Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:26:24 (2420407): wrapper (7.7.26015): starting
09:26:24 (2420407): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 09:26:24] Arguments: --nthreads 4
[2026-01-08 09:26:24] Threads: 4
[2026-01-08 09:26:24] Checking for CVMFS
[2026-01-08 09:26:24] No cvmfs_config command found, will try listing directly
[2026-01-08 09:26:24] CVMFS is ok
[2026-01-08 09:26:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:26:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:26:24] Further information can be found at the LHC@home message board.
[2026-01-08 09:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:26:24] Checking for apptainer binary...
[2026-01-08 09:26:24] which: no apptainer in ((null))
[2026-01-08 09:26:24] apptainer is not installed, using version from CVMFS
[2026-01-08 09:26:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:26:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-01-08 09:26:24] apptainer works
[2026-01-08 09:26:24] Set ATHENA_PROC_NUMBER=4
[2026-01-08 09:26:24] Set ATHENA_CORE_NUMBER=4
[2026-01-08 09:26:24] Starting ATLAS job with PandaID=6962318644
[2026-01-08 09:26:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:33:29]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:33:29] 2026-01-08 12:31:01,265 | INFO     | total number of processed events: 400 (read)
[2026-01-08 13:33:29] 2026-01-08 12:31:01,266 | INFO     | executing command: lscpu
[2026-01-08 13:33:29] 2026-01-08 12:31:01,321 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 13:33:29] 2026-01-08 12:31:01,360 | INFO     | monitor loop #1061: job 0:6962318644 is in state 'finished'
[2026-01-08 13:33:29] 2026-01-08 12:31:01,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 13:33:29] 2026-01-08 12:31:02,090 | INFO     | time since job start (14667s) is within the limit (174528.0s)
[2026-01-08 13:33:29] 2026-01-08 12:31:03,864 | INFO     | monitor loop #1062: job 0:6962318644 is in state 'finished'
[2026-01-08 13:33:29] 2026-01-08 12:31:03,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 13:33:29] 2026-01-08 12:31:04,097 | INFO     | time since job start (14669s) is within the limit (174528.0s)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,616 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-08 13:33:29] 2026-01-08 12:31:05,627 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2576.1157812499996
[2026-01-08 13:33:29] 2026-01-08 12:31:05,642 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6962318644/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,643 | INFO     | extracted standard info from prmon json
[2026-01-08 13:33:29] 2026-01-08 12:31:05,643 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 13:33:29] 2026-01-08 12:31:05,643 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 13:33:29] 2026-01-08 12:31:05,644 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 13:33:29] 2026-01-08 12:31:05,644 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 13:33:29] 2026-01-08 12:31:05,649 | INFO     | fitting pss+swap vs Time
[2026-01-08 13:33:29] 2026-01-08 12:31:05,649 | INFO     | sum of square deviations: 4286517580.0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,651 | INFO     | sum of deviations: -5670750899.499999
[2026-01-08 13:33:29] 2026-01-08 12:31:05,651 | INFO     | mean x: 1767868112.5
[2026-01-08 13:33:29] 2026-01-08 12:31:05,651 | INFO     | mean y: 2355359.1625
[2026-01-08 13:33:29] 2026-01-08 12:31:05,651 | INFO     | intersect: 2341116253.537915
[2026-01-08 13:33:29] 2026-01-08 12:31:05,652 | INFO     | chi2: 1.365893924291452
[2026-01-08 13:33:29] 2026-01-08 12:31:05,652 | INFO     | sum of square deviations: 4024149870.0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,654 | INFO     | sum of deviations: -5411075332.999999
[2026-01-08 13:33:29] 2026-01-08 12:31:05,654 | INFO     | mean x: 1767867960.0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,654 | INFO     | mean y: 2355510.119148936
[2026-01-08 13:33:29] 2026-01-08 12:31:05,654 | INFO     | intersect: 2379520133.5522785
[2026-01-08 13:33:29] 2026-01-08 12:31:05,654 | INFO     | chi2: 1.3657712622888405
[2026-01-08 13:33:29] 2026-01-08 12:31:05,655 | INFO     | current chi2=1.3657712622888405 (change=0.008980346162327598 %)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,655 | INFO     | right removable region: 234
[2026-01-08 13:33:29] 2026-01-08 12:31:05,655 | INFO     | sum of square deviations: 4024149870.0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,657 | INFO     | sum of deviations: -34543413181.99999
[2026-01-08 13:33:29] 2026-01-08 12:31:05,657 | INFO     | mean x: 1767868265.0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,657 | INFO     | mean y: 2371944.8382978723
[2026-01-08 13:33:29] 2026-01-08 12:31:05,657 | INFO     | intersect: 15177801762.823795
[2026-01-08 13:33:29] 2026-01-08 12:31:05,657 | INFO     | chi2: 0.08342246896132066
[2026-01-08 13:33:29] 2026-01-08 12:31:05,657 | INFO     | current chi2=0.08342246896132066 (change=93.89246357438807 %)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,658 | INFO     | sum of square deviations: 3772712597.5
[2026-01-08 13:33:29] 2026-01-08 12:31:05,659 | INFO     | sum of deviations: -30113579487.49999
[2026-01-08 13:33:29] 2026-01-08 12:31:05,660 | INFO     | mean x: 1767868417.5
[2026-01-08 13:33:29] 2026-01-08 12:31:05,660 | INFO     | mean y: 2369253.586956522
[2026-01-08 13:33:29] 2026-01-08 12:31:05,660 | INFO     | intersect: 14113395402.01518
[2026-01-08 13:33:29] 2026-01-08 12:31:05,660 | INFO     | chi2: 0.07954836047354605
[2026-01-08 13:33:29] 2026-01-08 12:31:05,660 | INFO     | current chi2=0.07954836047354605 (change=4.643962874763234 %)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,660 | INFO     | left removable region: 20
[2026-01-08 13:33:29] 2026-01-08 12:31:05,661 | INFO     | sum of square deviations: 3038856977.5
[2026-01-08 13:33:29] 2026-01-08 12:31:05,662 | INFO     | sum of deviations: -18434593816.000008
[2026-01-08 13:33:29] 2026-01-08 12:31:05,662 | INFO     | mean x: 1767868539.5
[2026-01-08 13:33:29] 2026-01-08 12:31:05,662 | INFO     | mean y: 2362427.4672897197
[2026-01-08 13:33:29] 2026-01-08 12:31:05,662 | INFO     | intersect: 10726769231.429047
[2026-01-08 13:33:29] 2026-01-08 12:31:05,663 | INFO     | chi2: 0.05657284305182488
[2026-01-08 13:33:29] 2026-01-08 12:31:05,663 | INFO     | current memory leak: -6.07 B/s (using 214 data points, chi2=0.06)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,663 | INFO     | could have reported an average CPU frequency of 2556 MHz (12 samples)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | ..............................
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . Timing measurements:
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . get job = 0 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . initial setup = 1 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . payload setup = 6 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . stage-in = 0 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . payload execution = 14634 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . stage-out = 1 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | . log creation = 0 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,664 | INFO     | ..............................
[2026-01-08 13:33:29] 2026-01-08 12:31:05,758 | INFO     | 
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | job summary report
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | --------------------------------------------------
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | PanDA job id: 6962318644
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | task id: 47898826
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | errors: (none)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | pilot state: finished 
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | transexitcode: 0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | exeerrorcode: 0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | exeerrordiag: 
[2026-01-08 13:33:29] 2026-01-08 12:31:05,759 | INFO     | exitcode: 0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | exitmsg: OK
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | cpuconsumptiontime: 56819 s
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | nevents: 400
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | neventsw: 0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | pid: 2431247
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | pgrp: 2431247
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | corecount: 4
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | event service: False
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 14644: 2315207, 14645: 2315206, 14647: 2324466, 14654: 2324604}
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | --------------------------------------------------
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | 
[2026-01-08 13:33:29] 2026-01-08 12:31:05,760 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2026-01-08 13:33:29] 2026-01-08 12:31:05,785 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,786 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,786 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,786 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,786 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,786 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,786 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,787 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,788 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,788 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 13:33:29] 2026-01-08 12:31:05,788 | INFO     | job 6962318644 has completed (purged errors)
[2026-01-08 13:33:29] 2026-01-08 12:31:05,788 | INFO     | overall cleanup function is called
[2026-01-08 13:33:29] 2026-01-08 12:31:06,796 | INFO     | --- collectZombieJob: --- 10, [2431247]
[2026-01-08 13:33:29] 2026-01-08 12:31:06,796 | INFO     | zombie collector waiting for pid 2431247
[2026-01-08 13:33:29] 2026-01-08 12:31:06,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 13:33:29] 2026-01-08 12:31:06,797 | INFO     | collected zombie processes
[2026-01-08 13:33:29] 2026-01-08 12:31:06,797 | INFO     | will attempt to kill all subprocesses of pid=2431247
[2026-01-08 13:33:29] 2026-01-08 12:31:07,221 | INFO     | process IDs to be killed: [2431247] (in reverse order)
[2026-01-08 13:33:29] 2026-01-08 12:31:07,344 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 13:33:29] 2026-01-08 12:31:07,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 13:33:29] 2026-01-08 12:31:07,360 | INFO     | did not find any defunct processes belonging to 2431247
[2026-01-08 13:33:29] 2026-01-08 12:31:07,375 | INFO     | did not find any defunct processes belonging to 2431247
[2026-01-08 13:33:29] 2026-01-08 12:31:07,375 | INFO     | ready for new job
[2026-01-08 13:33:29] 2026-01-08 12:31:07,375 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 13:33:29] 2026-01-08 12:31:07,378 | INFO     | ***************************************
[2026-01-08 13:33:29] 2026-01-08 12:31:07,378 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 13:33:29] 2026-01-08 12:31:07,378 | INFO     | ***************************************
[2026-01-08 13:33:29] 2026-01-08 12:31:07,379 | INFO     | 
[2026-01-08 13:33:29] 2026-01-08 12:31:07,383 | INFO     | architecture information:
[2026-01-08 13:33:29] 2026-01-08 12:31:07,384 | INFO     | executing command: cat /etc/os-release
[2026-01-08 13:33:29] 2026-01-08 12:31:07,404 | INFO     | cat /etc/os-release:
[2026-01-08 13:33:29] NAME="CentOS Linux"
[2026-01-08 13:33:29] VERSION="7 (Core)"
[2026-01-08 13:33:29] ID="centos"
[2026-01-08 13:33:29] ID_LIKE="rhel fedora"
[2026-01-08 13:33:29] VERSION_ID="7"
[2026-01-08 13:33:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:33:29] ANSI_COLOR="0;31"
[2026-01-08 13:33:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:33:29] HOME_URL="https://www.centos.org/"
[2026-01-08 13:33:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:33:29] 
[2026-01-08 13:33:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:33:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:33:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:33:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:33:29] 
[2026-01-08 13:33:29] 2026-01-08 12:31:07,405 | INFO     | ***************************************
[2026-01-08 13:33:29] 2026-01-08 12:31:07,908 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2026-01-08 13:33:29] 2026-01-08 12:31:07,928 | INFO     | sufficient remaining disk space (681095200768 B)
[2026-01-08 13:33:29] 2026-01-08 12:31:07,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:33:29] 2026-01-08 12:31:07,928 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:33:29] 2026-01-08 12:31:07,929 | INFO     | update_server=False
[2026-01-08 13:33:29] 2026-01-08 12:31:07,929 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:33:29] 2026-01-08 12:31:07,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:33:29] 2026-01-08 12:31:07,929 | INFO     | aborting loop
[2026-01-08 13:33:29] 2026-01-08 12:31:08,220 | INFO     | all data control threads have been joined
[2026-01-08 13:33:29] 2026-01-08 12:31:08,434 | INFO     | all job control threads have been joined
[2026-01-08 13:33:29] 2026-01-08 12:31:08,934 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:08,935 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:09,026 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:09,138 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:09,226 | INFO     | [data] control thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:09,262 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:09,370 | INFO     | all payload control threads have been joined
[2026-01-08 13:33:29] 2026-01-08 12:31:09,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:33:29] 2026-01-08 12:31:09,439 | INFO     | [job] control thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:09,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:33:29] 2026-01-08 12:31:09,675 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:10,175 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:10,264 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:10,375 | INFO     | [payload] control thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:10,411 | INFO     | [job] validate thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:10,462 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:10,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:33:29] 2026-01-08 12:31:11,392 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:11,773 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:13,480 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:33:29] 2026-01-08 12:31:37,670 | INFO     | PID=2424217 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 13:33:29] 2026-01-08 12:31:37,670 | INFO     | .. there are 4 such processes running
[2026-01-08 13:33:29] 2026-01-08 12:31:37,671 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:33:29] 2026-01-08 12:31:37,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:33:29] 2026-01-08 12:31:37,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:33:29] 2026-01-08 12:31:58,805 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:33:29] 2026-01-08 12:32:00,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23029625419584)>', '<ExcThread(monitor, started 23029388117760)>']
[2026-01-08 13:33:29] 2026-01-08 12:32:00,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:33:29] 2026-01-08 12:32:00,786 | INFO     | [monitor] control thread has ended
[2026-01-08 13:33:29] 2026-01-08 12:32:05,139 | INFO     | all workflow threads have been joined
[2026-01-08 13:33:29] 2026-01-08 12:32:05,139 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:33:29] 2026-01-08 12:32:05,139 | INFO     | traces error code: 0
[2026-01-08 13:33:29] 2026-01-08 12:32:05,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:33:29] 2026-01-08 12:32:05,299 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:33:29] 2026-01-08 12:32:05,302 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:33:29] 2026-01-08 12:32:05,304 [wrapper] pilotpid: 2424217
[2026-01-08 13:33:29] 2026-01-08 12:32:05,307 [wrapper] Pilot exit status: 0
[2026-01-08 13:33:29] 2026-01-08 12:32:05,317 [wrapper] pandaids: 6962318644
[2026-01-08 13:33:29] 2026-01-08 12:32:05,398 [wrapper] cleanup supervisor_pilot 2640575 2424218
[2026-01-08 13:33:29] 2026-01-08 12:32:05,402 [wrapper] Test setup, not cleaning
[2026-01-08 13:33:29] 2026-01-08 12:32:05,405 [wrapper] apfmon messages muted
[2026-01-08 13:33:29] 2026-01-08 12:32:05,408 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:33:29] 2026-01-08 12:32:05,410 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:33:29]  *** Error codes and diagnostics ***
[2026-01-08 13:33:29]     "exeErrorCode": 0,
[2026-01-08 13:33:29]     "exeErrorDiag": "",
[2026-01-08 13:33:29]     "pilotErrorCode": 0,
[2026-01-08 13:33:29]     "pilotErrorDiag": "",
[2026-01-08 13:33:29]  *** Listing of results directory ***
[2026-01-08 13:33:29] total 441372
[2026-01-08 13:33:29] -rwx------ 1 boinc boinc     36322 Jan  7 21:58 runpilot2-wrapper.sh
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc       100 Jan  8 09:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:33:29] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 09:26 run_atlas
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc       105 Jan  8 09:26 job.xml
[2026-01-08 13:33:29] -rw-r--r-- 2 boinc boinc 226953148 Jan  8 09:26 EVNT.47898824._000557.pool.root.1
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc      6638 Jan  8 09:26 init_data.xml
[2026-01-08 13:33:29] -rw-r--r-- 2 boinc boinc     15847 Jan  8 09:26 start_atlas.sh
[2026-01-08 13:33:29] drwxrwx--x 2 boinc boinc      4096 Jan  8 09:26 shared
[2026-01-08 13:33:29] -rw-r--r-- 2 boinc boinc    592400 Jan  8 09:26 input.tar.gz
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc         0 Jan  8 09:26 boinc_lockfile
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc      2519 Jan  8 09:26 pandaJob.out
[2026-01-08 13:33:29] -rw------- 1 boinc boinc    989819 Jan  8 09:26 agis_schedconf.cvmfs.json
[2026-01-08 13:33:29] drwx------ 5 boinc boinc      4096 Jan  8 09:26 pilot3
[2026-01-08 13:33:29] -rw------- 1 boinc boinc 216160591 Jan  8 13:30 HITS.47898826._012973.pool.root.1
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc       529 Jan  8 13:30 boinc_task_state.xml
[2026-01-08 13:33:29] -rw------- 1 boinc boinc        95 Jan  8 13:30 pilot_heartbeat.json
[2026-01-08 13:33:29] -rw------- 1 boinc boinc      1034 Jan  8 13:30 memory_monitor_summary.json
[2026-01-08 13:33:29] -rw------- 1 boinc boinc   1516240 Jan  8 13:30 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:33:29] -rw------- 1 boinc boinc    404923 Jan  8 13:30 log.47898826._012973.job.log.tgz.1
[2026-01-08 13:33:29] -rw------- 1 boinc boinc      7831 Jan  8 13:31 heartbeat.json
[2026-01-08 13:33:29] -rw------- 1 boinc boinc      4833 Jan  8 13:32 pilotlog.txt
[2026-01-08 13:33:29] -rw------- 1 boinc boinc   2068148 Jan  8 13:32 log.47898826._012973.job.log.1
[2026-01-08 13:33:29] -rw------- 1 boinc boinc       357 Jan  8 13:32 output.list
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc       620 Jan  8 13:32 runtime_log
[2026-01-08 13:33:29] -rw------- 1 boinc boinc   2488320 Jan  8 13:32 result.tar.gz
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc      9206 Jan  8 13:32 runtime_log.err
[2026-01-08 13:33:29] -rw------- 1 boinc boinc       665 Jan  8 13:32 CbBNDmTnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwgdKDmXEYjOm.diag
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc        26 Jan  8 13:33 wrapper_checkpoint.txt
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc      8192 Jan  8 13:33 boinc_mmap_file
[2026-01-08 13:33:29] -rw-r--r-- 1 boinc boinc     21163 Jan  8 13:33 stderr.txt
[2026-01-08 13:33:29] HITS file was successfully produced:
[2026-01-08 13:33:29] -rw------- 1 boinc boinc 216160591 Jan  8 13:30 shared/HITS.pool.root.1
[2026-01-08 13:33:29]  *** Contents of shared directory: ***
[2026-01-08 13:33:29] total 435764
[2026-01-08 13:33:29] -rw-r--r-- 2 boinc boinc 226953148 Jan  8 09:26 ATLAS.root_0
[2026-01-08 13:33:29] -rw-r--r-- 2 boinc boinc     15847 Jan  8 09:26 start_atlas.sh
[2026-01-08 13:33:29] -rw-r--r-- 2 boinc boinc    592400 Jan  8 09:26 input.tar.gz
[2026-01-08 13:33:29] -rw------- 1 boinc boinc 216160591 Jan  8 13:30 HITS.pool.root.1
[2026-01-08 13:33:29] -rw------- 1 boinc boinc   2488320 Jan  8 13:32 result.tar.gz
13:33:31 (2420407): run_atlas exited; CPU time 57447.928636
13:33:31 (2420407): called boinc_finish(0)

</stderr_txt>
]]>

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