Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:51:42 (1938): wrapper (7.7.26015): starting
05:51:42 (1938): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 05:51:42] Arguments: --nthreads 8
[2026-01-08 05:51:42] Threads: 8
[2026-01-08 05:51:42] Checking for CVMFS
[2026-01-08 05:51:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:51:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:51:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:51:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:51:45] 2.11.2.0 28971 33519 98872 154891 2 60 18369893 25165825 96 130560 0 16930187 99.835 9701190 4321 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 05:51:45] CVMFS is ok
[2026-01-08 05:51:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:51:45] Checking for apptainer binary...
[2026-01-08 05:51:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:51:45] Running /usr/bin/apptainer --version
[2026-01-08 05:51:45] apptainer version 1.3.2-1.el7
[2026-01-08 05:51:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:52:12] cg-vwn489.simple-grid.lan
[2026-01-08 05:52:12] apptainer works
[2026-01-08 05:52:12] Set ATHENA_PROC_NUMBER=8
[2026-01-08 05:52:12] Set ATHENA_CORE_NUMBER=8
[2026-01-08 05:52:12] Starting ATLAS job with PandaID=6962319344
[2026-01-08 05:52:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:37:09]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:37:09] 2026-01-08 10:36:02,721 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 11:37:09] 2026-01-08 10:36:02,722 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-08 11:37:09] 2026-01-08 10:36:02,724 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6962319344/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,724 | INFO     | extracted standard info from prmon json
[2026-01-08 11:37:09] 2026-01-08 10:36:02,724 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 11:37:09] 2026-01-08 10:36:02,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 11:37:09] 2026-01-08 10:36:02,725 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 11:37:09] 2026-01-08 10:36:02,725 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 11:37:09] 2026-01-08 10:36:02,736 | INFO     | fitting pss+swap vs Time
[2026-01-08 11:37:09] 2026-01-08 10:36:02,737 | INFO     | sum of square deviations: 10546523325.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,740 | INFO     | sum of deviations: 144343780219.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,740 | INFO     | mean x: 1767858565.5
[2026-01-08 11:37:09] 2026-01-08 10:36:02,740 | INFO     | mean y: 2452917.74691358
[2026-01-08 11:37:09] 2026-01-08 10:36:02,740 | INFO     | intersect: -24193140300.344093
[2026-01-08 11:37:09] 2026-01-08 10:36:02,741 | INFO     | chi2: 6.969850843758776
[2026-01-08 11:37:09] 2026-01-08 10:36:02,741 | INFO     | sum of square deviations: 10065751520.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,745 | INFO     | sum of deviations: 163352890274.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,745 | INFO     | mean x: 1767858413.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,745 | INFO     | mean y: 2458862.4670846397
[2026-01-08 11:37:09] 2026-01-08 10:36:02,745 | INFO     | intersect: -28687379227.11421
[2026-01-08 11:37:09] 2026-01-08 10:36:02,746 | INFO     | chi2: 6.238654683697527
[2026-01-08 11:37:09] 2026-01-08 10:36:02,746 | INFO     | current chi2=6.238654683697527 (change=10.490843727538381 %)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,746 | INFO     | right removable region: 318
[2026-01-08 11:37:09] 2026-01-08 10:36:02,747 | INFO     | sum of square deviations: 10065751520.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,750 | INFO     | sum of deviations: 32480192919.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,750 | INFO     | mean x: 1767858718.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,750 | INFO     | mean y: 2488376.1504702196
[2026-01-08 11:37:09] 2026-01-08 10:36:02,750 | INFO     | intersect: -5702042686.441866
[2026-01-08 11:37:09] 2026-01-08 10:36:02,751 | INFO     | chi2: 2.3376146680229066
[2026-01-08 11:37:09] 2026-01-08 10:36:02,751 | INFO     | current chi2=2.3376146680229066 (change=66.46105174379524 %)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,751 | INFO     | sum of square deviations: 9599817202.5
[2026-01-08 11:37:09] 2026-01-08 10:36:02,755 | INFO     | sum of deviations: -26798309489.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,755 | INFO     | mean x: 1767858870.5
[2026-01-08 11:37:09] 2026-01-08 10:36:02,755 | INFO     | mean y: 2507700.9108280255
[2026-01-08 11:37:09] 2026-01-08 10:36:02,755 | INFO     | intersect: 4937563040.5266
[2026-01-08 11:37:09] 2026-01-08 10:36:02,756 | INFO     | chi2: 0.8482589201837006
[2026-01-08 11:37:09] 2026-01-08 10:36:02,756 | INFO     | current chi2=0.8482589201837006 (change=63.71262844183229 %)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,756 | INFO     | sum of square deviations: 9148487810.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,759 | INFO     | sum of deviations: -34754444390.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,760 | INFO     | mean x: 1767859023.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,760 | INFO     | mean y: 2510368.2330097086
[2026-01-08 11:37:09] 2026-01-08 10:36:02,760 | INFO     | intersect: 6718479103.202907
[2026-01-08 11:37:09] 2026-01-08 10:36:02,760 | INFO     | chi2: 0.8017969541208712
[2026-01-08 11:37:09] 2026-01-08 10:36:02,761 | INFO     | current chi2=0.8017969541208712 (change=5.47733303562167 %)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,761 | INFO     | left removable region: 30
[2026-01-08 11:37:09] 2026-01-08 10:36:02,761 | INFO     | sum of square deviations: 7407141672.0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,764 | INFO     | sum of deviations: -13174576534.499998
[2026-01-08 11:37:09] 2026-01-08 10:36:02,764 | INFO     | mean x: 1767859297.5
[2026-01-08 11:37:09] 2026-01-08 10:36:02,764 | INFO     | mean y: 2517288.878472222
[2026-01-08 11:37:09] 2026-01-08 10:36:02,764 | INFO     | intersect: 3146887769.219563
[2026-01-08 11:37:09] 2026-01-08 10:36:02,765 | INFO     | chi2: 0.014821386345339646
[2026-01-08 11:37:09] 2026-01-08 10:36:02,765 | INFO     | current memory leak: -1.78 B/s (using 288 data points, chi2=0.01)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,766 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,766 | INFO     | ..............................
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . Timing measurements:
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . get job = 0 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . initial setup = 11 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . payload setup = 146 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . stage-in = 0 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . payload execution = 19887 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . stage-out = 5 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | . log creation = 1 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,767 | INFO     | ..............................
[2026-01-08 11:37:09] 2026-01-08 10:36:02,932 | INFO     | 
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | job summary report
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | --------------------------------------------------
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | PanDA job id: 6962319344
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | task id: 47898826
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | errors: (none)
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | pilot state: finished 
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | transexitcode: 0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | exeerrorcode: 0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,933 | INFO     | exeerrordiag: 
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | exitcode: 0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | exitmsg: OK
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | cpuconsumptiontime: 75116 s
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | nevents: 400
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | neventsw: 0
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | pid: 12162
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | pgrp: 12162
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | corecount: 8
[2026-01-08 11:37:09] 2026-01-08 10:36:02,934 | INFO     | event service: False
[2026-01-08 11:37:09] 2026-01-08 10:36:02,935 | INFO     | sizes: {0: 2283743, 1: 2283998, 12: 2283998, 23: 2284026, 33: 2284054, 44: 2284110, 55: 2284266, 66: 2284294, 76: 2284322, 87: 2284378, 98: 2284406, 109: 2285032, 
[2026-01-08 11:37:09] 2026-01-08 10:36:02,935 | INFO     | --------------------------------------------------
[2026-01-08 11:37:09] 2026-01-08 10:36:02,935 | INFO     | 
[2026-01-08 11:37:09] 2026-01-08 10:36:02,935 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-08 11:37:09] 2026-01-08 10:36:03,282 | INFO     | time since job start (20380s) is within the limit (174528.0s)
[2026-01-08 11:37:09] 2026-01-08 10:36:03,621 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,621 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,621 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:37:09] 2026-01-08 10:36:03,623 | INFO     | job 6962319344 has completed (purged errors)
[2026-01-08 11:37:09] 2026-01-08 10:36:03,624 | INFO     | overall cleanup function is called
[2026-01-08 11:37:09] 2026-01-08 10:36:04,632 | INFO     | --- collectZombieJob: --- 10, [12162]
[2026-01-08 11:37:09] 2026-01-08 10:36:04,632 | INFO     | zombie collector waiting for pid 12162
[2026-01-08 11:37:09] 2026-01-08 10:36:04,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:37:09] 2026-01-08 10:36:04,633 | INFO     | collected zombie processes
[2026-01-08 11:37:09] 2026-01-08 10:36:04,633 | INFO     | will attempt to kill all subprocesses of pid=12162
[2026-01-08 11:37:09] 2026-01-08 10:36:04,731 | INFO     | process IDs to be killed: [12162] (in reverse order)
[2026-01-08 11:37:09] 2026-01-08 10:36:05,587 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:37:09] 2026-01-08 10:36:05,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:37:09] 2026-01-08 10:36:05,589 | INFO     | did not find any defunct processes belonging to 12162
[2026-01-08 11:37:09] 2026-01-08 10:36:05,591 | INFO     | did not find any defunct processes belonging to 12162
[2026-01-08 11:37:09] 2026-01-08 10:36:05,591 | INFO     | ready for new job
[2026-01-08 11:37:09] 2026-01-08 10:36:05,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:37:09] 2026-01-08 10:36:05,594 | INFO     | ***************************************
[2026-01-08 11:37:09] 2026-01-08 10:36:05,594 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:37:09] 2026-01-08 10:36:05,597 | INFO     | ***************************************
[2026-01-08 11:37:09] 2026-01-08 10:36:05,597 | INFO     | 
[2026-01-08 11:37:09] 2026-01-08 10:36:05,598 | INFO     | pilot is running in a VM
[2026-01-08 11:37:09] 2026-01-08 10:36:05,598 | INFO     | architecture information:
[2026-01-08 11:37:09] 2026-01-08 10:36:05,621 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:37:09] 2026-01-08 10:36:05,960 | INFO     | cat /etc/os-release:
[2026-01-08 11:37:09] NAME="CentOS Linux"
[2026-01-08 11:37:09] VERSION="7 (Core)"
[2026-01-08 11:37:09] ID="centos"
[2026-01-08 11:37:09] ID_LIKE="rhel fedora"
[2026-01-08 11:37:09] VERSION_ID="7"
[2026-01-08 11:37:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:37:09] ANSI_COLOR="0;31"
[2026-01-08 11:37:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:37:09] HOME_URL="https://www.centos.org/"
[2026-01-08 11:37:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:37:09] 
[2026-01-08 11:37:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:37:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:37:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:37:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:37:09] 
[2026-01-08 11:37:09] 2026-01-08 10:36:05,960 | INFO     | ***************************************
[2026-01-08 11:37:09] 2026-01-08 10:36:06,463 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-08 11:37:09] 2026-01-08 10:36:06,780 | INFO     | sufficient remaining disk space (497274585088 B)
[2026-01-08 11:37:09] 2026-01-08 10:36:06,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:37:09] 2026-01-08 10:36:06,780 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:37:09] 2026-01-08 10:36:06,780 | INFO     | update_server=False
[2026-01-08 11:37:09] 2026-01-08 10:36:06,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:37:09] 2026-01-08 10:36:06,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:37:09] 2026-01-08 10:36:06,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:37:09] 2026-01-08 10:36:06,782 | INFO     | aborting loop
[2026-01-08 11:37:09] 2026-01-08 10:36:07,187 | INFO     | all job control threads have been joined
[2026-01-08 11:37:09] 2026-01-08 10:36:07,236 | INFO     | all data control threads have been joined
[2026-01-08 11:37:09] 2026-01-08 10:36:07,786 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:07,787 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:07,869 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:07,906 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:07,908 | INFO     | [job] validate thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:07,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:37:09] 2026-01-08 10:36:07,985 | INFO     | all payload control threads have been joined
[2026-01-08 11:37:09] 2026-01-08 10:36:08,051 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:37:09] 2026-01-08 10:36:08,193 | INFO     | [job] control thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,242 | INFO     | [data] control thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,403 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,694 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,899 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,928 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,952 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:08,991 | INFO     | [payload] control thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:10,172 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:10,789 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:37:09] 2026-01-08 10:36:36,404 | INFO     | PID=5685 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 11:37:09] 2026-01-08 10:36:36,404 | INFO     | .. there are 2 such processes running
[2026-01-08 11:37:09] 2026-01-08 10:36:36,404 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:37:09] 2026-01-08 10:36:36,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:37:09] 2026-01-08 10:36:36,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:37:09] 2026-01-08 10:36:58,387 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:37:09] 2026-01-08 10:36:58,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979242731328)>', '<ExcThread(monitor, started 139978780681984)>']
[2026-01-08 11:37:09] 2026-01-08 10:36:59,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:37:09] 2026-01-08 10:36:59,543 | INFO     | [monitor] control thread has ended
[2026-01-08 11:37:09] 2026-01-08 10:37:03,935 | INFO     | all workflow threads have been joined
[2026-01-08 11:37:09] 2026-01-08 10:37:03,936 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:37:09] 2026-01-08 10:37:03,936 | INFO     | traces error code: 0
[2026-01-08 11:37:09] 2026-01-08 10:37:03,936 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:37:09] 2026-01-08 10:37:04,377 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:37:09] 2026-01-08 10:37:04,473 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:37:09] 2026-01-08 10:37:04,584 [wrapper] pilotpid: 5685
[2026-01-08 11:37:09] 2026-01-08 10:37:04,664 [wrapper] Pilot exit status: 0
[2026-01-08 11:37:09] 2026-01-08 10:37:05,170 [wrapper] pandaids: 6962319344
[2026-01-08 11:37:09] 2026-01-08 10:37:06,276 [wrapper] cleanup supervisor_pilot  9911 5686
[2026-01-08 11:37:09] 2026-01-08 10:37:06,376 [wrapper] Test setup, not cleaning
[2026-01-08 11:37:09] 2026-01-08 10:37:06,480 [wrapper] apfmon messages muted
[2026-01-08 11:37:09] 2026-01-08 10:37:06,563 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:37:09] 2026-01-08 10:37:06,671 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:37:09]  *** Error codes and diagnostics ***
[2026-01-08 11:37:09]     "exeErrorCode": 0,
[2026-01-08 11:37:09]     "exeErrorDiag": "",
[2026-01-08 11:37:09]     "pilotErrorCode": 0,
[2026-01-08 11:37:09]     "pilotErrorDiag": "",
[2026-01-08 11:37:09]  *** Listing of results directory ***
[2026-01-08 11:37:09] total 440884
[2026-01-08 11:37:09] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc       100 Jan  8 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:37:09] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 05:51 run_atlas
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc       105 Jan  8 05:51 job.xml
[2026-01-08 11:37:09] -rw-r--r--. 2 boinc boinc 222179454 Jan  8 05:51 EVNT.47898824._000568.pool.root.1
[2026-01-08 11:37:09] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:51 start_atlas.sh
[2026-01-08 11:37:09] drwxrwx--x. 2 boinc boinc        68 Jan  8 05:51 shared
[2026-01-08 11:37:09] -rw-r--r--. 2 boinc boinc    592397 Jan  8 05:51 input.tar.gz
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc      6390 Jan  8 05:51 init_data.xml
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc         0 Jan  8 05:51 boinc_lockfile
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc      2519 Jan  8 05:52 pandaJob.out
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc    989835 Jan  8 05:56 agis_schedconf.cvmfs.json
[2026-01-08 11:37:09] drwx------. 5 boinc boinc      4096 Jan  8 05:56 pilot3
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc 218905623 Jan  8 11:32 HITS.47898826._013252.pool.root.1
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc       531 Jan  8 11:32 boinc_task_state.xml
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc      1016 Jan  8 11:33 memory_monitor_summary.json
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc   1516240 Jan  8 11:34 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc    533649 Jan  8 11:34 log.47898826._013252.job.log.tgz.1
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc        95 Jan  8 11:35 pilot_heartbeat.json
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc      7780 Jan  8 11:36 heartbeat.json
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc      8192 Jan  8 11:36 boinc_mmap_file
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc        28 Jan  8 11:36 wrapper_checkpoint.txt
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc      4884 Jan  8 11:37 pilotlog.txt
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc   2707037 Jan  8 11:37 log.47898826._013252.job.log.1
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc       357 Jan  8 11:37 output.list
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc       620 Jan  8 11:37 runtime_log
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc   3256320 Jan  8 11:37 result.tar.gz
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc      8833 Jan  8 11:37 runtime_log.err
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc       657 Jan  8 11:37 cAQODmrnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOjdKDmOuttTo.diag
[2026-01-08 11:37:09] -rw-r--r--. 1 boinc boinc     20761 Jan  8 11:37 stderr.txt
[2026-01-08 11:37:09] HITS file was successfully produced:
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc 218905623 Jan  8 11:32 shared/HITS.pool.root.1
[2026-01-08 11:37:09]  *** Contents of shared directory: ***
[2026-01-08 11:37:09] total 434528
[2026-01-08 11:37:09] -rw-r--r--. 2 boinc boinc 222179454 Jan  8 05:51 ATLAS.root_0
[2026-01-08 11:37:09] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:51 start_atlas.sh
[2026-01-08 11:37:09] -rw-r--r--. 2 boinc boinc    592397 Jan  8 05:51 input.tar.gz
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc 218905623 Jan  8 11:32 HITS.pool.root.1
[2026-01-08 11:37:09] -rw-------. 1 boinc boinc   3256320 Jan  8 11:37 result.tar.gz
11:37:11 (1938): run_atlas exited; CPU time 75308.607068
11:37:11 (1938): called boinc_finish(0)

</stderr_txt>
]]>

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