Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:48 (3969522): wrapper (7.7.26015): starting
00:51:48 (3969522): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 00:51:48] Arguments: --nthreads 4
[2026-01-11 00:51:48] Threads: 4
[2026-01-11 00:51:48] Checking for CVMFS
[2026-01-11 00:51:48] No cvmfs_config command found, will try listing directly
[2026-01-11 00:51:48] CVMFS is ok
[2026-01-11 00:51:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 00:51:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 00:51:48] Further information can be found at the LHC@home message board.
[2026-01-11 00:51:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:51:48] Checking for apptainer binary...
[2026-01-11 00:51:48] which: no apptainer in ((null))
[2026-01-11 00:51:48] apptainer is not installed, using version from CVMFS
[2026-01-11 00:51:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:51:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2026-01-11 00:51:49] apptainer works
[2026-01-11 00:51:49] Set ATHENA_PROC_NUMBER=4
[2026-01-11 00:51:49] Set ATHENA_CORE_NUMBER=4
[2026-01-11 00:51:49] Starting ATLAS job with PandaID=6962318628
[2026-01-11 00:51:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 05:32:41]  *** The last 200 lines of the pilot log: ***
[2026-01-11 05:32:41] 2026-01-11 04:27:46,410 | INFO     | executing command: lscpu
[2026-01-11 05:32:41] 2026-01-11 04:27:46,465 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 05:32:41] 2026-01-11 04:27:47,486 | INFO     | monitor loop #1157: job 0:6962318628 is in state 'finished'
[2026-01-11 05:32:41] 2026-01-11 04:27:47,486 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 05:32:41] 2026-01-11 04:27:47,685 | INFO     | time since job start (16547s) is within the limit (174528.0s)
[2026-01-11 05:32:41] 2026-01-11 04:27:49,690 | INFO     | time since job start (16549s) is within the limit (174528.0s)
[2026-01-11 05:32:41] 2026-01-11 04:27:49,989 | INFO     | monitor loop #1158: job 0:6962318628 is in state 'finished'
[2026-01-11 05:32:41] 2026-01-11 04:27:49,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,057 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 05:32:41] 2026-01-11 04:27:51,068 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2731.440875000001
[2026-01-11 05:32:41] 2026-01-11 04:27:51,081 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6962318628/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,082 | INFO     | extracted standard info from prmon json
[2026-01-11 05:32:41] 2026-01-11 04:27:51,082 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 05:32:41] 2026-01-11 04:27:51,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 05:32:41] 2026-01-11 04:27:51,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 05:32:41] 2026-01-11 04:27:51,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 05:32:41] 2026-01-11 04:27:51,088 | INFO     | fitting pss+swap vs Time
[2026-01-11 05:32:41] 2026-01-11 04:27:51,089 | INFO     | sum of square deviations: 6171352920.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,091 | INFO     | sum of deviations: 29453661998.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,091 | INFO     | mean x: 1768097383.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,091 | INFO     | mean y: 2336187.5830258303
[2026-01-11 05:32:41] 2026-01-11 04:27:51,091 | INFO     | intersect: -8436160747.126446
[2026-01-11 05:32:41] 2026-01-11 04:27:51,092 | INFO     | chi2: 1.3568540397296187
[2026-01-11 05:32:41] 2026-01-11 04:27:51,092 | INFO     | sum of square deviations: 5836025702.5
[2026-01-11 05:32:41] 2026-01-11 04:27:51,094 | INFO     | sum of deviations: 28549362831.500004
[2026-01-11 05:32:41] 2026-01-11 04:27:51,094 | INFO     | mean x: 1768097230.5
[2026-01-11 05:32:41] 2026-01-11 04:27:51,094 | INFO     | mean y: 2335776.2669172934
[2026-01-11 05:32:41] 2026-01-11 04:27:51,094 | INFO     | intersect: -8647051996.869743
[2026-01-11 05:32:41] 2026-01-11 04:27:51,095 | INFO     | chi2: 1.3573097264219747
[2026-01-11 05:32:41] 2026-01-11 04:27:51,095 | INFO     | current chi2=1.3573097264219747 (change=-0.03358406129275084 %)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,095 | INFO     | right removable region: 265
[2026-01-11 05:32:41] 2026-01-11 04:27:51,095 | INFO     | sum of square deviations: 5836025702.5
[2026-01-11 05:32:41] 2026-01-11 04:27:51,097 | INFO     | sum of deviations: -5001065357.999998
[2026-01-11 05:32:41] 2026-01-11 04:27:51,097 | INFO     | mean x: 1768097535.5
[2026-01-11 05:32:41] 2026-01-11 04:27:51,097 | INFO     | mean y: 2351704.165413534
[2026-01-11 05:32:41] 2026-01-11 04:27:51,098 | INFO     | intersect: 1517487480.6522071
[2026-01-11 05:32:41] 2026-01-11 04:27:51,098 | INFO     | chi2: 0.04771548431669369
[2026-01-11 05:32:41] 2026-01-11 04:27:51,098 | INFO     | current chi2=0.04771548431669369 (change=96.48337382507245 %)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,098 | INFO     | sum of square deviations: 5513070810.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,100 | INFO     | sum of deviations: -1717827953.999998
[2026-01-11 05:32:41] 2026-01-11 04:27:51,100 | INFO     | mean x: 1768097688.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,100 | INFO     | mean y: 2350144.256704981
[2026-01-11 05:32:41] 2026-01-11 04:27:51,101 | INFO     | intersect: 553274980.6183056
[2026-01-11 05:32:41] 2026-01-11 04:27:51,101 | INFO     | chi2: 0.03959593500297506
[2026-01-11 05:32:41] 2026-01-11 04:27:51,101 | INFO     | current chi2=0.03959593500297506 (change=17.016592056004612 %)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,101 | INFO     | left removable region: 20
[2026-01-11 05:32:41] 2026-01-11 04:27:51,101 | INFO     | sum of square deviations: 4560048290.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,103 | INFO     | sum of deviations: 6915299465.000002
[2026-01-11 05:32:41] 2026-01-11 04:27:51,103 | INFO     | mean x: 1768097810.0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,103 | INFO     | mean y: 2345250.9714285713
[2026-01-11 05:32:41] 2026-01-11 04:27:51,104 | INFO     | intersect: -2678969740.0065894
[2026-01-11 05:32:41] 2026-01-11 04:27:51,104 | INFO     | chi2: 0.011287024629630896
[2026-01-11 05:32:41] 2026-01-11 04:27:51,104 | INFO     | current memory leak: 1.52 B/s (using 245 data points, chi2=0.01)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | could have reported an average CPU frequency of 2632 MHz (13 samples)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | ..............................
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | . Timing measurements:
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | . get job = 0 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | . initial setup = 1 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | . payload setup = 6 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,105 | INFO     | . stage-in = 0 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,106 | INFO     | . payload execution = 16516 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,106 | INFO     | . stage-out = 1 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,106 | INFO     | . log creation = 0 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,106 | INFO     | ..............................
[2026-01-11 05:32:41] 2026-01-11 04:27:51,245 | INFO     | 
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | job summary report
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | --------------------------------------------------
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | PanDA job id: 6962318628
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | task id: 47898826
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | errors: (none)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | pilot state: finished 
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | transexitcode: 0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | exeerrorcode: 0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,246 | INFO     | exeerrordiag: 
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | exitcode: 0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | exitmsg: OK
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | cpuconsumptiontime: 62139 s
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | nevents: 400
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | neventsw: 0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | pid: 3980212
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | pgrp: 3980212
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | corecount: 4
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | event service: False
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 16527: 2316410, 16528: 2325430, 16531: 2325486, 16535: 2325808}
[2026-01-11 05:32:41] 2026-01-11 04:27:51,247 | INFO     | --------------------------------------------------
[2026-01-11 05:32:41] 2026-01-11 04:27:51,248 | INFO     | 
[2026-01-11 05:32:41] 2026-01-11 04:27:51,248 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2026-01-11 05:32:41] 2026-01-11 04:27:51,271 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,271 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,271 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,272 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 05:32:41] 2026-01-11 04:27:51,274 | INFO     | job 6962318628 has completed (purged errors)
[2026-01-11 05:32:41] 2026-01-11 04:27:51,275 | INFO     | overall cleanup function is called
[2026-01-11 05:32:41] 2026-01-11 04:27:52,281 | INFO     | --- collectZombieJob: --- 10, [3980212]
[2026-01-11 05:32:41] 2026-01-11 04:27:52,282 | INFO     | zombie collector waiting for pid 3980212
[2026-01-11 05:32:41] 2026-01-11 04:27:52,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 05:32:41] 2026-01-11 04:27:52,282 | INFO     | collected zombie processes
[2026-01-11 05:32:41] 2026-01-11 04:27:52,282 | INFO     | will attempt to kill all subprocesses of pid=3980212
[2026-01-11 05:32:41] 2026-01-11 04:27:52,657 | INFO     | process IDs to be killed: [3980212] (in reverse order)
[2026-01-11 05:32:41] 2026-01-11 04:27:52,774 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 05:32:41] 2026-01-11 04:27:52,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 05:32:41] 2026-01-11 04:27:52,788 | INFO     | did not find any defunct processes belonging to 3980212
[2026-01-11 05:32:41] 2026-01-11 04:27:52,801 | INFO     | did not find any defunct processes belonging to 3980212
[2026-01-11 05:32:41] 2026-01-11 04:27:52,801 | INFO     | ready for new job
[2026-01-11 05:32:41] 2026-01-11 04:27:52,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 05:32:41] 2026-01-11 04:27:52,804 | INFO     | ***************************************
[2026-01-11 05:32:41] 2026-01-11 04:27:52,804 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 05:32:41] 2026-01-11 04:27:52,804 | INFO     | ***************************************
[2026-01-11 05:32:41] 2026-01-11 04:27:52,804 | INFO     | 
[2026-01-11 05:32:41] 2026-01-11 04:27:52,808 | INFO     | architecture information:
[2026-01-11 05:32:41] 2026-01-11 04:27:52,808 | INFO     | executing command: cat /etc/os-release
[2026-01-11 05:32:41] 2026-01-11 04:27:52,829 | INFO     | cat /etc/os-release:
[2026-01-11 05:32:41] NAME="CentOS Linux"
[2026-01-11 05:32:41] VERSION="7 (Core)"
[2026-01-11 05:32:41] ID="centos"
[2026-01-11 05:32:41] ID_LIKE="rhel fedora"
[2026-01-11 05:32:41] VERSION_ID="7"
[2026-01-11 05:32:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 05:32:41] ANSI_COLOR="0;31"
[2026-01-11 05:32:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 05:32:41] HOME_URL="https://www.centos.org/"
[2026-01-11 05:32:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 05:32:41] 
[2026-01-11 05:32:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 05:32:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 05:32:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 05:32:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 05:32:41] 
[2026-01-11 05:32:41] 2026-01-11 04:27:52,829 | INFO     | ***************************************
[2026-01-11 05:32:41] 2026-01-11 04:27:53,332 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2026-01-11 05:32:41] 2026-01-11 04:27:53,349 | INFO     | sufficient remaining disk space (694520119296 B)
[2026-01-11 05:32:41] 2026-01-11 04:27:53,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 05:32:41] 2026-01-11 04:27:53,350 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 05:32:41] 2026-01-11 04:27:53,350 | INFO     | update_server=False
[2026-01-11 05:32:41] 2026-01-11 04:27:53,350 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 05:32:41] 2026-01-11 04:27:53,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 05:32:41] 2026-01-11 04:27:53,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 05:32:41] 2026-01-11 04:27:53,497 | INFO     | aborting loop
[2026-01-11 05:32:41] 2026-01-11 04:27:53,518 | INFO     | all payload control threads have been joined
[2026-01-11 05:32:41] 2026-01-11 04:27:53,888 | INFO     | all data control threads have been joined
[2026-01-11 05:32:41] 2026-01-11 04:27:53,943 | INFO     | all job control threads have been joined
[2026-01-11 05:32:41] 2026-01-11 04:27:54,356 | INFO     | [job] retrieve thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,474 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,503 | INFO     | [job] job monitor thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 05:32:41] 2026-01-11 04:27:54,523 | INFO     | [payload] control thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,685 | INFO     | [data] copytool_in thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,822 | INFO     | [job] validate thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,828 | INFO     | [payload] validate_post thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,893 | INFO     | [data] control thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:54,948 | INFO     | [job] control thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:55,171 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:55,525 | INFO     | [payload] failed_post thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:55,530 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:56,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 05:32:41] 2026-01-11 04:27:56,510 | INFO     | [data] copytool_out thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:57,213 | INFO     | [job] queue monitor thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:27:57,356 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:28:03,754 | INFO     | job.realtimelogging is not enabled
[2026-01-11 05:32:41] 2026-01-11 04:28:04,759 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 05:32:41] 2026-01-11 04:28:23,278 | INFO     | PID=3973277 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 05:32:41] 2026-01-11 04:28:23,279 | INFO     | .. there are 5 such processes running
[2026-01-11 05:32:41] 2026-01-11 04:28:23,279 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 05:32:41] 2026-01-11 04:28:23,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 05:32:41] 2026-01-11 04:28:23,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 05:32:41] 2026-01-11 04:28:27,404 | INFO     | [monitor] cgroup control has ended
[2026-01-11 05:32:41] 2026-01-11 04:28:28,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23287897843520)>', '<ExcThread(monitor, started 23287658673920)>']
[2026-01-11 05:32:41] 2026-01-11 04:28:29,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 05:32:41] 2026-01-11 04:28:29,299 | INFO     | [monitor] control thread has ended
[2026-01-11 05:32:41] 2026-01-11 04:28:33,479 | INFO     | all workflow threads have been joined
[2026-01-11 05:32:41] 2026-01-11 04:28:33,480 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 05:32:41] 2026-01-11 04:28:33,480 | INFO     | traces error code: 0
[2026-01-11 05:32:41] 2026-01-11 04:28:33,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 05:32:41] 2026-01-11 04:28:33,652 [wrapper] ==== pilot stdout END ====
[2026-01-11 05:32:41] 2026-01-11 04:28:33,655 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 05:32:41] 2026-01-11 04:28:33,657 [wrapper] pilotpid: 3973277
[2026-01-11 05:32:41] 2026-01-11 04:28:33,660 [wrapper] Pilot exit status: 0
[2026-01-11 05:32:41] 2026-01-11 04:28:33,670 [wrapper] pandaids: 6962318628
[2026-01-11 05:32:41] 2026-01-11 04:28:33,743 [wrapper] cleanup supervisor_pilot  108678 3973278
[2026-01-11 05:32:41] 2026-01-11 04:28:33,746 [wrapper] Test setup, not cleaning
[2026-01-11 05:32:41] 2026-01-11 04:28:33,749 [wrapper] apfmon messages muted
[2026-01-11 05:32:41] 2026-01-11 04:28:33,753 [wrapper] ==== wrapper stdout END ====
[2026-01-11 05:32:41] 2026-01-11 04:28:33,756 [wrapper] ==== wrapper stderr END ====
[2026-01-11 05:32:41]  *** Error codes and diagnostics ***
[2026-01-11 05:32:41]     "exeErrorCode": 0,
[2026-01-11 05:32:41]     "exeErrorDiag": "",
[2026-01-11 05:32:41]     "pilotErrorCode": 0,
[2026-01-11 05:32:41]     "pilotErrorDiag": "",
[2026-01-11 05:32:41]  *** Listing of results directory ***
[2026-01-11 05:32:41] total 438348
[2026-01-11 05:32:41] -rwx------ 1 boinc boinc     36322 Jan  7 21:58 runpilot2-wrapper.sh
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc       100 Jan 11 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 05:32:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 00:51 run_atlas
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc       105 Jan 11 00:51 job.xml
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc      6639 Jan 11 00:51 init_data.xml
[2026-01-11 05:32:41] -rw-r--r-- 2 boinc boinc 225426501 Jan 11 00:51 EVNT.47898824._000555.pool.root.1
[2026-01-11 05:32:41] -rw-r--r-- 2 boinc boinc     15847 Jan 11 00:51 start_atlas.sh
[2026-01-11 05:32:41] drwxrwx--x 2 boinc boinc      4096 Jan 11 00:51 shared
[2026-01-11 05:32:41] -rw-r--r-- 2 boinc boinc    592397 Jan 11 00:51 input.tar.gz
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc         0 Jan 11 00:51 boinc_lockfile
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc      2519 Jan 11 00:51 pandaJob.out
[2026-01-11 05:32:41] -rw------- 1 boinc boinc    989548 Jan 11 00:51 agis_schedconf.cvmfs.json
[2026-01-11 05:32:41] drwx------ 5 boinc boinc      4096 Jan 11 00:52 pilot3
[2026-01-11 05:32:41] -rw------- 1 boinc boinc 214038469 Jan 11 05:27 HITS.47898826._012957.pool.root.1
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc       528 Jan 11 05:27 boinc_task_state.xml
[2026-01-11 05:32:41] -rw------- 1 boinc boinc      1035 Jan 11 05:27 memory_monitor_summary.json
[2026-01-11 05:32:41] -rw------- 1 boinc boinc   1516240 Jan 11 05:27 agis_ddmendpoints.agis.ALL.json
[2026-01-11 05:32:41] -rw------- 1 boinc boinc    440278 Jan 11 05:27 log.47898826._012957.job.log.tgz.1
[2026-01-11 05:32:41] -rw------- 1 boinc boinc      7827 Jan 11 05:27 heartbeat.json
[2026-01-11 05:32:41] -rw------- 1 boinc boinc        95 Jan 11 05:28 pilot_heartbeat.json
[2026-01-11 05:32:41] -rw------- 1 boinc boinc      4905 Jan 11 05:28 pilotlog.txt
[2026-01-11 05:32:41] -rw------- 1 boinc boinc   2305471 Jan 11 05:28 log.47898826._012957.job.log.1
[2026-01-11 05:32:41] -rw------- 1 boinc boinc       357 Jan 11 05:28 output.list
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc       620 Jan 11 05:28 runtime_log
[2026-01-11 05:32:41] -rw------- 1 boinc boinc   2764800 Jan 11 05:28 result.tar.gz
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc      9206 Jan 11 05:28 runtime_log.err
[2026-01-11 05:32:41] -rw------- 1 boinc boinc       665 Jan 11 05:28 esNLDmUnpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZoiKDma7o0pn.diag
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc      8192 Jan 11 05:32 boinc_mmap_file
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc        26 Jan 11 05:32 wrapper_checkpoint.txt
[2026-01-11 05:32:41] -rw-r--r-- 1 boinc boinc     21155 Jan 11 05:32 stderr.txt
[2026-01-11 05:32:41] HITS file was successfully produced:
[2026-01-11 05:32:41] -rw------- 1 boinc boinc 214038469 Jan 11 05:27 shared/HITS.pool.root.1
[2026-01-11 05:32:41]  *** Contents of shared directory: ***
[2026-01-11 05:32:41] total 432472
[2026-01-11 05:32:41] -rw-r--r-- 2 boinc boinc 225426501 Jan 11 00:51 ATLAS.root_0
[2026-01-11 05:32:41] -rw-r--r-- 2 boinc boinc     15847 Jan 11 00:51 start_atlas.sh
[2026-01-11 05:32:41] -rw-r--r-- 2 boinc boinc    592397 Jan 11 00:51 input.tar.gz
[2026-01-11 05:32:41] -rw------- 1 boinc boinc 214038469 Jan 11 05:27 HITS.pool.root.1
[2026-01-11 05:32:41] -rw------- 1 boinc boinc   2764800 Jan 11 05:28 result.tar.gz
05:32:43 (3969522): run_atlas exited; CPU time 62890.214596
05:32:43 (3969522): called boinc_finish(0)

</stderr_txt>
]]>

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