Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:15:48 (781): wrapper (7.7.26015): starting
05:15:48 (781): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 05:15:48] Arguments: --nthreads 8
[2026-01-08 05:15:48] Threads: 8
[2026-01-08 05:15:48] Checking for CVMFS
[2026-01-08 05:15:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:15:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:15:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:15:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:15:52] 2.11.2.0 21292 33465 130204 154891 1 17 24597874 25165824 899 130560 0 7097360 99.539 11266312 5344 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 05:15:52] CVMFS is ok
[2026-01-08 05:15:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:15:52] Checking for apptainer binary...
[2026-01-08 05:15:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:15:52] Running /usr/bin/apptainer --version
[2026-01-08 05:15:52] apptainer version 1.3.2-1.el7
[2026-01-08 05:15:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:15:59] cg-vwn383.simple-grid.lan
[2026-01-08 05:15:59] apptainer works
[2026-01-08 05:15:59] Set ATHENA_PROC_NUMBER=8
[2026-01-08 05:15:59] Set ATHENA_CORE_NUMBER=8
[2026-01-08 05:15:59] Starting ATLAS job with PandaID=6962319251
[2026-01-08 05:15:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:14:04]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:14:04] 2026-01-08 10:12:59,621 | INFO     | time since job start (21163s) is within the limit (174528.0s)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,925 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 11:14:04] 2026-01-08 10:12:59,926 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 11:14:04] 2026-01-08 10:12:59,928 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6962319251/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,929 | INFO     | extracted standard info from prmon json
[2026-01-08 11:14:04] 2026-01-08 10:12:59,929 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 11:14:04] 2026-01-08 10:12:59,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 11:14:04] 2026-01-08 10:12:59,929 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 11:14:04] 2026-01-08 10:12:59,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 11:14:04] 2026-01-08 10:12:59,937 | INFO     | fitting pss+swap vs Time
[2026-01-08 11:14:04] 2026-01-08 10:12:59,938 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,948 | INFO     | sum of deviations: 109328742365.00002
[2026-01-08 11:14:04] 2026-01-08 10:12:59,948 | INFO     | mean x: 1767856803.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,948 | INFO     | mean y: 2451782.2106824927
[2026-01-08 11:14:04] 2026-01-08 10:12:59,948 | INFO     | intersect: -16283649597.993057
[2026-01-08 11:14:04] 2026-01-08 10:12:59,949 | INFO     | chi2: 8.687178608659291
[2026-01-08 11:14:04] 2026-01-08 10:12:59,950 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,953 | INFO     | sum of deviations: 153408418893.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,954 | INFO     | mean x: 1767856650.5
[2026-01-08 11:14:04] 2026-01-08 10:12:59,954 | INFO     | mean y: 2464576.3433734938
[2026-01-08 11:14:04] 2026-01-08 10:12:59,954 | INFO     | intersect: -23898063988.996925
[2026-01-08 11:14:04] 2026-01-08 10:12:59,954 | INFO     | chi2: 7.138490817051612
[2026-01-08 11:14:04] 2026-01-08 10:12:59,955 | INFO     | current chi2=7.138490817051612 (change=17.827281576367763 %)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,955 | INFO     | right removable region: 331
[2026-01-08 11:14:04] 2026-01-08 10:12:59,955 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,959 | INFO     | sum of deviations: -8422916996.499989
[2026-01-08 11:14:04] 2026-01-08 10:12:59,959 | INFO     | mean x: 1767856955.5
[2026-01-08 11:14:04] 2026-01-08 10:12:59,960 | INFO     | mean y: 2486268.0993975904
[2026-01-08 11:14:04] 2026-01-08 10:12:59,960 | INFO     | intersect: 1314749339.8555362
[2026-01-08 11:14:04] 2026-01-08 10:12:59,960 | INFO     | chi2: 3.909459103343906
[2026-01-08 11:14:04] 2026-01-08 10:12:59,967 | INFO     | current chi2=3.909459103343906 (change=54.997367045648204 %)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,967 | INFO     | sum of square deviations: 10842205148.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,971 | INFO     | sum of deviations: -81920707498.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,971 | INFO     | mean x: 1767857108.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,971 | INFO     | mean y: 2508401.4067278286
[2026-01-08 11:14:04] 2026-01-08 10:12:59,972 | INFO     | intersect: 13359948430.056536
[2026-01-08 11:14:04] 2026-01-08 10:12:59,972 | INFO     | chi2: 1.9308916989068399
[2026-01-08 11:14:04] 2026-01-08 10:12:59,972 | INFO     | current chi2=1.9308916989068399 (change=50.60974810414882 %)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,973 | INFO     | sum of square deviations: 10352419220.5
[2026-01-08 11:14:04] 2026-01-08 10:12:59,976 | INFO     | sum of deviations: -85371139924.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,977 | INFO     | mean x: 1767857260.5
[2026-01-08 11:14:04] 2026-01-08 10:12:59,977 | INFO     | mean y: 2509450.1242236025
[2026-01-08 11:14:04] 2026-01-08 10:12:59,977 | INFO     | intersect: 14581129803.224213
[2026-01-08 11:14:04] 2026-01-08 10:12:59,978 | INFO     | chi2: 1.892010928612704
[2026-01-08 11:14:04] 2026-01-08 10:12:59,978 | INFO     | current chi2=1.892010928612704 (change=2.013617351824957 %)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,978 | INFO     | left removable region: 30
[2026-01-08 11:14:04] 2026-01-08 10:12:59,978 | INFO     | sum of square deviations: 8456158550.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,982 | INFO     | sum of deviations: -8437326385.999996
[2026-01-08 11:14:04] 2026-01-08 10:12:59,982 | INFO     | mean x: 1767857535.0
[2026-01-08 11:14:04] 2026-01-08 10:12:59,982 | INFO     | mean y: 2512761.8372093025
[2026-01-08 11:14:04] 2026-01-08 10:12:59,982 | INFO     | intersect: 1766433215.616356
[2026-01-08 11:14:04] 2026-01-08 10:12:59,983 | INFO     | chi2: 0.12037710803673368
[2026-01-08 11:14:04] 2026-01-08 10:12:59,983 | INFO     | current memory leak: -1.00 B/s (using 301 data points, chi2=0.12)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,984 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 11:14:04] 2026-01-08 10:12:59,984 | INFO     | ..............................
[2026-01-08 11:14:04] 2026-01-08 10:12:59,984 | INFO     | . Timing measurements:
[2026-01-08 11:14:04] 2026-01-08 10:12:59,984 | INFO     | . get job = 0 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,984 | INFO     | . initial setup = 11 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,984 | INFO     | . payload setup = 158 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,985 | INFO     | . stage-in = 0 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,985 | INFO     | . payload execution = 20676 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,985 | INFO     | . stage-out = 4 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,985 | INFO     | . log creation = 1 s
[2026-01-08 11:14:04] 2026-01-08 10:12:59,985 | INFO     | ..............................
[2026-01-08 11:14:04] 2026-01-08 10:13:00,137 | INFO     | 
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | job summary report
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | --------------------------------------------------
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | PanDA job id: 6962319251
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | task id: 47898826
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | errors: (none)
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 11:14:04] 2026-01-08 10:13:00,138 | INFO     | pilot state: finished 
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | transexitcode: 0
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | exeerrorcode: 0
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | exeerrordiag: 
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | exitcode: 0
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | exitmsg: OK
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | cpuconsumptiontime: 77803 s
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | nevents: 400
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | neventsw: 0
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | pid: 11008
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | pgrp: 11008
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | corecount: 8
[2026-01-08 11:14:04] 2026-01-08 10:13:00,139 | INFO     | event service: False
[2026-01-08 11:14:04] 2026-01-08 10:13:00,140 | INFO     | sizes: {0: 2283141, 1: 2283827, 2: 2284026, 13: 2284026, 24: 2284082, 35: 2284110, 45: 2284266, 56: 2284294, 67: 2284322, 78: 2284350, 88: 2284406, 99: 2284714, 10
[2026-01-08 11:14:04] 2026-01-08 10:13:00,140 | INFO     | --------------------------------------------------
[2026-01-08 11:14:04] 2026-01-08 10:13:00,140 | INFO     | 
[2026-01-08 11:14:04] 2026-01-08 10:13:00,140 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2026-01-08 11:14:04] 2026-01-08 10:13:00,418 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,418 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,418 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,418 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | job 6962319251 has completed (purged errors)
[2026-01-08 11:14:04] 2026-01-08 10:13:00,420 | INFO     | overall cleanup function is called
[2026-01-08 11:14:04] 2026-01-08 10:13:01,428 | INFO     | --- collectZombieJob: --- 10, [11008]
[2026-01-08 11:14:04] 2026-01-08 10:13:01,429 | INFO     | zombie collector waiting for pid 11008
[2026-01-08 11:14:04] 2026-01-08 10:13:01,429 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:14:04] 2026-01-08 10:13:01,429 | INFO     | collected zombie processes
[2026-01-08 11:14:04] 2026-01-08 10:13:01,429 | INFO     | will attempt to kill all subprocesses of pid=11008
[2026-01-08 11:14:04] 2026-01-08 10:13:01,512 | INFO     | process IDs to be killed: [11008] (in reverse order)
[2026-01-08 11:14:04] 2026-01-08 10:13:02,465 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:14:04] 2026-01-08 10:13:02,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:14:04] 2026-01-08 10:13:02,468 | INFO     | did not find any defunct processes belonging to 11008
[2026-01-08 11:14:04] 2026-01-08 10:13:02,470 | INFO     | did not find any defunct processes belonging to 11008
[2026-01-08 11:14:04] 2026-01-08 10:13:02,470 | INFO     | ready for new job
[2026-01-08 11:14:04] 2026-01-08 10:13:02,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:14:04] 2026-01-08 10:13:02,473 | INFO     | ***************************************
[2026-01-08 11:14:04] 2026-01-08 10:13:02,473 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:14:04] 2026-01-08 10:13:02,473 | INFO     | ***************************************
[2026-01-08 11:14:04] 2026-01-08 10:13:02,473 | INFO     | 
[2026-01-08 11:14:04] 2026-01-08 10:13:02,474 | INFO     | pilot is running in a VM
[2026-01-08 11:14:04] 2026-01-08 10:13:02,474 | INFO     | architecture information:
[2026-01-08 11:14:04] 2026-01-08 10:13:02,481 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:14:04] 2026-01-08 10:13:02,820 | INFO     | cat /etc/os-release:
[2026-01-08 11:14:04] NAME="CentOS Linux"
[2026-01-08 11:14:04] VERSION="7 (Core)"
[2026-01-08 11:14:04] ID="centos"
[2026-01-08 11:14:04] ID_LIKE="rhel fedora"
[2026-01-08 11:14:04] VERSION_ID="7"
[2026-01-08 11:14:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:14:04] ANSI_COLOR="0;31"
[2026-01-08 11:14:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:14:04] HOME_URL="https://www.centos.org/"
[2026-01-08 11:14:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:14:04] 
[2026-01-08 11:14:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:14:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:14:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:14:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:14:04] 
[2026-01-08 11:14:04] 2026-01-08 10:13:02,820 | INFO     | ***************************************
[2026-01-08 11:14:04] 2026-01-08 10:13:03,324 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2026-01-08 11:14:04] 2026-01-08 10:13:03,613 | INFO     | sufficient remaining disk space (496827891712 B)
[2026-01-08 11:14:04] 2026-01-08 10:13:03,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:14:04] 2026-01-08 10:13:03,614 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:14:04] 2026-01-08 10:13:03,614 | INFO     | update_server=False
[2026-01-08 11:14:04] 2026-01-08 10:13:03,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:14:04] 2026-01-08 10:13:03,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:14:04] 2026-01-08 10:13:03,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:14:04] 2026-01-08 10:13:03,671 | INFO     | aborting loop
[2026-01-08 11:14:04] 2026-01-08 10:13:03,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:14:04] 2026-01-08 10:13:03,958 | INFO     | all payload control threads have been joined
[2026-01-08 11:14:04] 2026-01-08 10:13:04,282 | INFO     | all data control threads have been joined
[2026-01-08 11:14:04] 2026-01-08 10:13:04,532 | INFO     | all job control threads have been joined
[2026-01-08 11:14:04] 2026-01-08 10:13:04,620 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:04,641 | INFO     | [job] validate thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:04,677 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:04,704 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:04,965 | INFO     | [payload] control thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,018 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:14:04] 2026-01-08 10:13:05,289 | INFO     | [data] control thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,300 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,539 | INFO     | [job] control thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,799 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,809 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,814 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:05,890 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:06,114 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:06,167 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:07,624 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:14:04] 2026-01-08 10:13:32,721 | INFO     | PID=4534 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 11:14:04] 2026-01-08 10:13:32,722 | INFO     | .. there are 2 such processes running
[2026-01-08 11:14:04] 2026-01-08 10:13:32,722 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:14:04] 2026-01-08 10:13:32,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:14:04] 2026-01-08 10:13:32,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:14:04] 2026-01-08 10:13:52,044 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:14:04] 2026-01-08 10:13:54,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228841809728)>', '<ExcThread(monitor, started 140228123682560)>']
[2026-01-08 11:14:04] 2026-01-08 10:13:54,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:14:04] 2026-01-08 10:13:54,853 | INFO     | [monitor] control thread has ended
[2026-01-08 11:14:04] 2026-01-08 10:13:59,134 | INFO     | all workflow threads have been joined
[2026-01-08 11:14:04] 2026-01-08 10:13:59,135 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:14:04] 2026-01-08 10:13:59,135 | INFO     | traces error code: 0
[2026-01-08 11:14:04] 2026-01-08 10:13:59,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:14:04] 2026-01-08 10:13:59,621 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:14:04] 2026-01-08 10:13:59,642 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:14:04] 2026-01-08 10:13:59,739 [wrapper] pilotpid: 4534
[2026-01-08 11:14:04] 2026-01-08 10:13:59,856 [wrapper] Pilot exit status: 0
[2026-01-08 11:14:04] 2026-01-08 10:14:00,305 [wrapper] pandaids: 6962319251
[2026-01-08 11:14:04] 2026-01-08 10:14:01,380 [wrapper] cleanup supervisor_pilot 10124 4535
[2026-01-08 11:14:04] 2026-01-08 10:14:01,444 [wrapper] Test setup, not cleaning
[2026-01-08 11:14:04] 2026-01-08 10:14:01,573 [wrapper] apfmon messages muted
[2026-01-08 11:14:04] 2026-01-08 10:14:01,677 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:14:04] 2026-01-08 10:14:01,825 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:14:04]  *** Error codes and diagnostics ***
[2026-01-08 11:14:04]     "exeErrorCode": 0,
[2026-01-08 11:14:04]     "exeErrorDiag": "",
[2026-01-08 11:14:04]     "pilotErrorCode": 0,
[2026-01-08 11:14:04]     "pilotErrorDiag": "",
[2026-01-08 11:14:04]  *** Listing of results directory ***
[2026-01-08 11:14:04] total 441800
[2026-01-08 11:14:04] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc       100 Jan  8 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:14:04] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 05:15 run_atlas
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc       105 Jan  8 05:15 job.xml
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc      6391 Jan  8 05:15 init_data.xml
[2026-01-08 11:14:04] -rw-r--r--. 2 boinc boinc 224703009 Jan  8 05:15 EVNT.47898824._000564.pool.root.1
[2026-01-08 11:14:04] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:15 start_atlas.sh
[2026-01-08 11:14:04] drwxrwx--x. 2 boinc boinc        68 Jan  8 05:15 shared
[2026-01-08 11:14:04] -rw-r--r--. 2 boinc boinc    592398 Jan  8 05:15 input.tar.gz
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc         0 Jan  8 05:15 boinc_lockfile
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc      2519 Jan  8 05:15 pandaJob.out
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc    989835 Jan  8 05:20 agis_schedconf.cvmfs.json
[2026-01-08 11:14:04] drwx------. 5 boinc boinc      4096 Jan  8 05:20 pilot3
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc 217081883 Jan  8 11:09 HITS.47898826._013159.pool.root.1
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc       531 Jan  8 11:10 boinc_task_state.xml
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc      1016 Jan  8 11:10 memory_monitor_summary.json
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc   1516240 Jan  8 11:11 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc    550802 Jan  8 11:11 log.47898826._013159.job.log.tgz.1
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc      7778 Jan  8 11:12 heartbeat.json
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc        95 Jan  8 11:13 pilot_heartbeat.json
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc      8192 Jan  8 11:13 boinc_mmap_file
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc        28 Jan  8 11:13 wrapper_checkpoint.txt
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc      4884 Jan  8 11:13 pilotlog.txt
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc   2808062 Jan  8 11:14 log.47898826._013159.job.log.1
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc       357 Jan  8 11:14 output.list
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc       620 Jan  8 11:14 runtime_log
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc   3379200 Jan  8 11:14 result.tar.gz
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc       657 Jan  8 11:14 TmDODmhnpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0piKDmAKEYsm.diag
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc      8833 Jan  8 11:14 runtime_log.err
[2026-01-08 11:14:04] -rw-r--r--. 1 boinc boinc     20530 Jan  8 11:14 stderr.txt
[2026-01-08 11:14:04] HITS file was successfully produced:
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc 217081883 Jan  8 11:09 shared/HITS.pool.root.1
[2026-01-08 11:14:04]  *** Contents of shared directory: ***
[2026-01-08 11:14:04] total 435332
[2026-01-08 11:14:04] -rw-r--r--. 2 boinc boinc 224703009 Jan  8 05:15 ATLAS.root_0
[2026-01-08 11:14:04] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:15 start_atlas.sh
[2026-01-08 11:14:04] -rw-r--r--. 2 boinc boinc    592398 Jan  8 05:15 input.tar.gz
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc 217081883 Jan  8 11:09 HITS.pool.root.1
[2026-01-08 11:14:04] -rw-------. 1 boinc boinc   3379200 Jan  8 11:14 result.tar.gz
11:14:05 (781): run_atlas exited; CPU time 78025.438333
11:14:05 (781): called boinc_finish(0)

</stderr_txt>
]]>

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