  8 06:26 boinc_task_state.xml
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc      1022 Jan  8 06:27 memory_monitor_summary.json
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc   1516240 Jan  8 06:27 agis_ddmendpoints.agis.ALL.json
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc    538787 Jan  8 06:27 log.47898826._014354.job.log.tgz.1
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc        95 Jan  8 06:29 pilot_heartbeat.json
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc      7786 Jan  8 06:29 heartbeat.json
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc      8192 Jan  8 06:30 boinc_mmap_file
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc        28 Jan  8 06:30 wrapper_checkpoint.txt
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc      4885 Jan  8 06:30 pilotlog.txt
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc   2725159 Jan  8 06:30 log.47898826._014354.job.log.1
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc       357 Jan  8 06:30 output.list
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc       620 Jan  8 06:30 runtime_log
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc   3287040 Jan  8 06:30 result.tar.gz
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc      8833 Jan  8 06:30 runtime_log.err
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc       657 Jan  8 06:30 EyKNDmhopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtpdKDmueQLCn.diag
[2026-01-08 06:30:34] -rw-r--r--. 1 boinc boinc     20674 Jan  8 06:30 stderr.txt
[2026-01-08 06:30:34] HITS file was successfully produced:
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc 217612294 Jan  8 06:25 shared/HITS.pool.root.1
[2026-01-08 06:30:34]  *** Contents of shared directory: ***
[2026-01-08 06:30:34] total 434652
[2026-01-08 06:30:34] -rw-r--r--. 2 boinc boinc 223564334 Jan  8 00:42 ATLAS.root_0
[2026-01-08 06:30:34] -rw-r--r--. 2 boinc boinc     15847 Jan  8 00:42 start_atlas.sh
[2026-01-08 06:30:34] -rw-r--r--. 2 boinc boinc    592399 Jan  8 00:42 input.tar.gz
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc 217612294 Jan  8 06:25 HITS.pool.root.1
[2026-01-08 06:30:34] -rw-------. 1 boinc boinc   3287040 Jan  8 06:30 result.tar.gz
06:30:35 (28198): run_atlas exited; CPU time 81399.072022
06:30:35 (28198): called boinc_finish(0)

</stderr_txt>
]]>

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