Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:58:53 (1621633): wrapper (7.7.26015): starting
01:58:53 (1621633): wrapper: running run_atlas (--nthreads 3)
[2026-01-08 01:58:53] Arguments: --nthreads 3
[2026-01-08 01:58:53] Threads: 3
[2026-01-08 01:58:53] Checking for CVMFS
[2026-01-08 01:58:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 01:58:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 01:58:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 01:58:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 01:58:54] 2.9.2.0 1566360 226 55692 154885 2 57 22481710 36864001 0 130560 0 143144 99.975 11077 21978 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 01:58:54] CVMFS is ok
[2026-01-08 01:58:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 01:58:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 01:58:54] Further information can be found at the LHC@home message board.
[2026-01-08 01:58:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 01:58:54] Checking for apptainer binary...
[2026-01-08 01:58:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 01:58:54] Running /usr/bin/apptainer --version
[2026-01-08 01:58:54] apptainer version 1.4.1-1.1
[2026-01-08 01:58:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 01:58:54] magicA161a
[2026-01-08 01:58:54] apptainer works
[2026-01-08 01:58:54] Set ATHENA_PROC_NUMBER=3
[2026-01-08 01:58:54] Set ATHENA_CORE_NUMBER=3
[2026-01-08 01:58:54] Starting ATLAS job with PandaID=6962318794
[2026-01-08 01:58:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 03:48:12]  *** The last 200 lines of the pilot log: ***
[2026-01-08 03:48:12] 2026-01-08 02:47:12,262 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,262 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,262 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | job 6962318794 has completed (purged errors)
[2026-01-08 03:48:12] 2026-01-08 02:47:12,263 | INFO     | overall cleanup function is called
[2026-01-08 03:48:12] 2026-01-08 02:47:13,270 | INFO     | --- collectZombieJob: --- 10, [1631797]
[2026-01-08 03:48:12] 2026-01-08 02:47:13,270 | INFO     | zombie collector waiting for pid 1631797
[2026-01-08 03:48:12] 2026-01-08 02:47:13,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 03:48:12] 2026-01-08 02:47:13,270 | INFO     | collected zombie processes
[2026-01-08 03:48:12] 2026-01-08 02:47:13,270 | INFO     | will attempt to kill all subprocesses of pid=1631797
[2026-01-08 03:48:12] 2026-01-08 02:47:13,313 | INFO     | process IDs to be killed: [1631797] (in reverse order)
[2026-01-08 03:48:12] 2026-01-08 02:47:13,336 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 03:48:12] 2026-01-08 02:47:13,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 03:48:12] 2026-01-08 02:47:13,337 | INFO     | did not find any defunct processes belonging to 1631797
[2026-01-08 03:48:12] 2026-01-08 02:47:13,338 | INFO     | did not find any defunct processes belonging to 1631797
[2026-01-08 03:48:12] 2026-01-08 02:47:13,338 | INFO     | ready for new job
[2026-01-08 03:48:12] 2026-01-08 02:47:13,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 03:48:12] 2026-01-08 02:47:13,339 | INFO     | ***************************************
[2026-01-08 03:48:12] 2026-01-08 02:47:13,339 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 03:48:12] 2026-01-08 02:47:13,339 | INFO     | ***************************************
[2026-01-08 03:48:12] 2026-01-08 02:47:13,339 | INFO     | 
[2026-01-08 03:48:12] 2026-01-08 02:47:13,340 | INFO     | architecture information:
[2026-01-08 03:48:12] 2026-01-08 02:47:13,340 | INFO     | executing command: cat /etc/os-release
[2026-01-08 03:48:12] 2026-01-08 02:47:13,348 | INFO     | cat /etc/os-release:
[2026-01-08 03:48:12] NAME="CentOS Linux"
[2026-01-08 03:48:12] VERSION="7 (Core)"
[2026-01-08 03:48:12] ID="centos"
[2026-01-08 03:48:12] ID_LIKE="rhel fedora"
[2026-01-08 03:48:12] VERSION_ID="7"
[2026-01-08 03:48:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 03:48:12] ANSI_COLOR="0;31"
[2026-01-08 03:48:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 03:48:12] HOME_URL="https://www.centos.org/"
[2026-01-08 03:48:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 03:48:12] 
[2026-01-08 03:48:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 03:48:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 03:48:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 03:48:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 03:48:12] 
[2026-01-08 03:48:12] 2026-01-08 02:47:13,348 | INFO     | ***************************************
[2026-01-08 03:48:12] 2026-01-08 02:47:13,851 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 03:48:12] 2026-01-08 02:47:13,864 | INFO     | sufficient remaining disk space (383396085760 B)
[2026-01-08 03:48:12] 2026-01-08 02:47:13,864 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 03:48:12] 2026-01-08 02:47:13,864 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 03:48:12] 2026-01-08 02:47:13,864 | INFO     | update_server=False
[2026-01-08 03:48:12] 2026-01-08 02:47:13,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 03:48:12] 2026-01-08 02:47:13,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 03:48:12] 2026-01-08 02:47:13,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 03:48:12] 2026-01-08 02:47:14,130 | INFO     | all payload control threads have been joined
[2026-01-08 03:48:12] 2026-01-08 02:47:14,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 03:48:12] 2026-01-08 02:47:14,367 | INFO     | aborting loop
[2026-01-08 03:48:12] 2026-01-08 02:47:14,566 | INFO     | all job control threads have been joined
[2026-01-08 03:48:12] 2026-01-08 02:47:14,668 | INFO     | all data control threads have been joined
[2026-01-08 03:48:12] 2026-01-08 02:47:14,870 | INFO     | [job] queue monitor thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:14,870 | INFO     | [job] retrieve thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:14,917 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:14,940 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,136 | INFO     | [payload] control thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,262 | INFO     | [payload] validate_post thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,373 | INFO     | [job] job monitor thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,572 | INFO     | [job] control thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,674 | INFO     | [data] control thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,799 | INFO     | [payload] failed_post thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,801 | INFO     | [data] copytool_in thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:15,871 | INFO     | [data] copytool_out thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:16,042 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:16,286 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 03:48:12] 2026-01-08 02:47:16,316 | INFO     | [job] validate thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:20,294 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:23,953 | INFO     | job.realtimelogging is not enabled
[2026-01-08 03:48:12] 2026-01-08 02:47:24,959 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 03:48:12] 2026-01-08 02:47:44,487 | INFO     | PID=1625354 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 03:48:12] 2026-01-08 02:47:44,487 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 03:48:12] 2026-01-08 02:47:44,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 03:48:12] 2026-01-08 02:47:44,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 03:48:12] 2026-01-08 02:48:07,030 | INFO     | [monitor] cgroup control has ended
[2026-01-08 03:48:12] 2026-01-08 02:48:07,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848061327168)>', '<ExcThread(monitor, started 139847490598656)>']
[2026-01-08 03:48:12] 2026-01-08 02:48:08,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 03:48:12] 2026-01-08 02:48:08,615 | INFO     | [monitor] control thread has ended
[2026-01-08 03:48:12] 2026-01-08 02:48:12,767 | INFO     | all workflow threads have been joined
[2026-01-08 03:48:12] 2026-01-08 02:48:12,768 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 03:48:12] 2026-01-08 02:48:12,768 | INFO     | traces error code: 0
[2026-01-08 03:48:12] 2026-01-08 02:48:12,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 03:48:12] 2026-01-08 02:48:12,817 [wrapper] ==== pilot stdout END ====
[2026-01-08 03:48:12] 2026-01-08 02:48:12,819 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 03:48:12] 2026-01-08 02:48:12,822 [wrapper] pilotpid: 1625354
[2026-01-08 03:48:12] 2026-01-08 02:48:12,824 [wrapper] Pilot exit status: 0
[2026-01-08 03:48:12] 2026-01-08 02:48:12,831 [wrapper] pandaids: 6962318794
[2026-01-08 03:48:12] 2026-01-08 02:48:12,847 [wrapper] cleanup supervisor_pilot 1646321 1625355
[2026-01-08 03:48:12] 2026-01-08 02:48:12,850 [wrapper] Test setup, not cleaning
[2026-01-08 03:48:12] 2026-01-08 02:48:12,852 [wrapper] apfmon messages muted
[2026-01-08 03:48:12] 2026-01-08 02:48:12,854 [wrapper] ==== wrapper stdout END ====
[2026-01-08 03:48:12] 2026-01-08 02:48:12,856 [wrapper] ==== wrapper stderr END ====
[2026-01-08 03:48:12]  *** Error codes and diagnostics ***
[2026-01-08 03:48:12]     "exeErrorCode": 0,
[2026-01-08 03:48:12]     "exeErrorDiag": "",
[2026-01-08 03:48:12]     "pilotErrorCode": 0,
[2026-01-08 03:48:12]     "pilotErrorDiag": "",
[2026-01-08 03:48:12]  *** Listing of results directory ***
[2026-01-08 03:48:12] total 435140
[2026-01-08 03:48:12] -rwx------ 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc       100 Jan  8 01:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 03:48:12] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 01:58 run_atlas
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc       105 Jan  8 01:58 job.xml
[2026-01-08 03:48:12] -rw-r--r-- 2 boinc boinc 224675252 Jan  8 01:58 EVNT.47898824._000563.pool.root.1
[2026-01-08 03:48:12] -rw-r--r-- 2 boinc boinc    592396 Jan  8 01:58 input.tar.gz
[2026-01-08 03:48:12] -rw-r--r-- 2 boinc boinc     15847 Jan  8 01:58 start_atlas.sh
[2026-01-08 03:48:12] drwxrwx--x 2 boinc boinc      4096 Jan  8 01:58 shared
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc         0 Jan  8 01:58 boinc_setup_complete
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc      6447 Jan  8 01:58 init_data.xml
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc         0 Jan  8 01:58 boinc_lockfile
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc      2519 Jan  8 01:58 pandaJob.out
[2026-01-08 03:48:12] -rw------- 1 boinc boinc    989777 Jan  8 01:58 agis_schedconf.cvmfs.json
[2026-01-08 03:48:12] -rw------- 1 boinc boinc   1516240 Jan  8 01:58 agis_ddmendpoints.agis.ALL.json
[2026-01-08 03:48:12] drwx------ 5 boinc boinc      4096 Jan  8 01:58 pilot3
[2026-01-08 03:48:12] -rw------- 1 boinc boinc 214577500 Jan  8 03:46 HITS.47898826._013123.pool.root.1
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc       529 Jan  8 03:46 boinc_task_state.xml
[2026-01-08 03:48:12] -rw------- 1 boinc boinc      1016 Jan  8 03:47 memory_monitor_summary.json
[2026-01-08 03:48:12] -rw------- 1 boinc boinc    272275 Jan  8 03:47 log.47898826._013123.job.log.tgz.1
[2026-01-08 03:48:12] -rw------- 1 boinc boinc      7750 Jan  8 03:47 heartbeat.json
[2026-01-08 03:48:12] -rw------- 1 boinc boinc        95 Jan  8 03:47 pilot_heartbeat.json
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc      8192 Jan  8 03:48 boinc_mmap_file
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc        27 Jan  8 03:48 wrapper_checkpoint.txt
[2026-01-08 03:48:12] -rw------- 1 boinc boinc      4824 Jan  8 03:48 pilotlog.txt
[2026-01-08 03:48:12] -rw------- 1 boinc boinc    940494 Jan  8 03:48 log.47898826._013123.job.log.1
[2026-01-08 03:48:12] -rw------- 1 boinc boinc       357 Jan  8 03:48 output.list
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc       620 Jan  8 03:48 runtime_log
[2026-01-08 03:48:12] -rw------- 1 boinc boinc   1228800 Jan  8 03:48 result.tar.gz
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc      8917 Jan  8 03:48 runtime_log.err
[2026-01-08 03:48:12] -rw------- 1 boinc boinc       663 Jan  8 03:48 e3HLDmhnpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRpiKDmDBosem.diag
[2026-01-08 03:48:12] -rw-r--r-- 1 boinc boinc     12739 Jan  8 03:48 stderr.txt
[2026-01-08 03:48:12] HITS file was successfully produced:
[2026-01-08 03:48:12] -rw------- 1 boinc boinc 214577500 Jan  8 03:46 shared/HITS.pool.root.1
[2026-01-08 03:48:12]  *** Contents of shared directory: ***
[2026-01-08 03:48:12] total 430768
[2026-01-08 03:48:12] -rw-r--r-- 2 boinc boinc 224675252 Jan  8 01:58 ATLAS.root_0
[2026-01-08 03:48:12] -rw-r--r-- 2 boinc boinc    592396 Jan  8 01:58 input.tar.gz
[2026-01-08 03:48:12] -rw-r--r-- 2 boinc boinc     15847 Jan  8 01:58 start_atlas.sh
[2026-01-08 03:48:12] -rw------- 1 boinc boinc 214577500 Jan  8 03:46 HITS.pool.root.1
[2026-01-08 03:48:12] -rw------- 1 boinc boinc   1228800 Jan  8 03:48 result.tar.gz
03:48:14 (1621633): run_atlas exited; CPU time 18869.827712
03:48:14 (1621633): called boinc_finish(0)

</stderr_txt>
]]>

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