Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:22:57 (303868): wrapper (7.7.26015): starting
23:22:57 (303868): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 23:22:57] Arguments: --nthreads 8
[2026-01-07 23:22:57] Threads: 8
[2026-01-07 23:22:57] Checking for CVMFS
[2026-01-07 23:22:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 23:22:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 23:22:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 23:23:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 23:23:20] 2.13.3.0 10228 22131 199116 154891 2 65 24735448 32935936 23217 16776704 0 92333153 99.846 51162084 33428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 23:23:20] CVMFS is ok
[2026-01-07 23:23:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 23:23:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 23:23:20] Further information can be found at the LHC@home message board.
[2026-01-07 23:23:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 23:23:20] Checking for apptainer binary...
[2026-01-07 23:23:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 23:23:20] Running /usr/bin/apptainer --version
[2026-01-07 23:23:22] apptainer version 1.4.5-2.el9
[2026-01-07 23:23:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 23:23:24] c-8-1.aglt2.org
[2026-01-07 23:23:24] apptainer works
[2026-01-07 23:23:24] Set ATHENA_PROC_NUMBER=8
[2026-01-07 23:23:24] Set ATHENA_CORE_NUMBER=8
[2026-01-07 23:23:24] Starting ATLAS job with PandaID=6962317506
[2026-01-07 23:23:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:12:14]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:12:14] 2026-01-08 22:10:53,961 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:12:14] 2026-01-08 22:10:53,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:12:14] 2026-01-08 22:10:53,961 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:12:14] 2026-01-08 22:10:54,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:12:14] 2026-01-08 22:10:54,144 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:12:14] 2026-01-08 22:10:54,174 | INFO     | sum of square deviations: 353849305982.808
[2026-01-08 17:12:14] 2026-01-08 22:10:54,311 | INFO     | sum of deviations: 203458324149.46573
[2026-01-08 17:12:14] 2026-01-08 22:10:54,311 | INFO     | mean x: 1767878326.479426
[2026-01-08 17:12:14] 2026-01-08 22:10:54,311 | INFO     | mean y: 2520322.510047847
[2026-01-08 17:12:14] 2026-01-08 22:10:54,323 | INFO     | intersect: -1013984600.6991044
[2026-01-08 17:12:14] 2026-01-08 22:10:54,324 | INFO     | chi2: 4.659795449722261
[2026-01-08 17:12:14] 2026-01-08 22:10:54,326 | INFO     | sum of square deviations: 348794315952.5762
[2026-01-08 17:12:14] 2026-01-08 22:10:54,843 | INFO     | sum of deviations: 346635679738.23804
[2026-01-08 17:12:14] 2026-01-08 22:10:54,843 | INFO     | mean x: 1767878173.9798076
[2026-01-08 17:12:14] 2026-01-08 22:10:54,843 | INFO     | mean y: 2524629.392307692
[2026-01-08 17:12:14] 2026-01-08 22:10:54,843 | INFO     | intersect: -1754412409.1550932
[2026-01-08 17:12:14] 2026-01-08 22:10:54,942 | INFO     | chi2: 3.0491973283785985
[2026-01-08 17:12:14] 2026-01-08 22:10:54,942 | INFO     | current chi2=3.0491973283785985 (change=34.563708616000724 %)
[2026-01-08 17:12:14] 2026-01-08 22:10:54,944 | INFO     | sum of square deviations: 343787761752.38257
[2026-01-08 17:12:14] 2026-01-08 22:10:55,381 | INFO     | sum of deviations: 344632690363.94214
[2026-01-08 17:12:14] 2026-01-08 22:10:55,382 | INFO     | mean x: 1767878021.4811594
[2026-01-08 17:12:14] 2026-01-08 22:10:55,382 | INFO     | mean y: 2524568.381642512
[2026-01-08 17:12:14] 2026-01-08 22:10:55,382 | INFO     | intersect: -1769698374.2639086
[2026-01-08 17:12:14] 2026-01-08 22:10:55,384 | INFO     | chi2: 3.04934843383385
[2026-01-08 17:12:14] 2026-01-08 22:10:55,384 | INFO     | current chi2=3.04934843383385 (change=-0.004955581386783591 %)
[2026-01-08 17:12:14] 2026-01-08 22:10:55,384 | INFO     | right removable region: 1034
[2026-01-08 17:12:14] 2026-01-08 22:10:55,433 | INFO     | sum of square deviations: 348794328457.5351
[2026-01-08 17:12:14] 2026-01-08 22:10:55,616 | INFO     | monitor loop #2863: job 0:6962317506 is in state 'finished'
[2026-01-08 17:12:14] 2026-01-08 22:10:55,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:12:14] 2026-01-08 22:10:55,723 | INFO     | sum of deviations: -64262270887.98074
[2026-01-08 17:12:14] 2026-01-08 22:10:55,724 | INFO     | mean x: 1767878478.978846
[2026-01-08 17:12:14] 2026-01-08 22:10:55,724 | INFO     | mean y: 2528392.6826923075
[2026-01-08 17:12:14] 2026-01-08 22:10:55,724 | INFO     | intersect: 328244370.392466
[2026-01-08 17:12:14] 2026-01-08 22:10:55,753 | INFO     | chi2: 2.2146364460354637
[2026-01-08 17:12:14] 2026-01-08 22:10:55,753 | INFO     | current chi2=2.2146364460354637 (change=52.4735265757757 %)
[2026-01-08 17:12:14] 2026-01-08 22:10:55,754 | INFO     | sum of square deviations: 343787660980.3029
[2026-01-08 17:12:14] 2026-01-08 22:10:56,227 | INFO     | sum of deviations: -129711995729.0947
[2026-01-08 17:12:14] 2026-01-08 22:10:56,228 | INFO     | mean x: 1767878631.479227
[2026-01-08 17:12:14] 2026-01-08 22:10:56,228 | INFO     | mean y: 2530385.181642512
[2026-01-08 17:12:14] 2026-01-08 22:10:56,228 | INFO     | intersect: 669555678.7657824
[2026-01-08 17:12:14] 2026-01-08 22:10:56,229 | INFO     | chi2: 2.070868180821524
[2026-01-08 17:12:14] 2026-01-08 22:10:56,230 | INFO     | current chi2=2.070868180821524 (change=6.491732106698906 %)
[2026-01-08 17:12:14] 2026-01-08 22:10:56,230 | INFO     | left removable region: 20
[2026-01-08 17:12:14] 2026-01-08 22:10:56,321 | INFO     | sum of square deviations: 323283151928.4783
[2026-01-08 17:12:14] 2026-01-08 22:10:56,752 | INFO     | sum of deviations: -6186538722.0868635
[2026-01-08 17:12:14] 2026-01-08 22:10:56,782 | INFO     | mean x: 1767878600.9773176
[2026-01-08 17:12:14] 2026-01-08 22:10:56,782 | INFO     | mean y: 2535373.909270217
[2026-01-08 17:12:14] 2026-01-08 22:10:56,782 | INFO     | intersect: 36366550.55937474
[2026-01-08 17:12:14] 2026-01-08 22:10:56,783 | INFO     | chi2: 0.41997217964036554
[2026-01-08 17:12:14] 2026-01-08 22:10:56,783 | INFO     | current memory leak: -0.02 B/s (using 1014 data points, chi2=0.42)
[2026-01-08 17:12:14] 2026-01-08 22:10:56,784 | INFO     | could have reported an average CPU frequency of 2600 MHz (38 samples)
[2026-01-08 17:12:14] 2026-01-08 22:10:56,785 | INFO     | ..............................
[2026-01-08 17:12:14] 2026-01-08 22:10:56,785 | INFO     | . Timing measurements:
[2026-01-08 17:12:14] 2026-01-08 22:10:56,785 | INFO     | . get job = 1 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,785 | INFO     | . initial setup = 11 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,785 | INFO     | . payload setup = 54 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,802 | INFO     | . stage-in = 0 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,803 | INFO     | . payload execution = 63748 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,803 | INFO     | . stage-out = 8 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,803 | INFO     | . log creation = 2 s
[2026-01-08 17:12:14] 2026-01-08 22:10:56,803 | INFO     | ..............................
[2026-01-08 17:12:14] 2026-01-08 22:10:58,038 | INFO     | 
[2026-01-08 17:12:14] 2026-01-08 22:10:58,043 | INFO     | job summary report
[2026-01-08 17:12:14] 2026-01-08 22:10:58,043 | INFO     | --------------------------------------------------
[2026-01-08 17:12:14] 2026-01-08 22:10:58,043 | INFO     | PanDA job id: 6962317506
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | task id: 47898826
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | errors: (none)
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | pilot state: finished 
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | transexitcode: 0
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | exeerrorcode: 0
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | exeerrordiag: 
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | exitcode: 0
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | exitmsg: OK
[2026-01-08 17:12:14] 2026-01-08 22:10:58,044 | INFO     | cpuconsumptiontime: 74415 s
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | nevents: 400
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | neventsw: 0
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | pid: 321843
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | pgrp: 321843
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | corecount: 8
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | event service: False
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | sizes: {0: 2283140, 1: 2283741, 2: 2283825, 3: 2283853, 4: 2283881, 5: 2283881, 6: 2284236, 7: 2284264, 18: 2284292, 29: 2284320, 40: 2284348, 47: 2284918, 51: 228
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | --------------------------------------------------
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | 
[2026-01-08 17:12:14] 2026-01-08 22:10:58,045 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 17:12:14] 2026-01-08 22:10:58,310 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,310 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,310 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,310 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:12:14] 2026-01-08 22:10:58,312 | INFO     | job 6962317506 has completed (purged errors)
[2026-01-08 17:12:14] 2026-01-08 22:10:58,313 | INFO     | overall cleanup function is called
[2026-01-08 17:12:14] 2026-01-08 22:10:59,138 | INFO     | PID=311379 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 17:12:14] 2026-01-08 22:10:59,138 | INFO     | .. there are 34 such processes running
[2026-01-08 17:12:14] 2026-01-08 22:10:59,486 | INFO     | --- collectZombieJob: --- 10, [321843]
[2026-01-08 17:12:14] 2026-01-08 22:10:59,487 | INFO     | zombie collector waiting for pid 321843
[2026-01-08 17:12:14] 2026-01-08 22:10:59,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:12:14] 2026-01-08 22:10:59,487 | INFO     | collected zombie processes
[2026-01-08 17:12:14] 2026-01-08 22:10:59,487 | INFO     | will attempt to kill all subprocesses of pid=321843
[2026-01-08 17:12:14] 2026-01-08 22:11:02,690 | INFO     | process IDs to be killed: [321843] (in reverse order)
[2026-01-08 17:12:14] 2026-01-08 22:11:04,455 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:12:14] 2026-01-08 22:11:04,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:12:14] 2026-01-08 22:11:04,544 | INFO     | did not find any defunct processes belonging to 321843
[2026-01-08 17:12:14] 2026-01-08 22:11:04,585 | INFO     | did not find any defunct processes belonging to 321843
[2026-01-08 17:12:14] 2026-01-08 22:11:04,585 | INFO     | ready for new job
[2026-01-08 17:12:14] 2026-01-08 22:11:04,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:12:14] 2026-01-08 22:11:04,613 | INFO     | ***************************************
[2026-01-08 17:12:14] 2026-01-08 22:11:04,614 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:12:14] 2026-01-08 22:11:04,614 | INFO     | ***************************************
[2026-01-08 17:12:14] 2026-01-08 22:11:04,614 | INFO     | 
[2026-01-08 17:12:14] 2026-01-08 22:11:04,669 | INFO     | architecture information:
[2026-01-08 17:12:14] 2026-01-08 22:11:04,692 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:12:14] 2026-01-08 22:11:04,762 | INFO     | cat /etc/os-release:
[2026-01-08 17:12:14] NAME="CentOS Linux"
[2026-01-08 17:12:14] VERSION="7 (Core)"
[2026-01-08 17:12:14] ID="centos"
[2026-01-08 17:12:14] ID_LIKE="rhel fedora"
[2026-01-08 17:12:14] VERSION_ID="7"
[2026-01-08 17:12:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:12:14] ANSI_COLOR="0;31"
[2026-01-08 17:12:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:12:14] HOME_URL="https://www.centos.org/"
[2026-01-08 17:12:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:12:14] 
[2026-01-08 17:12:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:12:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:12:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:12:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:12:14] 
[2026-01-08 17:12:14] 2026-01-08 22:11:04,763 | INFO     | ***************************************
[2026-01-08 17:12:14] 2026-01-08 22:11:05,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 17:12:14] 2026-01-08 22:11:05,476 | INFO     | sufficient remaining disk space (76018614272 B)
[2026-01-08 17:12:14] 2026-01-08 22:11:05,476 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:12:14] 2026-01-08 22:11:05,476 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:12:14] 2026-01-08 22:11:05,477 | INFO     | update_server=False
[2026-01-08 17:12:14] 2026-01-08 22:11:05,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:12:14] 2026-01-08 22:11:05,477 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:12:14] 2026-01-08 22:11:05,697 | INFO     | all payload control threads have been joined
[2026-01-08 17:12:14] 2026-01-08 22:11:05,832 | INFO     | all data control threads have been joined
[2026-01-08 17:12:14] 2026-01-08 22:11:05,869 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 17:12:14] 2026-01-08 22:11:05,870 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 17:12:14] 2026-01-08 22:11:05,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:12:14] 2026-01-08 22:11:05,870 | INFO     | will abort loop
[2026-01-08 17:12:14] 2026-01-08 22:11:05,948 | INFO     | all job control threads have been joined
[2026-01-08 17:12:14] 2026-01-08 22:11:06,482 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:06,528 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:06,703 | INFO     | [payload] control thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:06,838 | INFO     | [data] control thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:06,875 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:06,954 | INFO     | [job] control thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,181 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,198 | INFO     | [job] validate thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,208 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,335 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:12:14] 2026-01-08 22:11:07,437 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,484 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,718 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,725 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:07,748 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:08,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:12:14] 2026-01-08 22:11:08,341 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:12,198 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:12:14] 2026-01-08 22:11:37,375 | INFO     | PID=311379 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 17:12:14] 2026-01-08 22:11:37,375 | INFO     | .. there are 34 such processes running
[2026-01-08 17:12:14] 2026-01-08 22:11:37,376 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:12:14] 2026-01-08 22:11:37,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:12:14] 2026-01-08 22:11:37,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:12:14] 2026-01-08 22:12:02,831 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:12:14] 2026-01-08 22:12:04,913 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140577008650048)>', '<ExcThread(monitor, started 140576661944064)>']
[2026-01-08 17:12:14] 2026-01-08 22:12:05,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:12:14] 2026-01-08 22:12:05,562 | INFO     | [monitor] control thread has ended
[2026-01-08 17:12:14] 2026-01-08 22:12:09,950 | INFO     | all workflow threads have been joined
[2026-01-08 17:12:14] 2026-01-08 22:12:09,951 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:12:14] 2026-01-08 22:12:09,951 | INFO     | traces error code: 0
[2026-01-08 17:12:14] 2026-01-08 22:12:09,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:12:14] 2026-01-08 22:12:11,834 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:12:14] 2026-01-08 22:12:11,847 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:12:14] 2026-01-08 22:12:11,850 [wrapper] pilotpid: 311379
[2026-01-08 17:12:14] 2026-01-08 22:12:11,853 [wrapper] Pilot exit status: 0
[2026-01-08 17:12:14] 2026-01-08 22:12:11,956 [wrapper] pandaids: 6962317506
[2026-01-08 17:12:14] 2026-01-08 22:12:12,809 [wrapper] cleanup supervisor_pilot 1438973 311380
[2026-01-08 17:12:14] 2026-01-08 22:12:12,874 [wrapper] Test setup, not cleaning
[2026-01-08 17:12:14] 2026-01-08 22:12:12,915 [wrapper] apfmon messages muted
[2026-01-08 17:12:14] 2026-01-08 22:12:12,984 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:12:14] 2026-01-08 22:12:13,052 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:12:14]  *** Error codes and diagnostics ***
[2026-01-08 17:12:14]     "exeErrorCode": 0,
[2026-01-08 17:12:14]     "exeErrorDiag": "",
[2026-01-08 17:12:14]     "pilotErrorCode": 0,
[2026-01-08 17:12:14]     "pilotErrorDiag": "",
[2026-01-08 17:12:14]  *** Listing of results directory ***
[2026-01-08 17:12:14] total 448728
[2026-01-08 17:12:14] -rwx------. 1 boincer umatlas     36322 Jan  7 15:56 runpilot2-wrapper.sh
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 15:59 queuedata.json
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas       100 Jan  7 23:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:12:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 23:22 run_atlas
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas       105 Jan  7 23:22 job.xml
[2026-01-08 17:12:14] -rw-r--r--. 2 boincer umatlas 223853483 Jan  7 23:22 EVNT.47898824._000542.pool.root.1
[2026-01-08 17:12:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 23:22 start_atlas.sh
[2026-01-08 17:12:14] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 23:22 shared
[2026-01-08 17:12:14] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 23:22 input.tar.gz
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas         0 Jan  7 23:22 boinc_lockfile
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas      2518 Jan  7 23:23 pandaJob.out
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas        57 Jan  7 23:23 setup.sh.local
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas    989835 Jan  7 23:24 agis_schedconf.cvmfs.json
[2026-01-08 17:12:14] drwx------. 5 boincer umatlas      4096 Jan  7 23:24 pilot3
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas 216586334 Jan  8 17:07 HITS.47898826._012740.pool.root.1
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas       531 Jan  8 17:07 boinc_task_state.xml
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas      1053 Jan  8 17:09 memory_monitor_summary.json
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas   1516240 Jan  8 17:09 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas    996811 Jan  8 17:10 log.47898826._012740.job.log.tgz.1
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas        95 Jan  8 17:10 pilot_heartbeat.json
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas      7832 Jan  8 17:10 heartbeat.json
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas      6659 Jan  8 17:11 init_data.xml
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 17:12 boinc_mmap_file
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas        28 Jan  8 17:12 wrapper_checkpoint.txt
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas      5009 Jan  8 17:12 pilotlog.txt
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas   6575426 Jan  8 17:12 log.47898826._012740.job.log.1
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas       357 Jan  8 17:12 output.list
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas       620 Jan  8 17:12 runtime_log
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas   7587840 Jan  8 17:12 result.tar.gz
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas      9328 Jan  8 17:12 runtime_log.err
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas       658 Jan  8 17:12 e1gNDmMlpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8fdKDmqcfSnm.diag
[2026-01-08 17:12:14] -rw-r--r--. 1 boincer umatlas     21281 Jan  8 17:12 stderr.txt
[2026-01-08 17:12:14] HITS file was successfully produced:
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas 216586334 Jan  8 17:07 shared/HITS.pool.root.1
[2026-01-08 17:12:14]  *** Contents of shared directory: ***
[2026-01-08 17:12:14] total 438132
[2026-01-08 17:12:14] -rw-r--r--. 2 boincer umatlas 223853483 Jan  7 23:22 ATLAS.root_0
[2026-01-08 17:12:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 23:22 start_atlas.sh
[2026-01-08 17:12:14] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 23:22 input.tar.gz
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas 216586334 Jan  8 17:07 HITS.pool.root.1
[2026-01-08 17:12:14] -rw-------. 1 boincer umatlas   7587840 Jan  8 17:12 result.tar.gz
17:12:16 (303868): run_atlas exited; CPU time 77127.630457
17:12:16 (303868): called boinc_finish(0)

</stderr_txt>
]]>

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