Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:18:16 (251852): wrapper (7.7.26015): starting
22:18:16 (251852): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 22:18:16] Arguments: --nthreads 8
[2026-01-07 22:18:16] Threads: 8
[2026-01-07 22:18:16] Checking for CVMFS
[2026-01-07 22:18:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 22:18:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 22:18:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 22:18:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 22:18:20] 2.13.3.0 9278 91375 368212 154889 2 240 21588264 32935937 18959 16776704 0 442676527 99.749 302353031 33503 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 22:18:20] CVMFS is ok
[2026-01-07 22:18:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 22:18:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 22:18:20] Further information can be found at the LHC@home message board.
[2026-01-07 22:18:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 22:18:20] Checking for apptainer binary...
[2026-01-07 22:18:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 22:18:20] Running /usr/bin/apptainer --version
[2026-01-07 22:18:20] apptainer version 1.4.5-2.el9
[2026-01-07 22:18:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 22:18:21] c-4-40.aglt2.org
[2026-01-07 22:18:21] apptainer works
[2026-01-07 22:18:21] Set ATHENA_PROC_NUMBER=8
[2026-01-07 22:18:21] Set ATHENA_CORE_NUMBER=8
[2026-01-07 22:18:22] Starting ATLAS job with PandaID=6962319953
[2026-01-07 22:18:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 06:30:17]  *** The last 200 lines of the pilot log: ***
[2026-01-08 06:30:17] 2026-01-08 11:29:30,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 06:30:17] 2026-01-08 11:29:32,111 | INFO     | time since job start (29416s) is within the limit (174528.0s)
[2026-01-08 06:30:17] 2026-01-08 11:29:33,476 | INFO     | monitor loop #1759: job 0:6962319953 is in state 'finished'
[2026-01-08 06:30:17] 2026-01-08 11:29:33,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 06:30:17] 2026-01-08 11:29:34,118 | INFO     | time since job start (29418s) is within the limit (174528.0s)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,492 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 06:30:17] 2026-01-08 11:29:35,642 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8716999999997
[2026-01-08 06:30:17] 2026-01-08 11:29:35,656 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962319953/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,730 | INFO     | extracted standard info from prmon json
[2026-01-08 06:30:17] 2026-01-08 11:29:35,730 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 06:30:17] 2026-01-08 11:29:35,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 06:30:17] 2026-01-08 11:29:35,741 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 06:30:17] 2026-01-08 11:29:35,741 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 06:30:17] 2026-01-08 11:29:35,758 | INFO     | fitting pss+swap vs Time
[2026-01-08 06:30:17] 2026-01-08 11:29:35,759 | INFO     | sum of square deviations: 34292469311.89801
[2026-01-08 06:30:17] 2026-01-08 11:29:35,765 | INFO     | sum of deviations: 49761929005.102005
[2026-01-08 06:30:17] 2026-01-08 11:29:35,766 | INFO     | mean x: 1767857100.9520833
[2026-01-08 06:30:17] 2026-01-08 11:29:35,766 | INFO     | mean y: 2521468.0479166666
[2026-01-08 06:30:17] 2026-01-08 11:29:35,766 | INFO     | intersect: -2562822507.2901473
[2026-01-08 06:30:17] 2026-01-08 11:29:35,767 | INFO     | chi2: 3.992989229927482
[2026-01-08 06:30:17] 2026-01-08 11:29:35,767 | INFO     | sum of square deviations: 33231984005.776924
[2026-01-08 06:30:17] 2026-01-08 11:29:35,773 | INFO     | sum of deviations: 79748485950.14313
[2026-01-08 06:30:17] 2026-01-08 11:29:35,773 | INFO     | mean x: 1767856948.454737
[2026-01-08 06:30:17] 2026-01-08 11:29:35,774 | INFO     | mean y: 2525743.425263158
[2026-01-08 06:30:17] 2026-01-08 11:29:35,774 | INFO     | intersect: -4239890688.6239753
[2026-01-08 06:30:17] 2026-01-08 11:29:35,774 | INFO     | chi2: 3.3212745106768984
[2026-01-08 06:30:17] 2026-01-08 11:29:35,775 | INFO     | current chi2=3.3212745106768984 (change=16.82235239244016 %)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,775 | INFO     | right removable region: 474
[2026-01-08 06:30:17] 2026-01-08 11:29:35,775 | INFO     | sum of square deviations: 33231909951.77691
[2026-01-08 06:30:17] 2026-01-08 11:29:35,781 | INFO     | sum of deviations: -75841381461.84209
[2026-01-08 06:30:17] 2026-01-08 11:29:35,782 | INFO     | mean x: 1767857253.454737
[2026-01-08 06:30:17] 2026-01-08 11:29:35,782 | INFO     | mean y: 2539502.263157895
[2026-01-08 06:30:17] 2026-01-08 11:29:35,782 | INFO     | intersect: 4037117608.7850213
[2026-01-08 06:30:17] 2026-01-08 11:29:35,783 | INFO     | chi2: 1.4164790275763417
[2026-01-08 06:30:17] 2026-01-08 11:29:35,783 | INFO     | current chi2=1.4164790275763417 (change=64.52584903160215 %)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,784 | INFO     | sum of square deviations: 32193560172.774506
[2026-01-08 06:30:17] 2026-01-08 11:29:35,791 | INFO     | sum of deviations: -111055936664.50204
[2026-01-08 06:30:17] 2026-01-08 11:29:35,791 | INFO     | mean x: 1767857405.9489362
[2026-01-08 06:30:17] 2026-01-08 11:29:35,792 | INFO     | mean y: 2544661.895744681
[2026-01-08 06:30:17] 2026-01-08 11:29:35,792 | INFO     | intersect: 6101002212.2032585
[2026-01-08 06:30:17] 2026-01-08 11:29:35,792 | INFO     | chi2: 1.1625455566428304
[2026-01-08 06:30:17] 2026-01-08 11:29:35,793 | INFO     | current chi2=1.1625455566428304 (change=17.927090058509563 %)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,793 | INFO     | left removable region: 20
[2026-01-08 06:30:17] 2026-01-08 11:29:35,793 | INFO     | sum of square deviations: 29016408594.934002
[2026-01-08 06:30:17] 2026-01-08 11:29:35,811 | INFO     | sum of deviations: -86813384059.75334
[2026-01-08 06:30:17] 2026-01-08 11:29:35,811 | INFO     | mean x: 1767857527.951542
[2026-01-08 06:30:17] 2026-01-08 11:29:35,811 | INFO     | mean y: 2550371.1475770925
[2026-01-08 06:30:17] 2026-01-08 11:29:35,811 | INFO     | intersect: 5291754031.030504
[2026-01-08 06:30:17] 2026-01-08 11:29:35,812 | INFO     | chi2: 0.4483726949951924
[2026-01-08 06:30:17] 2026-01-08 11:29:35,812 | INFO     | current memory leak: -2.99 B/s (using 454 data points, chi2=0.45)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,813 | INFO     | could have reported an average CPU frequency of 2599 MHz (20 samples)
[2026-01-08 06:30:17] 2026-01-08 11:29:35,813 | INFO     | ..............................
[2026-01-08 06:30:17] 2026-01-08 11:29:35,814 | INFO     | . Timing measurements:
[2026-01-08 06:30:17] 2026-01-08 11:29:35,814 | INFO     | . get job = 0 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,814 | INFO     | . initial setup = 5 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,842 | INFO     | . payload setup = 41 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,843 | INFO     | . stage-in = 0 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,843 | INFO     | . payload execution = 29278 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,843 | INFO     | . stage-out = 5 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,843 | INFO     | . log creation = 1 s
[2026-01-08 06:30:17] 2026-01-08 11:29:35,843 | INFO     | ..............................
[2026-01-08 06:30:17] 2026-01-08 11:29:37,208 | INFO     | 
[2026-01-08 06:30:17] 2026-01-08 11:29:37,220 | INFO     | job summary report
[2026-01-08 06:30:17] 2026-01-08 11:29:37,220 | INFO     | --------------------------------------------------
[2026-01-08 06:30:17] 2026-01-08 11:29:37,220 | INFO     | PanDA job id: 6962319953
[2026-01-08 06:30:17] 2026-01-08 11:29:37,220 | INFO     | task id: 47898826
[2026-01-08 06:30:17] 2026-01-08 11:29:37,220 | INFO     | errors: (none)
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | pilot state: finished 
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | transexitcode: 0
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | exeerrorcode: 0
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | exeerrordiag: 
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | exitcode: 0
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | exitmsg: OK
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | cpuconsumptiontime: 69267 s
[2026-01-08 06:30:17] 2026-01-08 11:29:37,221 | INFO     | nevents: 400
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | neventsw: 0
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | pid: 268435
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | pgrp: 268435
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | corecount: 8
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | event service: False
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | sizes: {0: 2283798, 1: 2283997, 12: 2283997, 24: 2284025, 25: 2284315, 35: 2284343, 29324: 2322030, 29331: 2331028, 29332: 2331084, 29361: 2331278}
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | --------------------------------------------------
[2026-01-08 06:30:17] 2026-01-08 11:29:37,222 | INFO     | 
[2026-01-08 06:30:17] 2026-01-08 11:29:37,223 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 06:30:17] 2026-01-08 11:29:37,415 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,416 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,416 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,420 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,422 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 06:30:17] 2026-01-08 11:29:37,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,423 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 06:30:17] 2026-01-08 11:29:37,423 | INFO     | job 6962319953 has completed (purged errors)
[2026-01-08 06:30:17] 2026-01-08 11:29:37,423 | INFO     | overall cleanup function is called
[2026-01-08 06:30:17] 2026-01-08 11:29:37,914 | INFO     | PID=258749 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 06:30:17] 2026-01-08 11:29:37,914 | INFO     | .. there are 26 such processes running
[2026-01-08 06:30:17] 2026-01-08 11:29:38,540 | INFO     | --- collectZombieJob: --- 10, [268435]
[2026-01-08 06:30:17] 2026-01-08 11:29:38,540 | INFO     | zombie collector waiting for pid 268435
[2026-01-08 06:30:17] 2026-01-08 11:29:38,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 06:30:17] 2026-01-08 11:29:38,550 | INFO     | collected zombie processes
[2026-01-08 06:30:17] 2026-01-08 11:29:38,551 | INFO     | will attempt to kill all subprocesses of pid=268435
[2026-01-08 06:30:17] 2026-01-08 11:29:39,575 | INFO     | process IDs to be killed: [268435] (in reverse order)
[2026-01-08 06:30:17] 2026-01-08 11:29:40,010 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 06:30:17] 2026-01-08 11:29:40,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 06:30:17] 2026-01-08 11:29:40,070 | INFO     | did not find any defunct processes belonging to 268435
[2026-01-08 06:30:17] 2026-01-08 11:29:40,110 | INFO     | did not find any defunct processes belonging to 268435
[2026-01-08 06:30:17] 2026-01-08 11:29:40,110 | INFO     | ready for new job
[2026-01-08 06:30:17] 2026-01-08 11:29:40,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 06:30:17] 2026-01-08 11:29:40,118 | INFO     | ***************************************
[2026-01-08 06:30:17] 2026-01-08 11:29:40,118 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 06:30:17] 2026-01-08 11:29:40,118 | INFO     | ***************************************
[2026-01-08 06:30:17] 2026-01-08 11:29:40,118 | INFO     | 
[2026-01-08 06:30:17] 2026-01-08 11:29:40,209 | INFO     | architecture information:
[2026-01-08 06:30:17] 2026-01-08 11:29:40,246 | INFO     | executing command: cat /etc/os-release
[2026-01-08 06:30:17] 2026-01-08 11:29:40,342 | INFO     | cat /etc/os-release:
[2026-01-08 06:30:17] NAME="CentOS Linux"
[2026-01-08 06:30:17] VERSION="7 (Core)"
[2026-01-08 06:30:17] ID="centos"
[2026-01-08 06:30:17] ID_LIKE="rhel fedora"
[2026-01-08 06:30:17] VERSION_ID="7"
[2026-01-08 06:30:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 06:30:17] ANSI_COLOR="0;31"
[2026-01-08 06:30:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 06:30:17] HOME_URL="https://www.centos.org/"
[2026-01-08 06:30:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 06:30:17] 
[2026-01-08 06:30:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 06:30:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 06:30:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 06:30:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 06:30:17] 
[2026-01-08 06:30:17] 2026-01-08 11:29:40,342 | INFO     | ***************************************
[2026-01-08 06:30:17] 2026-01-08 11:29:40,846 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 06:30:17] 2026-01-08 11:29:40,947 | INFO     | sufficient remaining disk space (75758567424 B)
[2026-01-08 06:30:17] 2026-01-08 11:29:40,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 06:30:17] 2026-01-08 11:29:40,947 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 06:30:17] 2026-01-08 11:29:40,947 | INFO     | update_server=False
[2026-01-08 06:30:17] 2026-01-08 11:29:40,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 06:30:17] 2026-01-08 11:29:40,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 06:30:17] 2026-01-08 11:29:40,995 | INFO     | all data control threads have been joined
[2026-01-08 06:30:17] 2026-01-08 11:29:41,222 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 06:30:17] 2026-01-08 11:29:41,222 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 06:30:17] 2026-01-08 11:29:41,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:30:17] 2026-01-08 11:29:41,223 | INFO     | will abort loop
[2026-01-08 06:30:17] 2026-01-08 11:29:41,532 | INFO     | all payload control threads have been joined
[2026-01-08 06:30:17] 2026-01-08 11:29:41,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 06:30:17] 2026-01-08 11:29:41,836 | INFO     | all job control threads have been joined
[2026-01-08 06:30:17] 2026-01-08 11:29:41,955 | INFO     | [job] retrieve thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,001 | INFO     | [data] control thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,123 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,196 | INFO     | [payload] validate_post thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:30:17] 2026-01-08 11:29:42,228 | INFO     | [job] job monitor thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,542 | INFO     | [payload] control thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,655 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,705 | INFO     | [data] copytool_in thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,726 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,733 | INFO     | [job] validate thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,842 | INFO     | [job] control thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:42,974 | INFO     | [data] copytool_out thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:43,003 | INFO     | [payload] failed_post thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:43,160 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:43,229 | INFO     | [job] queue monitor thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:29:45,589 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 06:30:17] 2026-01-08 11:30:09,706 | INFO     | [monitor] cgroup control has ended
[2026-01-08 06:30:17] 2026-01-08 11:30:10,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140878714688)>', '<ExcThread(monitor, started 140140076852992)>']
[2026-01-08 06:30:17] 2026-01-08 11:30:12,207 | INFO     | PID=258749 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 06:30:17] 2026-01-08 11:30:12,208 | INFO     | .. there are 26 such processes running
[2026-01-08 06:30:17] 2026-01-08 11:30:12,209 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 06:30:17] 2026-01-08 11:30:12,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 06:30:17] 2026-01-08 11:30:12,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 06:30:17] 2026-01-08 11:30:12,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 06:30:17] 2026-01-08 11:30:12,209 | INFO     | [monitor] control thread has ended
[2026-01-08 06:30:17] 2026-01-08 11:30:15,555 | INFO     | all workflow threads have been joined
[2026-01-08 06:30:17] 2026-01-08 11:30:15,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 06:30:17] 2026-01-08 11:30:15,608 | INFO     | traces error code: 0
[2026-01-08 06:30:17] 2026-01-08 11:30:15,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 06:30:17] 2026-01-08 11:30:16,515 [wrapper] ==== pilot stdout END ====
[2026-01-08 06:30:17] 2026-01-08 11:30:16,554 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 06:30:17] 2026-01-08 11:30:16,588 [wrapper] pilotpid: 258749
[2026-01-08 06:30:17] 2026-01-08 11:30:16,637 [wrapper] Pilot exit status: 0
[2026-01-08 06:30:17] 2026-01-08 11:30:16,852 [wrapper] pandaids: 6962319953
[2026-01-08 06:30:17] 2026-01-08 11:30:17,019 [wrapper] cleanup supervisor_pilot 2355708 258750
[2026-01-08 06:30:17] 2026-01-08 11:30:17,077 [wrapper] Test setup, not cleaning
[2026-01-08 06:30:17] 2026-01-08 11:30:17,089 [wrapper] apfmon messages muted
[2026-01-08 06:30:17] 2026-01-08 11:30:17,092 [wrapper] ==== wrapper stdout END ====
[2026-01-08 06:30:17] 2026-01-08 11:30:17,129 [wrapper] ==== wrapper stderr END ====
[2026-01-08 06:30:17]  *** Error codes and diagnostics ***
[2026-01-08 06:30:17]     "exeErrorCode": 0,
[2026-01-08 06:30:17]     "exeErrorDiag": "",
[2026-01-08 06:30:17]     "pilotErrorCode": 0,
[2026-01-08 06:30:17]     "pilotErrorDiag": "",
[2026-01-08 06:30:17]  *** Listing of results directory ***
[2026-01-08 06:30:17] total 446032
[2026-01-08 06:30:17] -rwx------. 1 boincer umatlas     36322 Jan  7 15:59 runpilot2-wrapper.sh
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 16:02 queuedata.json
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas       100 Jan  7 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 06:30:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 22:18 run_atlas
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas       105 Jan  7 22:18 job.xml
[2026-01-08 06:30:17] -rw-r--r--. 2 boincer umatlas 226559953 Jan  7 22:18 EVNT.47898824._000598.pool.root.1
[2026-01-08 06:30:17] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 22:18 start_atlas.sh
[2026-01-08 06:30:17] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 22:18 shared
[2026-01-08 06:30:17] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 22:18 input.tar.gz
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas         0 Jan  7 22:18 boinc_lockfile
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas      2519 Jan  7 22:18 pandaJob.out
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas        57 Jan  7 22:18 setup.sh.local
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas    989835 Jan  7 22:19 agis_schedconf.cvmfs.json
[2026-01-08 06:30:17] drwx------. 5 boincer umatlas      4096 Jan  7 22:19 pilot3
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas 217704700 Jan  8 06:27 HITS.47898826._013804.pool.root.1
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas       531 Jan  8 06:28 boinc_task_state.xml
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas      6657 Jan  8 06:28 init_data.xml
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas      1045 Jan  8 06:28 memory_monitor_summary.json
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas   1516240 Jan  8 06:29 agis_ddmendpoints.agis.ALL.json
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas    650997 Jan  8 06:29 log.47898826._013804.job.log.tgz.1
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas      7824 Jan  8 06:29 heartbeat.json
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas        95 Jan  8 06:30 pilot_heartbeat.json
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas      5009 Jan  8 06:30 pilotlog.txt
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 06:30 boinc_mmap_file
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas        28 Jan  8 06:30 wrapper_checkpoint.txt
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas   3626758 Jan  8 06:30 log.47898826._013804.job.log.1
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas       357 Jan  8 06:30 output.list
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas       620 Jan  8 06:30 runtime_log
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas   4300800 Jan  8 06:30 result.tar.gz
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas       656 Jan  8 06:30 yIwLDmIopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSmdKDmEKUKbm.diag
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas      9333 Jan  8 06:30 runtime_log.err
[2026-01-08 06:30:17] -rw-r--r--. 1 boincer umatlas     21484 Jan  8 06:30 stderr.txt
[2026-01-08 06:30:17] HITS file was successfully produced:
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas 217704700 Jan  8 06:27 shared/HITS.pool.root.1
[2026-01-08 06:30:17]  *** Contents of shared directory: ***
[2026-01-08 06:30:17] total 438656
[2026-01-08 06:30:17] -rw-r--r--. 2 boincer umatlas 226559953 Jan  7 22:18 ATLAS.root_0
[2026-01-08 06:30:17] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 22:18 start_atlas.sh
[2026-01-08 06:30:17] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 22:18 input.tar.gz
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas 217704700 Jan  8 06:27 HITS.pool.root.1
[2026-01-08 06:30:17] -rw-------. 1 boincer umatlas   4300800 Jan  8 06:30 result.tar.gz
06:30:19 (251852): run_atlas exited; CPU time 70434.958365
06:30:19 (251852): called boinc_finish(0)

</stderr_txt>
]]>

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