Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:26:16 (3040606): wrapper (7.7.26015): starting
02:26:16 (3040606): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 02:26:16] Arguments: --nthreads 2
[2026-01-08 02:26:16] Threads: 2
[2026-01-08 02:26:16] Checking for CVMFS
[2026-01-08 02:26:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 02:26:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 02:26:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 02:26:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 02:26:16] 2.9.2.0 2915532 586 52348 154886 3 57 19429090 36864001 0 130560 0 265397 99.980 23318 12044 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 02:26:16] CVMFS is ok
[2026-01-08 02:26:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 02:26:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 02:26:16] Further information can be found at the LHC@home message board.
[2026-01-08 02:26:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 02:26:16] Checking for apptainer binary...
[2026-01-08 02:26:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 02:26:16] Running /usr/bin/apptainer --version
[2026-01-08 02:26:16] apptainer version 1.4.1-1.1
[2026-01-08 02:26:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 02:26:16] thA369
[2026-01-08 02:26:16] apptainer works
[2026-01-08 02:26:17] Set ATHENA_PROC_NUMBER=2
[2026-01-08 02:26:17] Set ATHENA_CORE_NUMBER=2
[2026-01-08 02:26:17] Starting ATLAS job with PandaID=6962319323
[2026-01-08 02:26:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 05:39:11]  *** The last 200 lines of the pilot log: ***
[2026-01-08 05:39:11] 2026-01-08 04:38:40,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 05:39:11] 2026-01-08 04:38:40,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 05:39:11] 2026-01-08 04:38:40,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 05:39:11] 2026-01-08 04:38:40,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 05:39:11] 2026-01-08 04:38:40,036 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 05:39:11] 2026-01-08 04:38:40,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 05:39:11] 2026-01-08 04:38:40,036 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 05:39:11] 2026-01-08 04:38:40,036 | INFO     | job 6962319323 has completed (purged errors)
[2026-01-08 05:39:11] 2026-01-08 04:38:40,037 | INFO     | overall cleanup function is called
[2026-01-08 05:39:11] 2026-01-08 04:38:41,044 | INFO     | --- collectZombieJob: --- 10, [3050759]
[2026-01-08 05:39:11] 2026-01-08 04:38:41,044 | INFO     | zombie collector waiting for pid 3050759
[2026-01-08 05:39:11] 2026-01-08 04:38:41,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 05:39:11] 2026-01-08 04:38:41,044 | INFO     | collected zombie processes
[2026-01-08 05:39:11] 2026-01-08 04:38:41,044 | INFO     | will attempt to kill all subprocesses of pid=3050759
[2026-01-08 05:39:11] 2026-01-08 04:38:41,110 | INFO     | process IDs to be killed: [3050759] (in reverse order)
[2026-01-08 05:39:11] 2026-01-08 04:38:41,140 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 05:39:11] 2026-01-08 04:38:41,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 05:39:11] 2026-01-08 04:38:41,142 | INFO     | did not find any defunct processes belonging to 3050759
[2026-01-08 05:39:11] 2026-01-08 04:38:41,144 | INFO     | did not find any defunct processes belonging to 3050759
[2026-01-08 05:39:11] 2026-01-08 04:38:41,144 | INFO     | ready for new job
[2026-01-08 05:39:11] 2026-01-08 04:38:41,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 05:39:11] 2026-01-08 04:38:41,144 | INFO     | ***************************************
[2026-01-08 05:39:11] 2026-01-08 04:38:41,144 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 05:39:11] 2026-01-08 04:38:41,144 | INFO     | ***************************************
[2026-01-08 05:39:11] 2026-01-08 04:38:41,145 | INFO     | 
[2026-01-08 05:39:11] 2026-01-08 04:38:41,145 | INFO     | architecture information:
[2026-01-08 05:39:11] 2026-01-08 04:38:41,145 | INFO     | executing command: cat /etc/os-release
[2026-01-08 05:39:11] 2026-01-08 04:38:41,153 | INFO     | cat /etc/os-release:
[2026-01-08 05:39:11] NAME="CentOS Linux"
[2026-01-08 05:39:11] VERSION="7 (Core)"
[2026-01-08 05:39:11] ID="centos"
[2026-01-08 05:39:11] ID_LIKE="rhel fedora"
[2026-01-08 05:39:11] VERSION_ID="7"
[2026-01-08 05:39:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 05:39:11] ANSI_COLOR="0;31"
[2026-01-08 05:39:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 05:39:11] HOME_URL="https://www.centos.org/"
[2026-01-08 05:39:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 05:39:11] 
[2026-01-08 05:39:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 05:39:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 05:39:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 05:39:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 05:39:11] 
[2026-01-08 05:39:11] 2026-01-08 04:38:41,154 | INFO     | ***************************************
[2026-01-08 05:39:11] 2026-01-08 04:38:41,657 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 05:39:11] 2026-01-08 04:38:41,669 | INFO     | sufficient remaining disk space (341878767616 B)
[2026-01-08 05:39:11] 2026-01-08 04:38:41,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 05:39:11] 2026-01-08 04:38:41,669 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 05:39:11] 2026-01-08 04:38:41,669 | INFO     | update_server=False
[2026-01-08 05:39:11] 2026-01-08 04:38:41,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 05:39:11] 2026-01-08 04:38:41,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:39:11] 2026-01-08 04:38:41,670 | INFO     | aborting loop
[2026-01-08 05:39:11] 2026-01-08 04:38:41,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:39:11] 2026-01-08 04:38:41,829 | INFO     | all payload control threads have been joined
[2026-01-08 05:39:11] 2026-01-08 04:38:41,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 05:39:11] 2026-01-08 04:38:42,264 | INFO     | all data control threads have been joined
[2026-01-08 05:39:11] 2026-01-08 04:38:42,675 | INFO     | [job] job monitor thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:42,675 | INFO     | [job] retrieve thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:42,676 | INFO     | [job] queue monitor thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:42,745 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:42,835 | INFO     | [payload] control thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:42,840 | INFO     | [data] copytool_in thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:42,962 | INFO     | [payload] validate_post thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:43,163 | INFO     | all job control threads have been joined
[2026-01-08 05:39:11] 2026-01-08 04:38:43,219 | INFO     | [payload] failed_post thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:43,270 | INFO     | [data] control thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:43,732 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:43,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 05:39:11] 2026-01-08 04:38:43,938 | INFO     | [data] copytool_out thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:44,104 | INFO     | [job] validate thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:44,155 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:44,168 | INFO     | [job] control thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:47,648 | INFO     | [monitor] cgroup control has ended
[2026-01-08 05:39:11] 2026-01-08 04:38:47,818 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:52,678 | INFO     | job.realtimelogging is not enabled
[2026-01-08 05:39:11] 2026-01-08 04:38:53,683 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 05:39:11] 2026-01-08 04:38:54,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140095680571200)>', '<ExcThread(monitor, started 140095030019840)>']
[2026-01-08 05:39:11] 2026-01-08 04:38:59,123 | INFO     | all workflow threads have been joined
[2026-01-08 05:39:11] 2026-01-08 04:38:59,123 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 05:39:11] 2026-01-08 04:38:59,124 | INFO     | traces error code: 0
[2026-01-08 05:39:11] 2026-01-08 04:38:59,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 05:39:11] 2026-01-08 04:39:11,647 | INFO     | PID=3044325 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 05:39:11] 2026-01-08 04:39:11,648 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 05:39:11] 2026-01-08 04:39:11,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 05:39:11] 2026-01-08 04:39:11,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 05:39:11] 2026-01-08 04:39:11,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 05:39:11] 2026-01-08 04:39:11,648 | INFO     | [monitor] control thread has ended
[2026-01-08 05:39:11] 2026-01-08 04:39:11,691 [wrapper] ==== pilot stdout END ====
[2026-01-08 05:39:11] 2026-01-08 04:39:11,693 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 05:39:11] 2026-01-08 04:39:11,695 [wrapper] pilotpid: 3044325
[2026-01-08 05:39:11] 2026-01-08 04:39:11,697 [wrapper] Pilot exit status: 0
[2026-01-08 05:39:11] 2026-01-08 04:39:11,702 [wrapper] pandaids: 6962319323
[2026-01-08 05:39:11] 2026-01-08 04:39:11,720 [wrapper] cleanup supervisor_pilot 3076554 3044326
[2026-01-08 05:39:11] 2026-01-08 04:39:11,723 [wrapper] Test setup, not cleaning
[2026-01-08 05:39:11] 2026-01-08 04:39:11,725 [wrapper] apfmon messages muted
[2026-01-08 05:39:11] 2026-01-08 04:39:11,727 [wrapper] ==== wrapper stdout END ====
[2026-01-08 05:39:11] 2026-01-08 04:39:11,729 [wrapper] ==== wrapper stderr END ====
[2026-01-08 05:39:11]  *** Error codes and diagnostics ***
[2026-01-08 05:39:11]     "exeErrorCode": 0,
[2026-01-08 05:39:11]     "exeErrorDiag": "",
[2026-01-08 05:39:11]     "pilotErrorCode": 0,
[2026-01-08 05:39:11]     "pilotErrorDiag": "",
[2026-01-08 05:39:11]  *** Listing of results directory ***
[2026-01-08 05:39:11] total 445588
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc    579449 Jan  7 21:55 pilot3.tar.gz
[2026-01-08 05:39:11] -rwx------ 1 boinc boinc     36322 Jan  7 21:56 runpilot2-wrapper.sh
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc      5112 Jan  7 21:56 queuedata.json
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc       100 Jan  8 02:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 05:39:11] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 02:26 run_atlas
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc       105 Jan  8 02:26 job.xml
[2026-01-08 05:39:11] -rw-r--r-- 2 boinc boinc 224266531 Jan  8 02:26 EVNT.47898824._000567.pool.root.1
[2026-01-08 05:39:11] -rw-r--r-- 2 boinc boinc    592402 Jan  8 02:26 input.tar.gz
[2026-01-08 05:39:11] -rw-r--r-- 2 boinc boinc     15847 Jan  8 02:26 start_atlas.sh
[2026-01-08 05:39:11] drwxrwx--x 2 boinc boinc      4096 Jan  8 02:26 shared
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc         0 Jan  8 02:26 boinc_setup_complete
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc      6205 Jan  8 02:26 init_data.xml
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc         0 Jan  8 02:26 boinc_lockfile
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc      2519 Jan  8 02:26 pandaJob.out
[2026-01-08 05:39:11] -rw------- 1 boinc boinc    989843 Jan  8 02:26 agis_schedconf.cvmfs.json
[2026-01-08 05:39:11] drwx------ 5 boinc boinc      4096 Jan  8 02:26 pilot3
[2026-01-08 05:39:11] -rw------- 1 boinc boinc 224185019 Jan  8 05:38 HITS.47898826._013231.pool.root.1
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc       531 Jan  8 05:38 boinc_task_state.xml
[2026-01-08 05:39:11] -rw------- 1 boinc boinc      1016 Jan  8 05:38 memory_monitor_summary.json
[2026-01-08 05:39:11] -rw------- 1 boinc boinc   1516240 Jan  8 05:38 agis_ddmendpoints.agis.ALL.json
[2026-01-08 05:39:11] -rw------- 1 boinc boinc    336969 Jan  8 05:38 log.47898826._013231.job.log.tgz.1
[2026-01-08 05:39:11] -rw------- 1 boinc boinc      7762 Jan  8 05:38 heartbeat.json
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc      8192 Jan  8 05:38 boinc_mmap_file
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc        28 Jan  8 05:38 wrapper_checkpoint.txt
[2026-01-08 05:39:11] -rw------- 1 boinc boinc        95 Jan  8 05:39 pilot_heartbeat.json
[2026-01-08 05:39:11] -rw------- 1 boinc boinc       747 Jan  8 05:39 pilotlog.txt
[2026-01-08 05:39:11] -rw------- 1 boinc boinc   1629495 Jan  8 05:39 log.47898826._013231.job.log.1
[2026-01-08 05:39:11] -rw------- 1 boinc boinc       357 Jan  8 05:39 output.list
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc       620 Jan  8 05:39 runtime_log
[2026-01-08 05:39:11] -rw------- 1 boinc boinc   1986560 Jan  8 05:39 result.tar.gz
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc      8898 Jan  8 05:39 runtime_log.err
[2026-01-08 05:39:11] -rw------- 1 boinc boinc       664 Jan  8 05:39 ZxkNDmwkpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNbdKDmIcgOEo.diag
[2026-01-08 05:39:11] -rw-r--r-- 1 boinc boinc     11613 Jan  8 05:39 stderr.txt
[2026-01-08 05:39:11] HITS file was successfully produced:
[2026-01-08 05:39:11] -rw------- 1 boinc boinc 224185019 Jan  8 05:38 shared/HITS.pool.root.1
[2026-01-08 05:39:11]  *** Contents of shared directory: ***
[2026-01-08 05:39:11] total 440488
[2026-01-08 05:39:11] -rw-r--r-- 2 boinc boinc 224266531 Jan  8 02:26 ATLAS.root_0
[2026-01-08 05:39:11] -rw-r--r-- 2 boinc boinc    592402 Jan  8 02:26 input.tar.gz
[2026-01-08 05:39:11] -rw-r--r-- 2 boinc boinc     15847 Jan  8 02:26 start_atlas.sh
[2026-01-08 05:39:11] -rw------- 1 boinc boinc 224185019 Jan  8 05:38 HITS.pool.root.1
[2026-01-08 05:39:11] -rw------- 1 boinc boinc   1986560 Jan  8 05:39 result.tar.gz
05:39:13 (3040606): run_atlas exited; CPU time 22719.042331
05:39:13 (3040606): called boinc_finish(0)

</stderr_txt>
]]>

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