Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:25 (31468): wrapper (7.7.26015): starting
05:29:25 (31468): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 05:29:26] Arguments: --nthreads 8
[2026-01-08 05:29:26] Threads: 8
[2026-01-08 05:29:26] Checking for CVMFS
[2026-01-08 05:29:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:29:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:29:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:29:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:29:29] 2.11.2.0 22272 33495 99440 154891 0 60 24984474 25165825 96 130560 0 15036746 99.844 10845543 2947 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 05:29:29] CVMFS is ok
[2026-01-08 05:29:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:29:29] Checking for apptainer binary...
[2026-01-08 05:29:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:29:29] Running /usr/bin/apptainer --version
[2026-01-08 05:29:29] apptainer version 1.3.2-1.el7
[2026-01-08 05:29:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:29:49] cg-vwn457.simple-grid.lan
[2026-01-08 05:29:49] apptainer works
[2026-01-08 05:29:50] Set ATHENA_PROC_NUMBER=8
[2026-01-08 05:29:50] Set ATHENA_CORE_NUMBER=8
[2026-01-08 05:29:50] Starting ATLAS job with PandaID=6962318686
[2026-01-08 05:29:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:28:01]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:28:01] 2026-01-08 10:26:54,606 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 11:28:01] 2026-01-08 10:26:54,607 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,609 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6962318686/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,610 | INFO     | extracted standard info from prmon json
[2026-01-08 11:28:01] 2026-01-08 10:26:54,610 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 11:28:01] 2026-01-08 10:26:54,610 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 11:28:01] 2026-01-08 10:26:54,610 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 11:28:01] 2026-01-08 10:26:54,610 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 11:28:01] 2026-01-08 10:26:54,617 | INFO     | fitting pss+swap vs Time
[2026-01-08 11:28:01] 2026-01-08 10:26:54,618 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,622 | INFO     | sum of deviations: 149963573640.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,622 | INFO     | mean x: 1767857635.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,623 | INFO     | mean y: 2444869.78041543
[2026-01-08 11:28:01] 2026-01-08 10:26:54,623 | INFO     | intersect: -22336814324.347492
[2026-01-08 11:28:01] 2026-01-08 10:26:54,623 | INFO     | chi2: 8.108060787569835
[2026-01-08 11:28:01] 2026-01-08 10:26:54,624 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,628 | INFO     | sum of deviations: 192868112404.49997
[2026-01-08 11:28:01] 2026-01-08 10:26:54,628 | INFO     | mean x: 1767857482.5
[2026-01-08 11:28:01] 2026-01-08 10:26:54,628 | INFO     | mean y: 2457321.8403614457
[2026-01-08 11:28:01] 2026-01-08 10:26:54,628 | INFO     | intersect: -30045776227.226147
[2026-01-08 11:28:01] 2026-01-08 10:26:54,629 | INFO     | chi2: 6.5771735232232285
[2026-01-08 11:28:01] 2026-01-08 10:26:54,629 | INFO     | current chi2=6.5771735232232285 (change=18.881053120538425 %)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,629 | INFO     | right removable region: 331
[2026-01-08 11:28:01] 2026-01-08 10:26:54,630 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,634 | INFO     | sum of deviations: 33404673081.500008
[2026-01-08 11:28:01] 2026-01-08 10:26:54,634 | INFO     | mean x: 1767857787.5
[2026-01-08 11:28:01] 2026-01-08 10:26:54,634 | INFO     | mean y: 2479003.243975904
[2026-01-08 11:28:01] 2026-01-08 10:26:54,634 | INFO     | intersect: -5201862860.435412
[2026-01-08 11:28:01] 2026-01-08 10:26:54,635 | INFO     | chi2: 3.460001072084639
[2026-01-08 11:28:01] 2026-01-08 10:26:54,635 | INFO     | current chi2=3.460001072084639 (change=57.32640439266271 %)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,636 | INFO     | sum of square deviations: 10842205148.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,639 | INFO     | sum of deviations: -35502571936.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,640 | INFO     | mean x: 1767857940.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,640 | INFO     | mean y: 2499757.929663609
[2026-01-08 11:28:01] 2026-01-08 10:26:54,640 | INFO     | intersect: 5791313272.407057
[2026-01-08 11:28:01] 2026-01-08 10:26:54,640 | INFO     | chi2: 1.7647306906858167
[2026-01-08 11:28:01] 2026-01-08 10:26:54,641 | INFO     | current chi2=1.7647306906858167 (change=48.99623861611776 %)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,641 | INFO     | sum of square deviations: 10352419220.5
[2026-01-08 11:28:01] 2026-01-08 10:26:54,645 | INFO     | sum of deviations: -43249974139.49999
[2026-01-08 11:28:01] 2026-01-08 10:26:54,645 | INFO     | mean x: 1767858092.5
[2026-01-08 11:28:01] 2026-01-08 10:26:54,645 | INFO     | mean y: 2502158.332298137
[2026-01-08 11:28:01] 2026-01-08 10:26:54,645 | INFO     | intersect: 7388197729.037552
[2026-01-08 11:28:01] 2026-01-08 10:26:54,646 | INFO     | chi2: 1.734202483463687
[2026-01-08 11:28:01] 2026-01-08 10:26:54,647 | INFO     | current chi2=1.734202483463687 (change=1.729907423453126 %)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,647 | INFO     | left removable region: 30
[2026-01-08 11:28:01] 2026-01-08 10:26:54,647 | INFO     | sum of square deviations: 8456158550.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,651 | INFO     | sum of deviations: 20081242699.999996
[2026-01-08 11:28:01] 2026-01-08 10:26:54,651 | INFO     | mean x: 1767858367.0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,651 | INFO     | mean y: 2509375.5215946846
[2026-01-08 11:28:01] 2026-01-08 10:26:54,651 | INFO     | intersect: -4195708138.618164
[2026-01-08 11:28:01] 2026-01-08 10:26:54,652 | INFO     | chi2: 0.003671303861169157
[2026-01-08 11:28:01] 2026-01-08 10:26:54,652 | INFO     | current memory leak: 2.37 B/s (using 301 data points, chi2=0.00)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | ..............................
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | . Timing measurements:
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | . get job = 0 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | . initial setup = 9 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | . payload setup = 151 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | . stage-in = 0 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,653 | INFO     | . payload execution = 20672 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,654 | INFO     | . stage-out = 4 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,654 | INFO     | . log creation = 1 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,654 | INFO     | ..............................
[2026-01-08 11:28:01] 2026-01-08 10:26:54,870 | INFO     | 
[2026-01-08 11:28:01] 2026-01-08 10:26:54,870 | INFO     | job summary report
[2026-01-08 11:28:01] 2026-01-08 10:26:54,870 | INFO     | --------------------------------------------------
[2026-01-08 11:28:01] 2026-01-08 10:26:54,870 | INFO     | PanDA job id: 6962318686
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | task id: 47898826
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | errors: (none)
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | pilot state: finished 
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | transexitcode: 0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | exeerrorcode: 0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | exeerrordiag: 
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | exitcode: 0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | exitmsg: OK
[2026-01-08 11:28:01] 2026-01-08 10:26:54,871 | INFO     | cpuconsumptiontime: 77341 s
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | nevents: 400
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | neventsw: 0
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | pid: 9276
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | pgrp: 9276
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | corecount: 8
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | event service: False
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | sizes: {0: 2283141, 1: 2283827, 2: 2284026, 12: 2284026, 23: 2284054, 34: 2284082, 45: 2284238, 55: 2284266, 66: 2284294, 77: 2284322, 88: 2284378, 98: 2284686, 10
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | --------------------------------------------------
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | 
[2026-01-08 11:28:01] 2026-01-08 10:26:54,872 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-08 11:28:01] 2026-01-08 10:26:55,206 | INFO     | time since job start (21162s) is within the limit (174528.0s)
[2026-01-08 11:28:01] 2026-01-08 10:26:55,335 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,335 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,335 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,336 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 11:28:01] 2026-01-08 10:26:55,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,338 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:28:01] 2026-01-08 10:26:55,338 | INFO     | job 6962318686 has completed (purged errors)
[2026-01-08 11:28:01] 2026-01-08 10:26:55,338 | INFO     | overall cleanup function is called
[2026-01-08 11:28:01] 2026-01-08 10:26:56,347 | INFO     | --- collectZombieJob: --- 10, [9276]
[2026-01-08 11:28:01] 2026-01-08 10:26:56,347 | INFO     | zombie collector waiting for pid 9276
[2026-01-08 11:28:01] 2026-01-08 10:26:56,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:28:01] 2026-01-08 10:26:56,347 | INFO     | collected zombie processes
[2026-01-08 11:28:01] 2026-01-08 10:26:56,347 | INFO     | will attempt to kill all subprocesses of pid=9276
[2026-01-08 11:28:01] 2026-01-08 10:26:56,434 | INFO     | process IDs to be killed: [9276] (in reverse order)
[2026-01-08 11:28:01] 2026-01-08 10:26:57,109 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:28:01] 2026-01-08 10:26:57,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:28:01] 2026-01-08 10:26:57,112 | INFO     | did not find any defunct processes belonging to 9276
[2026-01-08 11:28:01] 2026-01-08 10:26:57,114 | INFO     | did not find any defunct processes belonging to 9276
[2026-01-08 11:28:01] 2026-01-08 10:26:57,114 | INFO     | ready for new job
[2026-01-08 11:28:01] 2026-01-08 10:26:57,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:28:01] 2026-01-08 10:26:57,116 | INFO     | ***************************************
[2026-01-08 11:28:01] 2026-01-08 10:26:57,116 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:28:01] 2026-01-08 10:26:57,117 | INFO     | ***************************************
[2026-01-08 11:28:01] 2026-01-08 10:26:57,117 | INFO     | 
[2026-01-08 11:28:01] 2026-01-08 10:26:57,117 | INFO     | pilot is running in a VM
[2026-01-08 11:28:01] 2026-01-08 10:26:57,117 | INFO     | architecture information:
[2026-01-08 11:28:01] 2026-01-08 10:26:57,120 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:28:01] 2026-01-08 10:26:57,530 | INFO     | cat /etc/os-release:
[2026-01-08 11:28:01] NAME="CentOS Linux"
[2026-01-08 11:28:01] VERSION="7 (Core)"
[2026-01-08 11:28:01] ID="centos"
[2026-01-08 11:28:01] ID_LIKE="rhel fedora"
[2026-01-08 11:28:01] VERSION_ID="7"
[2026-01-08 11:28:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:28:01] ANSI_COLOR="0;31"
[2026-01-08 11:28:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:28:01] HOME_URL="https://www.centos.org/"
[2026-01-08 11:28:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:28:01] 
[2026-01-08 11:28:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:28:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:28:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:28:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:28:01] 
[2026-01-08 11:28:01] 2026-01-08 10:26:57,530 | INFO     | ***************************************
[2026-01-08 11:28:01] 2026-01-08 10:26:58,034 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-08 11:28:01] 2026-01-08 10:27:00,226 | INFO     | sufficient remaining disk space (496607690752 B)
[2026-01-08 11:28:01] 2026-01-08 10:27:00,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:28:01] 2026-01-08 10:27:00,227 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:28:01] 2026-01-08 10:27:00,227 | INFO     | update_server=False
[2026-01-08 11:28:01] 2026-01-08 10:27:00,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:28:01] 2026-01-08 10:27:00,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:28:01] 2026-01-08 10:27:00,228 | INFO     | aborting loop
[2026-01-08 11:28:01] 2026-01-08 10:27:00,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:28:01] 2026-01-08 10:27:00,359 | INFO     | all data control threads have been joined
[2026-01-08 11:28:01] 2026-01-08 10:27:00,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:28:01] 2026-01-08 10:27:01,147 | INFO     | all job control threads have been joined
[2026-01-08 11:28:01] 2026-01-08 10:27:01,233 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:01,234 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:01,235 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:01,251 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:01,268 | INFO     | [job] validate thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:01,365 | INFO     | [data] control thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:01,540 | INFO     | all payload control threads have been joined
[2026-01-08 11:28:01] 2026-01-08 10:27:01,965 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,153 | INFO     | [job] control thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:28:01] 2026-01-08 10:27:02,455 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,459 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,527 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,546 | INFO     | [payload] control thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,690 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,728 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:02,768 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:06,319 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:28:01] 2026-01-08 10:27:28,362 | INFO     | PID=2804 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 11:28:01] 2026-01-08 10:27:28,362 | INFO     | .. there are 2 such processes running
[2026-01-08 11:28:01] 2026-01-08 10:27:28,364 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:28:01] 2026-01-08 10:27:28,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:28:01] 2026-01-08 10:27:28,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:28:01] 2026-01-08 10:27:49,608 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:28:01] 2026-01-08 10:27:51,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704202078016)>', '<ExcThread(monitor, started 140703455766272)>']
[2026-01-08 11:28:01] 2026-01-08 10:27:51,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:28:01] 2026-01-08 10:27:51,502 | INFO     | [monitor] control thread has ended
[2026-01-08 11:28:01] 2026-01-08 10:27:56,263 | INFO     | all workflow threads have been joined
[2026-01-08 11:28:01] 2026-01-08 10:27:56,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:28:01] 2026-01-08 10:27:56,263 | INFO     | traces error code: 0
[2026-01-08 11:28:01] 2026-01-08 10:27:56,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:28:01] 2026-01-08 10:27:56,725 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:28:01] 2026-01-08 10:27:56,821 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:28:01] 2026-01-08 10:27:56,934 [wrapper] pilotpid: 2804
[2026-01-08 11:28:01] 2026-01-08 10:27:56,993 [wrapper] Pilot exit status: 0
[2026-01-08 11:28:01] 2026-01-08 10:27:57,484 [wrapper] pandaids: 6962318686
[2026-01-08 11:28:01] 2026-01-08 10:27:58,440 [wrapper] cleanup supervisor_pilot  8481 2805
[2026-01-08 11:28:01] 2026-01-08 10:27:58,514 [wrapper] Test setup, not cleaning
[2026-01-08 11:28:01] 2026-01-08 10:27:58,644 [wrapper] apfmon messages muted
[2026-01-08 11:28:01] 2026-01-08 10:27:58,763 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:28:01] 2026-01-08 10:27:58,876 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:28:01]  *** Error codes and diagnostics ***
[2026-01-08 11:28:01]     "exeErrorCode": 0,
[2026-01-08 11:28:01]     "exeErrorDiag": "",
[2026-01-08 11:28:01]     "pilotErrorCode": 0,
[2026-01-08 11:28:01]     "pilotErrorDiag": "",
[2026-01-08 11:28:01]  *** Listing of results directory ***
[2026-01-08 11:28:01] total 439608
[2026-01-08 11:28:01] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc       100 Jan  8 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:28:01] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 05:29 run_atlas
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc       105 Jan  8 05:29 job.xml
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc      6390 Jan  8 05:29 init_data.xml
[2026-01-08 11:28:01] -rw-r--r--. 2 boinc boinc 222642394 Jan  8 05:29 EVNT.47898824._000558.pool.root.1
[2026-01-08 11:28:01] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:29 start_atlas.sh
[2026-01-08 11:28:01] drwxrwx--x. 2 boinc boinc        68 Jan  8 05:29 shared
[2026-01-08 11:28:01] -rw-r--r--. 2 boinc boinc    592396 Jan  8 05:29 input.tar.gz
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc         0 Jan  8 05:29 boinc_lockfile
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc      2519 Jan  8 05:29 pandaJob.out
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc    989835 Jan  8 05:34 agis_schedconf.cvmfs.json
[2026-01-08 11:28:01] drwx------. 5 boinc boinc      4096 Jan  8 05:34 pilot3
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc 216853943 Jan  8 11:23 HITS.47898826._013015.pool.root.1
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc       531 Jan  8 11:23 boinc_task_state.xml
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc      1015 Jan  8 11:24 memory_monitor_summary.json
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc   1516240 Jan  8 11:24 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc    561667 Jan  8 11:24 log.47898826._013015.job.log.tgz.1
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc      7780 Jan  8 11:26 heartbeat.json
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc        95 Jan  8 11:27 pilot_heartbeat.json
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc        28 Jan  8 11:27 wrapper_checkpoint.txt
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc      8192 Jan  8 11:27 boinc_mmap_file
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc      4884 Jan  8 11:27 pilotlog.txt
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc   2821190 Jan  8 11:27 log.47898826._013015.job.log.1
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc       357 Jan  8 11:28 output.list
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc       620 Jan  8 11:28 runtime_log
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc   3399680 Jan  8 11:28 result.tar.gz
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc      8833 Jan  8 11:28 runtime_log.err
[2026-01-08 11:28:01] -rw-------. 1 boinc boinc       657 Jan  8 11:28 lGqMDmfnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbhdKDm8gd48n.diag
[2026-01-08 11:28:01] -rw-r--r--. 1 boinc boinc     20767 Jan  8 11:28 stderr.txt
[2026-01-08 11:28:02] HITS file was successfully produced:
[2026-01-08 11:28:02] -rw-------. 1 boinc boinc 216853943 Jan  8 11:23 shared/HITS.pool.root.1
[2026-01-08 11:28:02]  *** Contents of shared directory: ***
[2026-01-08 11:28:02] total 433116
[2026-01-08 11:28:02] -rw-r--r--. 2 boinc boinc 222642394 Jan  8 05:29 ATLAS.root_0
[2026-01-08 11:28:02] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:29 start_atlas.sh
[2026-01-08 11:28:02] -rw-r--r--. 2 boinc boinc    592396 Jan  8 05:29 input.tar.gz
[2026-01-08 11:28:02] -rw-------. 1 boinc boinc 216853943 Jan  8 11:23 HITS.pool.root.1
[2026-01-08 11:28:02] -rw-------. 1 boinc boinc   3399680 Jan  8 11:28 result.tar.gz
11:28:03 (31468): run_atlas exited; CPU time 77549.561103
11:28:03 (31468): called boinc_finish(0)

</stderr_txt>
]]>

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