Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:12:45 (1566165): wrapper (7.7.26015): starting
22:12:45 (1566165): wrapper: running run_atlas (--nthreads 3)
[2026-01-07 22:12:45] Arguments: --nthreads 3
[2026-01-07 22:12:45] Threads: 3
[2026-01-07 22:12:45] Checking for CVMFS
[2026-01-07 22:12:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 22:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 22:12:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 22:12:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 22:12:47] 2.9.2.0 1566360 0 30072 154879 3 1 22439494 36864000 0 130560 0 0 0.000 1335 20859 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-07 22:12:47] CVMFS is ok
[2026-01-07 22:12:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 22:12:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 22:12:47] Further information can be found at the LHC@home message board.
[2026-01-07 22:12:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 22:12:47] Checking for apptainer binary...
[2026-01-07 22:12:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 22:12:47] Running /usr/bin/apptainer --version
[2026-01-07 22:12:47] apptainer version 1.4.1-1.1
[2026-01-07 22:12:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 22:12:47] magicA161a
[2026-01-07 22:12:47] apptainer works
[2026-01-07 22:12:47] Set ATHENA_PROC_NUMBER=3
[2026-01-07 22:12:47] Set ATHENA_CORE_NUMBER=3
[2026-01-07 22:12:47] Starting ATLAS job with PandaID=6962314812
[2026-01-07 22:12:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 00:05:07]  *** The last 200 lines of the pilot log: ***
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | job 6962314812 has completed (purged errors)
[2026-01-08 00:05:07] 2026-01-07 23:04:15,513 | INFO     | overall cleanup function is called
[2026-01-08 00:05:07] 2026-01-07 23:04:16,520 | INFO     | --- collectZombieJob: --- 10, [1576884]
[2026-01-08 00:05:07] 2026-01-07 23:04:16,520 | INFO     | zombie collector waiting for pid 1576884
[2026-01-08 00:05:07] 2026-01-07 23:04:16,520 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 00:05:07] 2026-01-07 23:04:16,520 | INFO     | collected zombie processes
[2026-01-08 00:05:07] 2026-01-07 23:04:16,520 | INFO     | will attempt to kill all subprocesses of pid=1576884
[2026-01-08 00:05:07] 2026-01-07 23:04:16,563 | INFO     | process IDs to be killed: [1576884] (in reverse order)
[2026-01-08 00:05:07] 2026-01-07 23:04:16,587 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 00:05:07] 2026-01-07 23:04:16,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 00:05:07] 2026-01-07 23:04:16,588 | INFO     | did not find any defunct processes belonging to 1576884
[2026-01-08 00:05:07] 2026-01-07 23:04:16,589 | INFO     | did not find any defunct processes belonging to 1576884
[2026-01-08 00:05:07] 2026-01-07 23:04:16,589 | INFO     | ready for new job
[2026-01-08 00:05:07] 2026-01-07 23:04:16,589 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 00:05:07] 2026-01-07 23:04:16,590 | INFO     | ***************************************
[2026-01-08 00:05:07] 2026-01-07 23:04:16,590 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 00:05:07] 2026-01-07 23:04:16,590 | INFO     | ***************************************
[2026-01-08 00:05:07] 2026-01-07 23:04:16,590 | INFO     | 
[2026-01-08 00:05:07] 2026-01-07 23:04:16,590 | INFO     | architecture information:
[2026-01-08 00:05:07] 2026-01-07 23:04:16,590 | INFO     | executing command: cat /etc/os-release
[2026-01-08 00:05:07] 2026-01-07 23:04:16,598 | INFO     | cat /etc/os-release:
[2026-01-08 00:05:07] NAME="CentOS Linux"
[2026-01-08 00:05:07] VERSION="7 (Core)"
[2026-01-08 00:05:07] ID="centos"
[2026-01-08 00:05:07] ID_LIKE="rhel fedora"
[2026-01-08 00:05:07] VERSION_ID="7"
[2026-01-08 00:05:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 00:05:07] ANSI_COLOR="0;31"
[2026-01-08 00:05:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 00:05:07] HOME_URL="https://www.centos.org/"
[2026-01-08 00:05:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 00:05:07] 
[2026-01-08 00:05:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 00:05:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 00:05:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 00:05:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 00:05:07] 
[2026-01-08 00:05:07] 2026-01-07 23:04:16,599 | INFO     | ***************************************
[2026-01-08 00:05:07] 2026-01-07 23:04:17,102 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 00:05:07] 2026-01-07 23:04:17,114 | INFO     | sufficient remaining disk space (383889965056 B)
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | INFO     | update_server=False
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 00:05:07] 2026-01-07 23:04:17,115 | INFO     | aborting loop
[2026-01-08 00:05:07] 2026-01-07 23:04:17,662 | INFO     | all job control threads have been joined
[2026-01-08 00:05:07] 2026-01-07 23:04:17,710 | INFO     | all payload control threads have been joined
[2026-01-08 00:05:07] 2026-01-07 23:04:17,727 | INFO     | all data control threads have been joined
[2026-01-08 00:05:07] 2026-01-07 23:04:18,120 | INFO     | [job] job monitor thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,120 | INFO     | [job] retrieve thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,123 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,130 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,548 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,668 | INFO     | [job] control thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,716 | INFO     | [payload] control thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,732 | INFO     | [data] control thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:18,759 | INFO     | [payload] failed_post thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:19,010 | INFO     | [data] copytool_in thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:19,076 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:19,121 | INFO     | [data] copytool_out thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:19,295 | INFO     | [payload] validate_post thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:19,507 | INFO     | [job] validate thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:20,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 00:05:07] 2026-01-07 23:04:21,119 | INFO     | [job] queue monitor thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:21,122 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 00:05:07] 2026-01-07 23:04:46,916 | INFO     | PID=1570430 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 00:05:07] 2026-01-07 23:04:46,916 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 00:05:07] 2026-01-07 23:04:46,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 00:05:07] 2026-01-07 23:04:46,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 00:05:07] 2026-01-07 23:05:02,032 | INFO     | [monitor] cgroup control has ended
[2026-01-08 00:05:07] 2026-01-07 23:05:02,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543308568384)>', '<ExcThread(monitor, started 140542604211968)>']
[2026-01-08 00:05:07] 2026-01-07 23:05:03,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 00:05:07] 2026-01-07 23:05:03,001 | INFO     | [monitor] control thread has ended
[2026-01-08 00:05:07] 2026-01-07 23:05:07,575 | INFO     | all workflow threads have been joined
[2026-01-08 00:05:07] 2026-01-07 23:05:07,576 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 00:05:07] 2026-01-07 23:05:07,576 | INFO     | traces error code: 0
[2026-01-08 00:05:07] 2026-01-07 23:05:07,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 00:05:07] 2026-01-07 23:05:07,792 [wrapper] ==== pilot stdout END ====
[2026-01-08 00:05:07] 2026-01-07 23:05:07,795 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 00:05:07] 2026-01-07 23:05:07,797 [wrapper] pilotpid: 1570430
[2026-01-08 00:05:07] 2026-01-07 23:05:07,799 [wrapper] Pilot exit status: 0
[2026-01-08 00:05:07] 2026-01-07 23:05:07,807 [wrapper] pandaids: 6962314812
[2026-01-08 00:05:07] 2026-01-07 23:05:07,824 [wrapper] cleanup supervisor_pilot 1591441 1570431
[2026-01-08 00:05:07] 2026-01-07 23:05:07,826 [wrapper] Test setup, not cleaning
[2026-01-08 00:05:07] 2026-01-07 23:05:07,828 [wrapper] apfmon messages muted
[2026-01-08 00:05:07] 2026-01-07 23:05:07,830 [wrapper] ==== wrapper stdout END ====
[2026-01-08 00:05:07] 2026-01-07 23:05:07,833 [wrapper] ==== wrapper stderr END ====
[2026-01-08 00:05:07]  *** Error codes and diagnostics ***
[2026-01-08 00:05:07]     "exeErrorCode": 0,
[2026-01-08 00:05:07]     "exeErrorDiag": "",
[2026-01-08 00:05:07]     "pilotErrorCode": 0,
[2026-01-08 00:05:07]     "pilotErrorDiag": "",
[2026-01-08 00:05:07]  *** Listing of results directory ***
[2026-01-08 00:05:07] total 440720
[2026-01-08 00:05:07] -rwx------ 1 boinc boinc     36322 Jan  7 21:54 runpilot2-wrapper.sh
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc      5112 Jan  7 21:55 queuedata.json
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc    579449 Jan  7 21:55 pilot3.tar.gz
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc       100 Jan  7 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 00:05:07] -rwxr-xr-x 1 boinc boinc      7986 Jan  7 22:12 run_atlas
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc       105 Jan  7 22:12 job.xml
[2026-01-08 00:05:07] -rw-r--r-- 2 boinc boinc 223353965 Jan  7 22:12 EVNT.47898824._000288.pool.root.1
[2026-01-08 00:05:07] -rw-r--r-- 2 boinc boinc    592395 Jan  7 22:12 input.tar.gz
[2026-01-08 00:05:07] -rw-r--r-- 2 boinc boinc     15847 Jan  7 22:12 start_atlas.sh
[2026-01-08 00:05:07] drwxrwx--x 2 boinc boinc      4096 Jan  7 22:12 shared
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc         0 Jan  7 22:12 boinc_setup_complete
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc      6447 Jan  7 22:12 init_data.xml
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc         0 Jan  7 22:12 boinc_lockfile
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc      2516 Jan  7 22:12 pandaJob.out
[2026-01-08 00:05:07] -rw------- 1 boinc boinc    989785 Jan  7 22:12 agis_schedconf.cvmfs.json
[2026-01-08 00:05:07] -rw------- 1 boinc boinc   1516240 Jan  7 22:12 agis_ddmendpoints.agis.ALL.json
[2026-01-08 00:05:07] drwx------ 5 boinc boinc      4096 Jan  7 22:12 pilot3
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc       529 Jan  8 00:03 boinc_task_state.xml
[2026-01-08 00:05:07] -rw------- 1 boinc boinc 221541775 Jan  8 00:03 HITS.47898826._011504.pool.root.1
[2026-01-08 00:05:07] -rw------- 1 boinc boinc      1011 Jan  8 00:04 memory_monitor_summary.json
[2026-01-08 00:05:07] -rw------- 1 boinc boinc    281158 Jan  8 00:04 log.47898826._011504.job.log.tgz.1
[2026-01-08 00:05:07] -rw------- 1 boinc boinc      7760 Jan  8 00:04 heartbeat.json
[2026-01-08 00:05:07] -rw------- 1 boinc boinc        95 Jan  8 00:04 pilot_heartbeat.json
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc        27 Jan  8 00:04 wrapper_checkpoint.txt
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc      8192 Jan  8 00:04 boinc_mmap_file
[2026-01-08 00:05:07] -rw------- 1 boinc boinc      4752 Jan  8 00:05 pilotlog.txt
[2026-01-08 00:05:07] -rw------- 1 boinc boinc    965247 Jan  8 00:05 log.47898826._011504.job.log.1
[2026-01-08 00:05:07] -rw------- 1 boinc boinc       357 Jan  8 00:05 output.list
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc       620 Jan  8 00:05 runtime_log
[2026-01-08 00:05:07] -rw------- 1 boinc boinc   1269760 Jan  8 00:05 result.tar.gz
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc      8917 Jan  8 00:05 runtime_log.err
[2026-01-08 00:05:07] -rw------- 1 boinc boinc       663 Jan  8 00:05 9P7MDmEjpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCaiKDmyT31in.diag
[2026-01-08 00:05:07] -rw-r--r-- 1 boinc boinc     12444 Jan  8 00:05 stderr.txt
[2026-01-08 00:05:07] HITS file was successfully produced:
[2026-01-08 00:05:07] -rw------- 1 boinc boinc 221541775 Jan  8 00:03 shared/HITS.pool.root.1
[2026-01-08 00:05:07]  *** Contents of shared directory: ***
[2026-01-08 00:05:07] total 436316
[2026-01-08 00:05:07] -rw-r--r-- 2 boinc boinc 223353965 Jan  7 22:12 ATLAS.root_0
[2026-01-08 00:05:07] -rw-r--r-- 2 boinc boinc    592395 Jan  7 22:12 input.tar.gz
[2026-01-08 00:05:07] -rw-r--r-- 2 boinc boinc     15847 Jan  7 22:12 start_atlas.sh
[2026-01-08 00:05:07] -rw------- 1 boinc boinc 221541775 Jan  8 00:03 HITS.pool.root.1
[2026-01-08 00:05:07] -rw------- 1 boinc boinc   1269760 Jan  8 00:05 result.tar.gz
00:05:09 (1566165): run_atlas exited; CPU time 19346.972123
00:05:09 (1566165): called boinc_finish(0)

</stderr_txt>
]]>

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