Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:52:22 (3711972): wrapper (7.7.26015): starting
07:52:22 (3711972): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 07:52:22] Arguments: --nthreads 2
[2026-01-08 07:52:22] Threads: 2
[2026-01-08 07:52:22] Checking for CVMFS
[2026-01-08 07:52:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 07:52:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 07:52:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 07:52:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 07:52:22] 2.9.2.0 3553530 856 52772 154894 0 57 18703595 36864000 0 130560 0 414518 99.985 31512 12539 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 07:52:22] CVMFS is ok
[2026-01-08 07:52:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 07:52:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 07:52:22] Further information can be found at the LHC@home message board.
[2026-01-08 07:52:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:52:22] Checking for apptainer binary...
[2026-01-08 07:52:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 07:52:22] Running /usr/bin/apptainer --version
[2026-01-08 07:52:22] apptainer version 1.4.1-1.1
[2026-01-08 07:52:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:52:22] madmaxA277a
[2026-01-08 07:52:22] apptainer works
[2026-01-08 07:52:22] Set ATHENA_PROC_NUMBER=2
[2026-01-08 07:52:22] Set ATHENA_CORE_NUMBER=2
[2026-01-08 07:52:22] Starting ATLAS job with PandaID=6962319851
[2026-01-08 07:52:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 10:50:55]  *** The last 200 lines of the pilot log: ***
[2026-01-08 10:50:55] 2026-01-08 09:50:13,027 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 10:50:55] 2026-01-08 09:50:13,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 10:50:55] 2026-01-08 09:50:13,028 | INFO     | did not find any defunct processes belonging to 3722106
[2026-01-08 10:50:55] 2026-01-08 09:50:13,029 | INFO     | did not find any defunct processes belonging to 3722106
[2026-01-08 10:50:55] 2026-01-08 09:50:13,029 | INFO     | ready for new job
[2026-01-08 10:50:55] 2026-01-08 09:50:13,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 10:50:55] 2026-01-08 09:50:13,030 | INFO     | ***************************************
[2026-01-08 10:50:55] 2026-01-08 09:50:13,030 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 10:50:55] 2026-01-08 09:50:13,030 | INFO     | ***************************************
[2026-01-08 10:50:55] 2026-01-08 09:50:13,030 | INFO     | 
[2026-01-08 10:50:55] 2026-01-08 09:50:13,030 | INFO     | architecture information:
[2026-01-08 10:50:55] 2026-01-08 09:50:13,030 | INFO     | executing command: cat /etc/os-release
[2026-01-08 10:50:55] 2026-01-08 09:50:13,037 | INFO     | cat /etc/os-release:
[2026-01-08 10:50:55] NAME="CentOS Linux"
[2026-01-08 10:50:55] VERSION="7 (Core)"
[2026-01-08 10:50:55] ID="centos"
[2026-01-08 10:50:55] ID_LIKE="rhel fedora"
[2026-01-08 10:50:55] VERSION_ID="7"
[2026-01-08 10:50:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 10:50:55] ANSI_COLOR="0;31"
[2026-01-08 10:50:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 10:50:55] HOME_URL="https://www.centos.org/"
[2026-01-08 10:50:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 10:50:55] 
[2026-01-08 10:50:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 10:50:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 10:50:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 10:50:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 10:50:55] 
[2026-01-08 10:50:55] 2026-01-08 09:50:13,038 | INFO     | ***************************************
[2026-01-08 10:50:55] 2026-01-08 09:50:13,541 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | INFO     | sufficient remaining disk space (500653096960 B)
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | INFO     | update_server=False
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 10:50:55] 2026-01-08 09:50:13,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 10:50:55] 2026-01-08 09:50:13,702 | INFO     | all data control threads have been joined
[2026-01-08 10:50:55] 2026-01-08 09:50:14,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 10:50:55] 2026-01-08 09:50:14,070 | INFO     | aborting loop
[2026-01-08 10:50:55] 2026-01-08 09:50:14,288 | INFO     | all payload control threads have been joined
[2026-01-08 10:50:55] 2026-01-08 09:50:14,558 | INFO     | [job] retrieve thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:14,558 | INFO     | [job] queue monitor thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:14,624 | INFO     | all job control threads have been joined
[2026-01-08 10:50:55] 2026-01-08 09:50:14,708 | INFO     | [data] control thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:14,784 | INFO     | [payload] failed_post thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,076 | INFO     | [job] job monitor thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,119 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,155 | INFO     | [job] validate thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,174 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,198 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,294 | INFO     | [payload] control thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,558 | INFO     | [data] copytool_out thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,630 | INFO     | [job] control thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:15,958 | INFO     | [payload] validate_post thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:16,060 | INFO     | [data] copytool_in thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:17,559 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:24,036 | INFO     | job.realtimelogging is not enabled
[2026-01-08 10:50:55] 2026-01-08 09:50:25,042 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 10:50:55] 2026-01-08 09:50:43,120 | INFO     | PID=3715682 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 10:50:55] 2026-01-08 09:50:43,120 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 10:50:55] 2026-01-08 09:50:43,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 10:50:55] 2026-01-08 09:50:43,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 10:50:55] 2026-01-08 09:50:49,226 | INFO     | [monitor] cgroup control has ended
[2026-01-08 10:50:55] 2026-01-08 09:50:50,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139846408189760)>', '<ExcThread(monitor, started 139845896738560)>']
[2026-01-08 10:50:55] 2026-01-08 09:50:51,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 10:50:55] 2026-01-08 09:50:51,164 | INFO     | [monitor] control thread has ended
[2026-01-08 10:50:55] 2026-01-08 09:50:55,284 | INFO     | all workflow threads have been joined
[2026-01-08 10:50:55] 2026-01-08 09:50:55,285 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 10:50:55] 2026-01-08 09:50:55,285 | INFO     | traces error code: 0
[2026-01-08 10:50:55] 2026-01-08 09:50:55,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 10:50:55] 2026-01-08 09:50:55,327 [wrapper] ==== pilot stdout END ====
[2026-01-08 10:50:55] 2026-01-08 09:50:55,330 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 10:50:55] 2026-01-08 09:50:55,332 [wrapper] pilotpid: 3715682
[2026-01-08 10:50:55] 2026-01-08 09:50:55,334 [wrapper] Pilot exit status: 0
[2026-01-08 10:50:55] 2026-01-08 09:50:55,339 [wrapper] pandaids: 6962319851
[2026-01-08 10:50:55] 2026-01-08 09:50:55,352 [wrapper] cleanup supervisor_pilot 3741121 3715683
[2026-01-08 10:50:55] 2026-01-08 09:50:55,354 [wrapper] Test setup, not cleaning
[2026-01-08 10:50:55] 2026-01-08 09:50:55,356 [wrapper] apfmon messages muted
[2026-01-08 10:50:55] 2026-01-08 09:50:55,358 [wrapper] ==== wrapper stdout END ====
[2026-01-08 10:50:55] 2026-01-08 09:50:55,360 [wrapper] ==== wrapper stderr END ====
[2026-01-08 10:50:55]  *** Error codes and diagnostics ***
[2026-01-08 10:50:55]     "exeErrorCode": 0,
[2026-01-08 10:50:55]     "exeErrorDiag": "",
[2026-01-08 10:50:55]     "pilotErrorCode": 0,
[2026-01-08 10:50:55]     "pilotErrorDiag": "",
[2026-01-08 10:50:55]  *** Listing of results directory ***
[2026-01-08 10:50:55] total 441024
[2026-01-08 10:50:55] -rwx------ 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:04 queuedata.json
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc       100 Jan  8 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 10:50:55] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 07:52 run_atlas
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc       105 Jan  8 07:52 job.xml
[2026-01-08 10:50:55] -rw-r--r-- 2 boinc boinc 222648026 Jan  8 07:52 EVNT.47898824._000594.pool.root.1
[2026-01-08 10:50:55] -rw-r--r-- 2 boinc boinc    592393 Jan  8 07:52 input.tar.gz
[2026-01-08 10:50:55] -rw-r--r-- 2 boinc boinc     15847 Jan  8 07:52 start_atlas.sh
[2026-01-08 10:50:55] drwxrwx--x 2 boinc boinc      4096 Jan  8 07:52 shared
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc         0 Jan  8 07:52 boinc_setup_complete
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc      6209 Jan  8 07:52 init_data.xml
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc         0 Jan  8 07:52 boinc_lockfile
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc      2519 Jan  8 07:52 pandaJob.out
[2026-01-08 10:50:55] -rw------- 1 boinc boinc    989827 Jan  8 07:52 agis_schedconf.cvmfs.json
[2026-01-08 10:50:55] -rw------- 1 boinc boinc   1516240 Jan  8 07:52 agis_ddmendpoints.agis.ALL.json
[2026-01-08 10:50:55] drwx------ 5 boinc boinc      4096 Jan  8 07:52 pilot3
[2026-01-08 10:50:55] -rw------- 1 boinc boinc 221389679 Jan  8 10:49 HITS.47898826._013702.pool.root.1
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc       530 Jan  8 10:49 boinc_task_state.xml
[2026-01-08 10:50:55] -rw------- 1 boinc boinc      1017 Jan  8 10:49 memory_monitor_summary.json
[2026-01-08 10:50:55] -rw------- 1 boinc boinc    319194 Jan  8 10:50 log.47898826._013702.job.log.tgz.1
[2026-01-08 10:50:55] -rw------- 1 boinc boinc      7765 Jan  8 10:50 heartbeat.json
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc      8192 Jan  8 10:50 boinc_mmap_file
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc        28 Jan  8 10:50 wrapper_checkpoint.txt
[2026-01-08 10:50:55] -rw------- 1 boinc boinc        95 Jan  8 10:50 pilot_heartbeat.json
[2026-01-08 10:50:55] -rw------- 1 boinc boinc      4824 Jan  8 10:50 pilotlog.txt
[2026-01-08 10:50:55] -rw------- 1 boinc boinc   1515813 Jan  8 10:50 log.47898826._013702.job.log.1
[2026-01-08 10:50:55] -rw------- 1 boinc boinc       357 Jan  8 10:50 output.list
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc       620 Jan  8 10:50 runtime_log
[2026-01-08 10:50:55] -rw------- 1 boinc boinc   1853440 Jan  8 10:50 result.tar.gz
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc      8923 Jan  8 10:50 runtime_log.err
[2026-01-08 10:50:55] -rw------- 1 boinc boinc       666 Jan  8 10:50 MVaMDm7npx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5siKDmcYRj1n.diag
[2026-01-08 10:50:55] -rw-r--r-- 1 boinc boinc     10067 Jan  8 10:50 stderr.txt
[2026-01-08 10:50:55] HITS file was successfully produced:
[2026-01-08 10:50:55] -rw------- 1 boinc boinc 221389679 Jan  8 10:49 shared/HITS.pool.root.1
[2026-01-08 10:50:55]  *** Contents of shared directory: ***
[2026-01-08 10:50:55] total 436048
[2026-01-08 10:50:55] -rw-r--r-- 2 boinc boinc 222648026 Jan  8 07:52 ATLAS.root_0
[2026-01-08 10:50:55] -rw-r--r-- 2 boinc boinc    592393 Jan  8 07:52 input.tar.gz
[2026-01-08 10:50:55] -rw-r--r-- 2 boinc boinc     15847 Jan  8 07:52 start_atlas.sh
[2026-01-08 10:50:55] -rw------- 1 boinc boinc 221389679 Jan  8 10:49 HITS.pool.root.1
[2026-01-08 10:50:55] -rw------- 1 boinc boinc   1853440 Jan  8 10:50 result.tar.gz
10:50:56 (3711972): run_atlas exited; CPU time 20840.151281
10:50:56 (3711972): called boinc_finish(0)

</stderr_txt>
]]>

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