Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:51:51 (21467): wrapper (7.7.26015): starting
05:51:51 (21467): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 05:51:51] Arguments: --nthreads 8
[2026-01-08 05:51:51] Threads: 8
[2026-01-08 05:51:51] Checking for CVMFS
[2026-01-08 05:51:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:51:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:51:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:51:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:51:54] 2.11.2.0 10325 33517 96424 154891 0 61 15335930 25165825 96 130560 0 14292761 99.833 9539492 4178 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 05:51:54] CVMFS is ok
[2026-01-08 05:51:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:51:54] Checking for apptainer binary...
[2026-01-08 05:51:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:51:54] Running /usr/bin/apptainer --version
[2026-01-08 05:51:54] apptainer version 1.3.2-1.el7
[2026-01-08 05:51:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:52:09] cg-vwn405.simple-grid.lan
[2026-01-08 05:52:09] apptainer works
[2026-01-08 05:52:09] Set ATHENA_PROC_NUMBER=8
[2026-01-08 05:52:09] Set ATHENA_CORE_NUMBER=8
[2026-01-08 05:52:09] Starting ATLAS job with PandaID=6962317452
[2026-01-08 05:52:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 12:00:25]  *** The last 200 lines of the pilot log: ***
[2026-01-08 12:00:26] 2026-01-08 10:59:15,918 | INFO     | time since job start (21757s) is within the limit (174528.0s)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,800 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 12:00:26] 2026-01-08 10:59:16,801 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 12:00:26] 2026-01-08 10:59:16,802 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6962317452/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,803 | INFO     | extracted standard info from prmon json
[2026-01-08 12:00:26] 2026-01-08 10:59:16,803 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 12:00:26] 2026-01-08 10:59:16,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 12:00:26] 2026-01-08 10:59:16,803 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 12:00:26] 2026-01-08 10:59:16,803 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 12:00:26] 2026-01-08 10:59:16,811 | INFO     | fitting pss+swap vs Time
[2026-01-08 12:00:26] 2026-01-08 10:59:16,812 | INFO     | sum of square deviations: 12955770358.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,816 | INFO     | sum of deviations: 148071386885.00012
[2026-01-08 12:00:26] 2026-01-08 10:59:16,816 | INFO     | mean x: 1767859273.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,816 | INFO     | mean y: 2437464.0547550432
[2026-01-08 12:00:26] 2026-01-08 10:59:16,816 | INFO     | intersect: -20202410811.059914
[2026-01-08 12:00:26] 2026-01-08 10:59:16,817 | INFO     | chi2: 6.5890386359395015
[2026-01-08 12:00:26] 2026-01-08 10:59:16,818 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 12:00:26] 2026-01-08 10:59:16,822 | INFO     | sum of deviations: 192846721107.5
[2026-01-08 12:00:26] 2026-01-08 10:59:16,822 | INFO     | mean x: 1767859120.5
[2026-01-08 12:00:26] 2026-01-08 10:59:16,822 | INFO     | mean y: 2449721.0380116957
[2026-01-08 12:00:26] 2026-01-08 10:59:16,822 | INFO     | intersect: -27483255438.873203
[2026-01-08 12:00:26] 2026-01-08 10:59:16,823 | INFO     | chi2: 4.996854486725229
[2026-01-08 12:00:26] 2026-01-08 10:59:16,823 | INFO     | current chi2=4.996854486725229 (change=24.164134362937308 %)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,823 | INFO     | right removable region: 341
[2026-01-08 12:00:26] 2026-01-08 10:59:16,824 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 12:00:26] 2026-01-08 10:59:16,828 | INFO     | sum of deviations: 35371037757.99998
[2026-01-08 12:00:26] 2026-01-08 10:59:16,828 | INFO     | mean x: 1767859425.5
[2026-01-08 12:00:26] 2026-01-08 10:59:16,828 | INFO     | mean y: 2468571.1169590643
[2026-01-08 12:00:26] 2026-01-08 10:59:16,828 | INFO     | intersect: -5038830949.879501
[2026-01-08 12:00:26] 2026-01-08 10:59:16,829 | INFO     | chi2: 2.56491904578068
[2026-01-08 12:00:26] 2026-01-08 10:59:16,829 | INFO     | current chi2=2.56491904578068 (change=61.072939657835846 %)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,830 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,833 | INFO     | sum of deviations: -14263256374.999992
[2026-01-08 12:00:26] 2026-01-08 10:59:16,834 | INFO     | mean x: 1767859578.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,834 | INFO     | mean y: 2482639.275964392
[2026-01-08 12:00:26] 2026-01-08 10:59:16,834 | INFO     | intersect: 2127204820.6489067
[2026-01-08 12:00:26] 2026-01-08 10:59:16,834 | INFO     | chi2: 1.6929733385370562
[2026-01-08 12:00:26] 2026-01-08 10:59:16,835 | INFO     | current chi2=1.6929733385370562 (change=33.99505760924439 %)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,835 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,839 | INFO     | sum of deviations: -21095836241.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,839 | INFO     | mean x: 1767859730.5
[2026-01-08 12:00:26] 2026-01-08 10:59:16,839 | INFO     | mean y: 2484633.43373494
[2026-01-08 12:00:26] 2026-01-08 10:59:16,839 | INFO     | intersect: 3289152462.7330885
[2026-01-08 12:00:26] 2026-01-08 10:59:16,840 | INFO     | chi2: 1.6753712180180713
[2026-01-08 12:00:26] 2026-01-08 10:59:16,840 | INFO     | current chi2=1.6753712180180713 (change=1.0397163451017708 %)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,840 | INFO     | left removable region: 30
[2026-01-08 12:00:26] 2026-01-08 10:59:16,841 | INFO     | sum of square deviations: 9327281860.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,844 | INFO     | sum of deviations: 15120831097.000002
[2026-01-08 12:00:26] 2026-01-08 10:59:16,845 | INFO     | mean x: 1767860005.0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,845 | INFO     | mean y: 2501024.3665594854
[2026-01-08 12:00:26] 2026-01-08 10:59:16,845 | INFO     | intersect: -2863447806.1694336
[2026-01-08 12:00:26] 2026-01-08 10:59:16,845 | INFO     | chi2: 0.0023040469066411746
[2026-01-08 12:00:26] 2026-01-08 10:59:16,846 | INFO     | current memory leak: 1.62 B/s (using 311 data points, chi2=0.00)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,846 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | ..............................
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . Timing measurements:
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . get job = 0 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . initial setup = 9 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . payload setup = 140 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . stage-in = 0 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . payload execution = 21290 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,847 | INFO     | . stage-out = 3 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,848 | INFO     | . log creation = 1 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,848 | INFO     | ..............................
[2026-01-08 12:00:26] 2026-01-08 10:59:16,988 | INFO     | 
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | job summary report
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | --------------------------------------------------
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | PanDA job id: 6962317452
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | task id: 47898826
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | errors: (none)
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 12:00:26] 2026-01-08 10:59:16,989 | INFO     | pilot state: finished 
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | transexitcode: 0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | exeerrorcode: 0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | exeerrordiag: 
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | exitcode: 0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | exitmsg: OK
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | cpuconsumptiontime: 81021 s
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | nevents: 400
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | neventsw: 0
[2026-01-08 12:00:26] 2026-01-08 10:59:16,990 | INFO     | pid: 31702
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | pgrp: 31702
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | corecount: 8
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | event service: False
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | sizes: {0: 2283797, 1: 2283996, 12: 2283996, 23: 2284024, 33: 2284052, 44: 2284108, 55: 2284264, 66: 2284292, 76: 2284320, 87: 2284376, 98: 2284404, 107: 2284974, 
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | --------------------------------------------------
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | 
[2026-01-08 12:00:26] 2026-01-08 10:59:16,991 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-08 12:00:26] 2026-01-08 10:59:17,572 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,572 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,572 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,572 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | job 6962317452 has completed (purged errors)
[2026-01-08 12:00:26] 2026-01-08 10:59:17,574 | INFO     | overall cleanup function is called
[2026-01-08 12:00:26] 2026-01-08 10:59:18,583 | INFO     | --- collectZombieJob: --- 10, [31702]
[2026-01-08 12:00:26] 2026-01-08 10:59:18,584 | INFO     | zombie collector waiting for pid 31702
[2026-01-08 12:00:26] 2026-01-08 10:59:18,584 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 12:00:26] 2026-01-08 10:59:18,584 | INFO     | collected zombie processes
[2026-01-08 12:00:26] 2026-01-08 10:59:18,584 | INFO     | will attempt to kill all subprocesses of pid=31702
[2026-01-08 12:00:26] 2026-01-08 10:59:18,679 | INFO     | process IDs to be killed: [31702] (in reverse order)
[2026-01-08 12:00:26] 2026-01-08 10:59:19,385 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 12:00:26] 2026-01-08 10:59:19,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 12:00:26] 2026-01-08 10:59:19,388 | INFO     | did not find any defunct processes belonging to 31702
[2026-01-08 12:00:26] 2026-01-08 10:59:19,390 | INFO     | did not find any defunct processes belonging to 31702
[2026-01-08 12:00:26] 2026-01-08 10:59:19,390 | INFO     | ready for new job
[2026-01-08 12:00:26] 2026-01-08 10:59:19,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 12:00:26] 2026-01-08 10:59:19,393 | INFO     | ***************************************
[2026-01-08 12:00:26] 2026-01-08 10:59:19,393 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 12:00:26] 2026-01-08 10:59:19,393 | INFO     | ***************************************
[2026-01-08 12:00:26] 2026-01-08 10:59:19,393 | INFO     | 
[2026-01-08 12:00:26] 2026-01-08 10:59:19,394 | INFO     | pilot is running in a VM
[2026-01-08 12:00:26] 2026-01-08 10:59:19,394 | INFO     | architecture information:
[2026-01-08 12:00:26] 2026-01-08 10:59:19,410 | INFO     | executing command: cat /etc/os-release
[2026-01-08 12:00:26] 2026-01-08 10:59:19,659 | INFO     | cat /etc/os-release:
[2026-01-08 12:00:26] NAME="CentOS Linux"
[2026-01-08 12:00:26] VERSION="7 (Core)"
[2026-01-08 12:00:26] ID="centos"
[2026-01-08 12:00:26] ID_LIKE="rhel fedora"
[2026-01-08 12:00:26] VERSION_ID="7"
[2026-01-08 12:00:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 12:00:26] ANSI_COLOR="0;31"
[2026-01-08 12:00:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 12:00:26] HOME_URL="https://www.centos.org/"
[2026-01-08 12:00:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 12:00:26] 
[2026-01-08 12:00:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 12:00:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 12:00:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 12:00:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 12:00:26] 
[2026-01-08 12:00:26] 2026-01-08 10:59:19,659 | INFO     | ***************************************
[2026-01-08 12:00:26] 2026-01-08 10:59:20,163 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-08 12:00:26] 2026-01-08 10:59:20,360 | INFO     | sufficient remaining disk space (496963158016 B)
[2026-01-08 12:00:26] 2026-01-08 10:59:20,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 12:00:26] 2026-01-08 10:59:20,360 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 12:00:26] 2026-01-08 10:59:20,361 | INFO     | update_server=False
[2026-01-08 12:00:26] 2026-01-08 10:59:20,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 12:00:26] 2026-01-08 10:59:20,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 12:00:26] 2026-01-08 10:59:20,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 12:00:26] 2026-01-08 10:59:20,460 | INFO     | all data control threads have been joined
[2026-01-08 12:00:26] 2026-01-08 10:59:20,967 | INFO     | all payload control threads have been joined
[2026-01-08 12:00:26] 2026-01-08 10:59:21,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 12:00:26] 2026-01-08 10:59:21,331 | INFO     | aborting loop
[2026-01-08 12:00:26] 2026-01-08 10:59:21,367 | INFO     | [job] retrieve thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,467 | INFO     | [data] control thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,539 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,559 | INFO     | [job] validate thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,572 | INFO     | [data] copytool_in thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,708 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,781 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,973 | INFO     | [payload] control thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:21,976 | INFO     | all job control threads have been joined
[2026-01-08 12:00:26] 2026-01-08 10:59:22,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 12:00:26] 2026-01-08 10:59:22,281 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:22,336 | INFO     | [job] job monitor thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:22,367 | INFO     | [data] copytool_out thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:22,463 | INFO     | [payload] failed_post thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:22,476 | INFO     | [payload] validate_post thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:22,982 | INFO     | [job] control thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:23,008 | INFO     | [job] queue monitor thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:24,370 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 12:00:26] 2026-01-08 10:59:49,049 | INFO     | PID=25205 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 12:00:26] 2026-01-08 10:59:49,049 | INFO     | .. there are 2 such processes running
[2026-01-08 12:00:26] 2026-01-08 10:59:49,050 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 12:00:26] 2026-01-08 10:59:49,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 12:00:26] 2026-01-08 10:59:49,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 12:00:26] 2026-01-08 11:00:15,072 | INFO     | [monitor] cgroup control has ended
[2026-01-08 12:00:26] 2026-01-08 11:00:15,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140541171390272)>', '<ExcThread(monitor, started 140540515444480)>']
[2026-01-08 12:00:26] 2026-01-08 11:00:16,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 12:00:26] 2026-01-08 11:00:16,211 | INFO     | [monitor] control thread has ended
[2026-01-08 12:00:26] 2026-01-08 11:00:20,518 | INFO     | all workflow threads have been joined
[2026-01-08 12:00:26] 2026-01-08 11:00:20,519 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 12:00:26] 2026-01-08 11:00:20,519 | INFO     | traces error code: 0
[2026-01-08 12:00:26] 2026-01-08 11:00:20,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 12:00:26] 2026-01-08 11:00:20,888 [wrapper] ==== pilot stdout END ====
[2026-01-08 12:00:26] 2026-01-08 11:00:20,955 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 12:00:26] 2026-01-08 11:00:21,028 [wrapper] pilotpid: 25205
[2026-01-08 12:00:26] 2026-01-08 11:00:21,126 [wrapper] Pilot exit status: 0
[2026-01-08 12:00:26] 2026-01-08 11:00:21,394 [wrapper] pandaids: 6962317452
[2026-01-08 12:00:26] 2026-01-08 11:00:22,291 [wrapper] cleanup supervisor_pilot 30990 25206
[2026-01-08 12:00:26] 2026-01-08 11:00:22,394 [wrapper] Test setup, not cleaning
[2026-01-08 12:00:26] 2026-01-08 11:00:22,494 [wrapper] apfmon messages muted
[2026-01-08 12:00:26] 2026-01-08 11:00:22,583 [wrapper] ==== wrapper stdout END ====
[2026-01-08 12:00:26] 2026-01-08 11:00:22,620 [wrapper] ==== wrapper stderr END ====
[2026-01-08 12:00:26]  *** Error codes and diagnostics ***
[2026-01-08 12:00:26]     "exeErrorCode": 0,
[2026-01-08 12:00:26]     "exeErrorDiag": "",
[2026-01-08 12:00:26]     "pilotErrorCode": 0,
[2026-01-08 12:00:26]     "pilotErrorDiag": "",
[2026-01-08 12:00:26]  *** Listing of results directory ***
[2026-01-08 12:00:26] total 444116
[2026-01-08 12:00:26] -rwx------. 1 boinc boinc     36322 Jan  7 21:56 runpilot2-wrapper.sh
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc      5112 Jan  7 21:59 queuedata.json
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc       100 Jan  8 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 12:00:26] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 05:51 run_atlas
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc       105 Jan  8 05:51 job.xml
[2026-01-08 12:00:26] -rw-r--r--. 2 boinc boinc 225123556 Jan  8 05:51 EVNT.47898824._000539.pool.root.1
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc      6390 Jan  8 05:51 init_data.xml
[2026-01-08 12:00:26] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:51 start_atlas.sh
[2026-01-08 12:00:26] drwxrwx--x. 2 boinc boinc        68 Jan  8 05:51 shared
[2026-01-08 12:00:26] -rw-r--r--. 2 boinc boinc    592398 Jan  8 05:51 input.tar.gz
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc         0 Jan  8 05:51 boinc_lockfile
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc      2518 Jan  8 05:52 pandaJob.out
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc    989835 Jan  8 05:56 agis_schedconf.cvmfs.json
[2026-01-08 12:00:26] drwx------. 5 boinc boinc      4096 Jan  8 05:56 pilot3
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc 218808318 Jan  8 11:55 HITS.47898826._012686.pool.root.1
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc       531 Jan  8 11:56 boinc_task_state.xml
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc      1012 Jan  8 11:57 memory_monitor_summary.json
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc   1516240 Jan  8 11:57 agis_ddmendpoints.agis.ALL.json
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc    565404 Jan  8 11:57 log.47898826._012686.job.log.tgz.1
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc        95 Jan  8 11:59 pilot_heartbeat.json
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc      7774 Jan  8 11:59 heartbeat.json
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc        28 Jan  8 12:00 wrapper_checkpoint.txt
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc      8192 Jan  8 12:00 boinc_mmap_file
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc      4884 Jan  8 12:00 pilotlog.txt
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc   2905688 Jan  8 12:00 log.47898826._012686.job.log.1
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc       357 Jan  8 12:00 output.list
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc       620 Jan  8 12:00 runtime_log
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc   3491840 Jan  8 12:00 result.tar.gz
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc      8817 Jan  8 12:00 runtime_log.err
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc       657 Jan  8 12:00 qaTMDmMlpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIfdKDmBxQPwm.diag
[2026-01-08 12:00:26] -rw-r--r--. 1 boinc boinc     20781 Jan  8 12:00 stderr.txt
[2026-01-08 12:00:26] HITS file was successfully produced:
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc 218808318 Jan  8 11:55 shared/HITS.pool.root.1
[2026-01-08 12:00:26]  *** Contents of shared directory: ***
[2026-01-08 12:00:26] total 437536
[2026-01-08 12:00:26] -rw-r--r--. 2 boinc boinc 225123556 Jan  8 05:51 ATLAS.root_0
[2026-01-08 12:00:26] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:51 start_atlas.sh
[2026-01-08 12:00:26] -rw-r--r--. 2 boinc boinc    592398 Jan  8 05:51 input.tar.gz
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc 218808318 Jan  8 11:55 HITS.pool.root.1
[2026-01-08 12:00:26] -rw-------. 1 boinc boinc   3491840 Jan  8 12:00 result.tar.gz
12:00:27 (21467): run_atlas exited; CPU time 81244.960879
12:00:27 (21467): called boinc_finish(0)

</stderr_txt>
]]>

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