Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:51:24 (1860801): wrapper (7.7.26015): starting
09:51:24 (1860801): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 09:51:24] Arguments: --nthreads 4
[2026-01-11 09:51:24] Threads: 4
[2026-01-11 09:51:24] Checking for CVMFS
[2026-01-11 09:51:24] No cvmfs_config command found, will try listing directly
[2026-01-11 09:51:24] CVMFS is ok
[2026-01-11 09:51:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 09:51:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 09:51:24] Further information can be found at the LHC@home message board.
[2026-01-11 09:51:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 09:51:24] Checking for apptainer binary...
[2026-01-11 09:51:24] which: no apptainer in ((null))
[2026-01-11 09:51:24] apptainer is not installed, using version from CVMFS
[2026-01-11 09:51:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 09:51:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-01-11 09:51:24] apptainer works
[2026-01-11 09:51:24] Set ATHENA_PROC_NUMBER=4
[2026-01-11 09:51:24] Set ATHENA_CORE_NUMBER=4
[2026-01-11 09:51:24] Starting ATLAS job with PandaID=6962319845
[2026-01-11 09:51:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 14:11:20]  *** The last 200 lines of the pilot log: ***
[2026-01-11 14:11:20] 2026-01-11 13:08:17,657 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 14:11:20] 2026-01-11 13:08:18,720 | INFO     | time since job start (15403s) is within the limit (174528.0s)
[2026-01-11 14:11:20] 2026-01-11 13:08:19,196 | INFO     | monitor loop #1112: job 0:6962319845 is in state 'finished'
[2026-01-11 14:11:20] 2026-01-11 13:08:19,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:20] 2026-01-11 13:08:20,726 | INFO     | time since job start (15405s) is within the limit (174528.0s)
[2026-01-11 14:11:20] 2026-01-11 13:08:21,699 | INFO     | monitor loop #1113: job 0:6962319845 is in state 'finished'
[2026-01-11 14:11:20] 2026-01-11 13:08:21,700 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:11:20] 2026-01-11 13:08:22,729 | INFO     | time since job start (15407s) is within the limit (174528.0s)
[2026-01-11 14:11:20] 2026-01-11 13:08:22,980 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 14:11:20] 2026-01-11 13:08:22,991 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2626.8310468749996
[2026-01-11 14:11:20] 2026-01-11 13:08:23,005 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6962319845/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,006 | INFO     | extracted standard info from prmon json
[2026-01-11 14:11:20] 2026-01-11 13:08:23,006 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 14:11:20] 2026-01-11 13:08:23,006 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 14:11:20] 2026-01-11 13:08:23,007 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 14:11:20] 2026-01-11 13:08:23,007 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 14:11:20] 2026-01-11 13:08:23,012 | INFO     | fitting pss+swap vs Time
[2026-01-11 14:11:20] 2026-01-11 13:08:23,013 | INFO     | sum of square deviations: 4962187923.0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,015 | INFO     | sum of deviations: 26141744620.5
[2026-01-11 14:11:20] 2026-01-11 13:08:23,015 | INFO     | mean x: 1768129178.5
[2026-01-11 14:11:20] 2026-01-11 13:08:23,015 | INFO     | mean y: 2342760.765873016
[2026-01-11 14:11:20] 2026-01-11 13:08:23,015 | INFO     | intersect: -9312496208.987804
[2026-01-11 14:11:20] 2026-01-11 13:08:23,016 | INFO     | chi2: 1.3778354107997635
[2026-01-11 14:11:20] 2026-01-11 13:08:23,016 | INFO     | sum of square deviations: 4672638308.0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,018 | INFO     | sum of deviations: 25108247210.0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,018 | INFO     | mean x: 1768129026.0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,018 | INFO     | mean y: 2342216.376518219
[2026-01-11 14:11:20] 2026-01-11 13:08:23,019 | INFO     | intersect: -9498632983.860298
[2026-01-11 14:11:20] 2026-01-11 13:08:23,019 | INFO     | chi2: 1.3782833788488458
[2026-01-11 14:11:20] 2026-01-11 13:08:23,019 | INFO     | current chi2=1.3782833788488458 (change=-0.032512450004626596 %)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,019 | INFO     | right removable region: 246
[2026-01-11 14:11:20] 2026-01-11 13:08:23,020 | INFO     | sum of square deviations: 4672638308.0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,022 | INFO     | sum of deviations: -6646656745.999997
[2026-01-11 14:11:20] 2026-01-11 13:08:23,022 | INFO     | mean x: 1768129331.0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,022 | INFO     | mean y: 2359853.2914979756
[2026-01-11 14:11:20] 2026-01-11 13:08:23,022 | INFO     | intersect: 2517459026.6152325
[2026-01-11 14:11:20] 2026-01-11 13:08:23,022 | INFO     | chi2: 0.04674100972461695
[2026-01-11 14:11:20] 2026-01-11 13:08:23,022 | INFO     | current chi2=0.04674100972461695 (change=96.60764926215053 %)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,023 | INFO     | sum of square deviations: 4394577280.5
[2026-01-11 14:11:20] 2026-01-11 13:08:23,025 | INFO     | sum of deviations: -4019010863.999999
[2026-01-11 14:11:20] 2026-01-11 13:08:23,025 | INFO     | mean x: 1768129483.5
[2026-01-11 14:11:20] 2026-01-11 13:08:23,025 | INFO     | mean y: 2358400.785123967
[2026-01-11 14:11:20] 2026-01-11 13:08:23,025 | INFO     | intersect: 1619381188.0910048
[2026-01-11 14:11:20] 2026-01-11 13:08:23,025 | INFO     | chi2: 0.04029429181000006
[2026-01-11 14:11:20] 2026-01-11 13:08:23,026 | INFO     | current chi2=0.04029429181000006 (change=13.792423297226316 %)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,026 | INFO     | left removable region: 20
[2026-01-11 14:11:20] 2026-01-11 13:08:23,026 | INFO     | sum of square deviations: 3579276412.5
[2026-01-11 14:11:20] 2026-01-11 13:08:23,028 | INFO     | sum of deviations: 4616568449.999999
[2026-01-11 14:11:20] 2026-01-11 13:08:23,028 | INFO     | mean x: 1768129605.5
[2026-01-11 14:11:20] 2026-01-11 13:08:23,028 | INFO     | mean y: 2352502.663716814
[2026-01-11 14:11:20] 2026-01-11 13:08:23,028 | INFO     | intersect: -2278189822.5267787
[2026-01-11 14:11:20] 2026-01-11 13:08:23,028 | INFO     | chi2: 0.00972463302989497
[2026-01-11 14:11:20] 2026-01-11 13:08:23,029 | INFO     | current memory leak: 1.29 B/s (using 226 data points, chi2=0.01)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,029 | INFO     | could have reported an average CPU frequency of 2493 MHz (12 samples)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,029 | INFO     | ..............................
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . Timing measurements:
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . get job = 0 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . initial setup = 1 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . payload setup = 6 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . stage-in = 0 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . payload execution = 15373 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . stage-out = 1 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | . log creation = 0 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,030 | INFO     | ..............................
[2026-01-11 14:11:20] 2026-01-11 13:08:23,136 | INFO     | 
[2026-01-11 14:11:20] 2026-01-11 13:08:23,136 | INFO     | job summary report
[2026-01-11 14:11:20] 2026-01-11 13:08:23,136 | INFO     | --------------------------------------------------
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | PanDA job id: 6962319845
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | task id: 47898826
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | errors: (none)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | pilot state: finished 
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | transexitcode: 0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | exeerrorcode: 0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | exeerrordiag: 
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | exitcode: 0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | exitmsg: OK
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | cpuconsumptiontime: 59869 s
[2026-01-11 14:11:20] 2026-01-11 13:08:23,137 | INFO     | nevents: 400
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | neventsw: 0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | pid: 1873795
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | pgrp: 1873795
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | corecount: 4
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | event service: False
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 15384: 2315486, 15386: 2324562, 15391: 2324700}
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | --------------------------------------------------
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | 
[2026-01-11 14:11:20] 2026-01-11 13:08:23,138 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2026-01-11 14:11:20] 2026-01-11 13:08:23,160 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,160 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,160 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,162 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,162 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 14:11:20] 2026-01-11 13:08:23,162 | INFO     | job 6962319845 has completed (purged errors)
[2026-01-11 14:11:20] 2026-01-11 13:08:23,162 | INFO     | overall cleanup function is called
[2026-01-11 14:11:20] 2026-01-11 13:08:24,170 | INFO     | --- collectZombieJob: --- 10, [1873795]
[2026-01-11 14:11:20] 2026-01-11 13:08:24,170 | INFO     | zombie collector waiting for pid 1873795
[2026-01-11 14:11:20] 2026-01-11 13:08:24,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 14:11:20] 2026-01-11 13:08:24,171 | INFO     | collected zombie processes
[2026-01-11 14:11:20] 2026-01-11 13:08:24,171 | INFO     | will attempt to kill all subprocesses of pid=1873795
[2026-01-11 14:11:20] 2026-01-11 13:08:24,523 | INFO     | process IDs to be killed: [1873795] (in reverse order)
[2026-01-11 14:11:20] 2026-01-11 13:08:24,626 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 14:11:20] 2026-01-11 13:08:24,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 14:11:20] 2026-01-11 13:08:24,638 | INFO     | did not find any defunct processes belonging to 1873795
[2026-01-11 14:11:20] 2026-01-11 13:08:24,651 | INFO     | did not find any defunct processes belonging to 1873795
[2026-01-11 14:11:20] 2026-01-11 13:08:24,651 | INFO     | ready for new job
[2026-01-11 14:11:20] 2026-01-11 13:08:24,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 14:11:20] 2026-01-11 13:08:24,654 | INFO     | ***************************************
[2026-01-11 14:11:20] 2026-01-11 13:08:24,654 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 14:11:20] 2026-01-11 13:08:24,654 | INFO     | ***************************************
[2026-01-11 14:11:20] 2026-01-11 13:08:24,654 | INFO     | 
[2026-01-11 14:11:20] 2026-01-11 13:08:24,658 | INFO     | architecture information:
[2026-01-11 14:11:20] 2026-01-11 13:08:24,658 | INFO     | executing command: cat /etc/os-release
[2026-01-11 14:11:20] 2026-01-11 13:08:24,674 | INFO     | cat /etc/os-release:
[2026-01-11 14:11:20] NAME="CentOS Linux"
[2026-01-11 14:11:20] VERSION="7 (Core)"
[2026-01-11 14:11:20] ID="centos"
[2026-01-11 14:11:20] ID_LIKE="rhel fedora"
[2026-01-11 14:11:20] VERSION_ID="7"
[2026-01-11 14:11:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 14:11:20] ANSI_COLOR="0;31"
[2026-01-11 14:11:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 14:11:20] HOME_URL="https://www.centos.org/"
[2026-01-11 14:11:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 14:11:20] 
[2026-01-11 14:11:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 14:11:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 14:11:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 14:11:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 14:11:20] 
[2026-01-11 14:11:20] 2026-01-11 13:08:24,675 | INFO     | ***************************************
[2026-01-11 14:11:20] 2026-01-11 13:08:25,176 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2026-01-11 14:11:20] 2026-01-11 13:08:25,193 | INFO     | sufficient remaining disk space (701454352384 B)
[2026-01-11 14:11:20] 2026-01-11 13:08:25,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 14:11:20] 2026-01-11 13:08:25,193 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 14:11:20] 2026-01-11 13:08:25,193 | INFO     | update_server=False
[2026-01-11 14:11:20] 2026-01-11 13:08:25,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 14:11:20] 2026-01-11 13:08:25,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 14:11:20] 2026-01-11 13:08:25,207 | INFO     | aborting loop
[2026-01-11 14:11:20] 2026-01-11 13:08:25,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 14:11:20] 2026-01-11 13:08:25,647 | INFO     | all payload control threads have been joined
[2026-01-11 14:11:20] 2026-01-11 13:08:26,199 | INFO     | [job] retrieve thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,206 | INFO     | all data control threads have been joined
[2026-01-11 14:11:20] 2026-01-11 13:08:26,212 | INFO     | [job] job monitor thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,224 | INFO     | [payload] validate_post thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,266 | INFO     | [job] validate thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,286 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,349 | INFO     | all job control threads have been joined
[2026-01-11 14:11:20] 2026-01-11 13:08:26,384 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,637 | INFO     | [payload] failed_post thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:26,652 | INFO     | [payload] control thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:27,001 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:27,063 | INFO     | [data] copytool_in thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:27,211 | INFO     | [data] control thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:27,354 | INFO     | [job] control thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:27,449 | INFO     | [data] copytool_out thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:28,035 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 14:11:20] 2026-01-11 13:08:28,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 14:11:20] 2026-01-11 13:08:29,151 | INFO     | [job] queue monitor thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:32,041 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:35,717 | INFO     | job.realtimelogging is not enabled
[2026-01-11 14:11:20] 2026-01-11 13:08:36,723 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 14:11:20] 2026-01-11 13:08:56,388 | INFO     | PID=1864609 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-11 14:11:20] 2026-01-11 13:08:56,388 | INFO     | .. there are 2 such processes running
[2026-01-11 14:11:20] 2026-01-11 13:08:56,388 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 14:11:20] 2026-01-11 13:08:56,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 14:11:20] 2026-01-11 13:08:56,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 14:11:20] 2026-01-11 13:08:59,998 | INFO     | [monitor] cgroup control has ended
[2026-01-11 14:11:20] 2026-01-11 13:09:01,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23369977632576)>', '<ExcThread(monitor, started 23369732802304)>']
[2026-01-11 14:11:20] 2026-01-11 13:09:02,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 14:11:20] 2026-01-11 13:09:02,418 | INFO     | [monitor] control thread has ended
[2026-01-11 14:11:20] 2026-01-11 13:09:06,928 | INFO     | all workflow threads have been joined
[2026-01-11 14:11:20] 2026-01-11 13:09:06,928 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 14:11:20] 2026-01-11 13:09:06,928 | INFO     | traces error code: 0
[2026-01-11 14:11:20] 2026-01-11 13:09:06,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 14:11:20] 2026-01-11 13:09:07,076 [wrapper] ==== pilot stdout END ====
[2026-01-11 14:11:20] 2026-01-11 13:09:07,079 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 14:11:20] 2026-01-11 13:09:07,083 [wrapper] pilotpid: 1864609
[2026-01-11 14:11:20] 2026-01-11 13:09:07,087 [wrapper] Pilot exit status: 0
[2026-01-11 14:11:20] 2026-01-11 13:09:07,097 [wrapper] pandaids: 6962319845
[2026-01-11 14:11:20] 2026-01-11 13:09:07,170 [wrapper] cleanup supervisor_pilot 2081339 1864610
[2026-01-11 14:11:20] 2026-01-11 13:09:07,173 [wrapper] Test setup, not cleaning
[2026-01-11 14:11:20] 2026-01-11 13:09:07,177 [wrapper] apfmon messages muted
[2026-01-11 14:11:20] 2026-01-11 13:09:07,180 [wrapper] ==== wrapper stdout END ====
[2026-01-11 14:11:20] 2026-01-11 13:09:07,183 [wrapper] ==== wrapper stderr END ====
[2026-01-11 14:11:20]  *** Error codes and diagnostics ***
[2026-01-11 14:11:20]     "exeErrorCode": 0,
[2026-01-11 14:11:20]     "exeErrorDiag": "",
[2026-01-11 14:11:20]     "pilotErrorCode": 0,
[2026-01-11 14:11:20]     "pilotErrorDiag": "",
[2026-01-11 14:11:20]  *** Listing of results directory ***
[2026-01-11 14:11:20] total 445552
[2026-01-11 14:11:20] -rwx------ 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:04 queuedata.json
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc       100 Jan 11 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 14:11:20] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 09:51 run_atlas
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc       105 Jan 11 09:51 job.xml
[2026-01-11 14:11:20] -rw-r--r-- 2 boinc boinc 222648026 Jan 11 09:51 EVNT.47898824._000594.pool.root.1
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc      6636 Jan 11 09:51 init_data.xml
[2026-01-11 14:11:20] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:51 start_atlas.sh
[2026-01-11 14:11:20] drwxrwx--x 2 boinc boinc      4096 Jan 11 09:51 shared
[2026-01-11 14:11:20] -rw-r--r-- 2 boinc boinc    592391 Jan 11 09:51 input.tar.gz
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:51 boinc_lockfile
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc      2519 Jan 11 09:51 pandaJob.out
[2026-01-11 14:11:20] -rw------- 1 boinc boinc    989548 Jan 11 09:51 agis_schedconf.cvmfs.json
[2026-01-11 14:11:20] drwx------ 5 boinc boinc      4096 Jan 11 09:51 pilot3
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc       528 Jan 11 14:07 boinc_task_state.xml
[2026-01-11 14:11:20] -rw------- 1 boinc boinc 224516950 Jan 11 14:07 HITS.47898826._013696.pool.root.1
[2026-01-11 14:11:20] -rw------- 1 boinc boinc      1049 Jan 11 14:08 memory_monitor_summary.json
[2026-01-11 14:11:20] -rw------- 1 boinc boinc   1516240 Jan 11 14:08 agis_ddmendpoints.agis.ALL.json
[2026-01-11 14:11:20] -rw------- 1 boinc boinc    414028 Jan 11 14:08 log.47898826._013696.job.log.tgz.1
[2026-01-11 14:11:20] -rw------- 1 boinc boinc        95 Jan 11 14:08 pilot_heartbeat.json
[2026-01-11 14:11:20] -rw------- 1 boinc boinc      7830 Jan 11 14:08 heartbeat.json
[2026-01-11 14:11:20] -rw------- 1 boinc boinc      4906 Jan 11 14:09 pilotlog.txt
[2026-01-11 14:11:20] -rw------- 1 boinc boinc   2168890 Jan 11 14:09 log.47898826._013696.job.log.1
[2026-01-11 14:11:20] -rw------- 1 boinc boinc       357 Jan 11 14:09 output.list
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc       620 Jan 11 14:09 runtime_log
[2026-01-11 14:11:20] -rw------- 1 boinc boinc   2600960 Jan 11 14:09 result.tar.gz
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc      9206 Jan 11 14:09 runtime_log.err
[2026-01-11 14:11:20] -rw------- 1 boinc boinc       665 Jan 11 14:09 U8TMDm7npx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0siKDmI4Hi0m.diag
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc        26 Jan 11 14:11 wrapper_checkpoint.txt
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc      8192 Jan 11 14:11 boinc_mmap_file
[2026-01-11 14:11:20] -rw-r--r-- 1 boinc boinc     21171 Jan 11 14:11 stderr.txt
[2026-01-11 14:11:20] HITS file was successfully produced:
[2026-01-11 14:11:20] -rw------- 1 boinc boinc 224516950 Jan 11 14:07 shared/HITS.pool.root.1
[2026-01-11 14:11:20]  *** Contents of shared directory: ***
[2026-01-11 14:11:20] total 439832
[2026-01-11 14:11:20] -rw-r--r-- 2 boinc boinc 222648026 Jan 11 09:51 ATLAS.root_0
[2026-01-11 14:11:20] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:51 start_atlas.sh
[2026-01-11 14:11:20] -rw-r--r-- 2 boinc boinc    592391 Jan 11 09:51 input.tar.gz
[2026-01-11 14:11:20] -rw------- 1 boinc boinc 224516950 Jan 11 14:07 HITS.pool.root.1
[2026-01-11 14:11:20] -rw------- 1 boinc boinc   2600960 Jan 11 14:09 result.tar.gz
14:11:22 (1860801): run_atlas exited; CPU time 60552.255457
14:11:22 (1860801): called boinc_finish(0)

</stderr_txt>
]]>

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