Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:25:35 (538442): wrapper (7.7.26015): starting
17:25:35 (538442): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 17:25:35] Arguments: --nthreads 8
[2026-01-07 17:25:35] Threads: 8
[2026-01-07 17:25:35] Checking for CVMFS
[2026-01-07 17:25:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 17:25:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 17:25:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 17:25:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 17:25:38] 2.13.3.0 7586 19225 155448 154882 1 65 27544258 40960000 9122 16776704 0 9035755 99.452 15444833 38985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-07 17:25:38] CVMFS is ok
[2026-01-07 17:25:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 17:25:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 17:25:38] Further information can be found at the LHC@home message board.
[2026-01-07 17:25:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 17:25:38] Checking for apptainer binary...
[2026-01-07 17:25:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 17:25:38] Running /usr/bin/apptainer --version
[2026-01-07 17:25:38] apptainer version 1.4.5-2.el9
[2026-01-07 17:25:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 17:25:39] c-211-6.aglt2.org
[2026-01-07 17:25:39] apptainer works
[2026-01-07 17:25:39] Set ATHENA_PROC_NUMBER=8
[2026-01-07 17:25:39] Set ATHENA_CORE_NUMBER=8
[2026-01-07 17:25:39] Starting ATLAS job with PandaID=6962314155
[2026-01-07 17:25:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 05:42:38]  *** The last 200 lines of the pilot log: ***
[2026-01-08 05:42:38] 2026-01-08 10:41:59,790 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2629.8737291666666
[2026-01-08 05:42:38] 2026-01-08 10:41:59,872 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962314155/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 05:42:38] 2026-01-08 10:41:59,903 | INFO     | extracted standard info from prmon json
[2026-01-08 05:42:38] 2026-01-08 10:41:59,904 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 05:42:38] 2026-01-08 10:41:59,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 05:42:38] 2026-01-08 10:41:59,904 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 05:42:38] 2026-01-08 10:41:59,905 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 05:42:38] 2026-01-08 10:42:00,086 | INFO     | fitting pss+swap vs Time
[2026-01-08 05:42:38] 2026-01-08 10:42:00,123 | INFO     | sum of square deviations: 115257565874.44244
[2026-01-08 05:42:38] 2026-01-08 10:42:00,139 | INFO     | sum of deviations: 142503615282.15726
[2026-01-08 05:42:38] 2026-01-08 10:42:00,139 | INFO     | mean x: 1767846898.2127955
[2026-01-08 05:42:38] 2026-01-08 10:42:00,139 | INFO     | mean y: 2501541.613351878
[2026-01-08 05:42:38] 2026-01-08 10:42:00,139 | INFO     | intersect: -2183251492.0322576
[2026-01-08 05:42:38] 2026-01-08 10:42:00,140 | INFO     | chi2: 4.736523651824647
[2026-01-08 05:42:38] 2026-01-08 10:42:00,142 | INFO     | sum of square deviations: 112869913416.41599
[2026-01-08 05:42:38] 2026-01-08 10:42:00,166 | INFO     | sum of deviations: 231814711284.25217
[2026-01-08 05:42:38] 2026-01-08 10:42:00,166 | INFO     | mean x: 1767846745.7184875
[2026-01-08 05:42:38] 2026-01-08 10:42:00,167 | INFO     | mean y: 2507221.344537815
[2026-01-08 05:42:38] 2026-01-08 10:42:00,167 | INFO     | intersect: -3628335317.1944532
[2026-01-08 05:42:38] 2026-01-08 10:42:00,168 | INFO     | chi2: 3.3650271623776424
[2026-01-08 05:42:38] 2026-01-08 10:42:00,168 | INFO     | current chi2=3.3650271623776424 (change=28.95576144581615 %)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,169 | INFO     | sum of square deviations: 110515557866.44054
[2026-01-08 05:42:38] 2026-01-08 10:42:00,185 | INFO     | sum of deviations: 229741790126.28357
[2026-01-08 05:42:38] 2026-01-08 10:42:00,186 | INFO     | mean x: 1767846593.2270803
[2026-01-08 05:42:38] 2026-01-08 10:42:00,186 | INFO     | mean y: 2507087.078984485
[2026-01-08 05:42:38] 2026-01-08 10:42:00,186 | INFO     | intersect: -3672525178.4005656
[2026-01-08 05:42:38] 2026-01-08 10:42:00,187 | INFO     | chi2: 3.365440174924382
[2026-01-08 05:42:38] 2026-01-08 10:42:00,187 | INFO     | current chi2=3.365440174924382 (change=-0.012273676461137977 %)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,187 | INFO     | right removable region: 708
[2026-01-08 05:42:38] 2026-01-08 10:42:00,189 | INFO     | sum of square deviations: 112869556688.41597
[2026-01-08 05:42:38] 2026-01-08 10:42:00,207 | INFO     | sum of deviations: -55909092224.163826
[2026-01-08 05:42:38] 2026-01-08 10:42:00,207 | INFO     | mean x: 1767847050.7184875
[2026-01-08 05:42:38] 2026-01-08 10:42:00,208 | INFO     | mean y: 2514201.9593837536
[2026-01-08 05:42:38] 2026-01-08 10:42:00,208 | INFO     | intersect: 878204039.8284817
[2026-01-08 05:42:38] 2026-01-08 10:42:00,209 | INFO     | chi2: 1.941140085139203
[2026-01-08 05:42:38] 2026-01-08 10:42:00,209 | INFO     | current chi2=1.941140085139203 (change=59.017620773593734 %)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,210 | INFO     | sum of square deviations: 110514801104.78987
[2026-01-08 05:42:38] 2026-01-08 10:42:00,235 | INFO     | sum of deviations: -104832584269.33435
[2026-01-08 05:42:38] 2026-01-08 10:42:00,235 | INFO     | mean x: 1767847203.2228491
[2026-01-08 05:42:38] 2026-01-08 10:42:00,236 | INFO     | mean y: 2517363.5021156557
[2026-01-08 05:42:38] 2026-01-08 10:42:00,236 | INFO     | intersect: 1679469129.7314992
[2026-01-08 05:42:38] 2026-01-08 10:42:00,237 | INFO     | chi2: 1.7074244841625021
[2026-01-08 05:42:38] 2026-01-08 10:42:00,237 | INFO     | current chi2=1.7074244841625021 (change=12.040120276015049 %)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,237 | INFO     | left removable region: 20
[2026-01-08 05:42:38] 2026-01-08 10:42:00,238 | INFO     | sum of square deviations: 100983018737.50023
[2026-01-08 05:42:38] 2026-01-08 10:42:00,250 | INFO     | sum of deviations: -10866628787.350304
[2026-01-08 05:42:38] 2026-01-08 10:42:00,251 | INFO     | mean x: 1767847172.7485466
[2026-01-08 05:42:38] 2026-01-08 10:42:00,251 | INFO     | mean y: 2522892.8997093025
[2026-01-08 05:42:38] 2026-01-08 10:42:00,251 | INFO     | intersect: 192758233.64508685
[2026-01-08 05:42:38] 2026-01-08 10:42:00,252 | INFO     | chi2: 0.3080050766891859
[2026-01-08 05:42:38] 2026-01-08 10:42:00,252 | INFO     | current memory leak: -0.11 B/s (using 688 data points, chi2=0.31)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,253 | INFO     | could have reported an average CPU frequency of 2616 MHz (27 samples)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | ..............................
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . Timing measurements:
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . get job = 1 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . initial setup = 6 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . payload setup = 54 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . stage-in = 0 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . payload execution = 43882 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . stage-out = 8 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,254 | INFO     | . log creation = 2 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,255 | INFO     | ..............................
[2026-01-08 05:42:38] 2026-01-08 10:42:00,452 | INFO     | PID=543897 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 05:42:38] 2026-01-08 10:42:00,452 | INFO     | .. there are 8 such processes running
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | 
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | job summary report
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | --------------------------------------------------
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | PanDA job id: 6962314155
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | task id: 47898826
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | errors: (none)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,453 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | pilot state: finished 
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | transexitcode: 0
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | exeerrorcode: 0
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | exeerrordiag: 
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | exitcode: 0
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | exitmsg: OK
[2026-01-08 05:42:38] 2026-01-08 10:42:00,454 | INFO     | cpuconsumptiontime: 80635 s
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | nevents: 400
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | neventsw: 0
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | pid: 551678
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | pgrp: 551678
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | corecount: 8
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | event service: False
[2026-01-08 05:42:38] 2026-01-08 10:42:00,455 | INFO     | sizes: {0: 2283735, 1: 2283819, 2: 2283847, 3: 2284018, 14: 2284046, 26: 2284074, 37: 2284230, 39: 2284520, 48: 2284548, 43942: 2328830, 43943: 2328829, 43952: 233
[2026-01-08 05:42:38] 2026-01-08 10:42:00,456 | INFO     | --------------------------------------------------
[2026-01-08 05:42:38] 2026-01-08 10:42:00,456 | INFO     | 
[2026-01-08 05:42:38] 2026-01-08 10:42:00,456 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 05:42:38] 2026-01-08 10:42:00,747 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,748 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,750 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,750 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 05:42:38] 2026-01-08 10:42:00,750 | INFO     | job 6962314155 has completed (purged errors)
[2026-01-08 05:42:38] 2026-01-08 10:42:00,750 | INFO     | overall cleanup function is called
[2026-01-08 05:42:38] 2026-01-08 10:42:01,799 | INFO     | --- collectZombieJob: --- 10, [551678]
[2026-01-08 05:42:38] 2026-01-08 10:42:01,799 | INFO     | zombie collector waiting for pid 551678
[2026-01-08 05:42:38] 2026-01-08 10:42:01,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 05:42:38] 2026-01-08 10:42:01,800 | INFO     | collected zombie processes
[2026-01-08 05:42:38] 2026-01-08 10:42:01,800 | INFO     | will attempt to kill all subprocesses of pid=551678
[2026-01-08 05:42:38] 2026-01-08 10:42:03,815 [wrapper] supervise_pilot (15 min periods counter: 50)
[2026-01-08 05:42:38] 2026-01-08 10:42:04,062 | INFO     | process IDs to be killed: [551678] (in reverse order)
[2026-01-08 05:42:38] 2026-01-08 10:42:04,682 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 05:42:38] 2026-01-08 10:42:04,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 05:42:38] 2026-01-08 10:42:04,772 | INFO     | did not find any defunct processes belonging to 551678
[2026-01-08 05:42:38] 2026-01-08 10:42:04,832 | INFO     | did not find any defunct processes belonging to 551678
[2026-01-08 05:42:38] 2026-01-08 10:42:04,832 | INFO     | ready for new job
[2026-01-08 05:42:38] 2026-01-08 10:42:04,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 05:42:38] 2026-01-08 10:42:04,874 | INFO     | ***************************************
[2026-01-08 05:42:38] 2026-01-08 10:42:04,874 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 05:42:38] 2026-01-08 10:42:04,874 | INFO     | ***************************************
[2026-01-08 05:42:38] 2026-01-08 10:42:04,874 | INFO     | 
[2026-01-08 05:42:38] 2026-01-08 10:42:04,913 | INFO     | architecture information:
[2026-01-08 05:42:38] 2026-01-08 10:42:04,942 | INFO     | executing command: cat /etc/os-release
[2026-01-08 05:42:38] 2026-01-08 10:42:05,203 | INFO     | cat /etc/os-release:
[2026-01-08 05:42:38] NAME="CentOS Linux"
[2026-01-08 05:42:38] VERSION="7 (Core)"
[2026-01-08 05:42:38] ID="centos"
[2026-01-08 05:42:38] ID_LIKE="rhel fedora"
[2026-01-08 05:42:38] VERSION_ID="7"
[2026-01-08 05:42:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 05:42:38] ANSI_COLOR="0;31"
[2026-01-08 05:42:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 05:42:38] HOME_URL="https://www.centos.org/"
[2026-01-08 05:42:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 05:42:38] 
[2026-01-08 05:42:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 05:42:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 05:42:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 05:42:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 05:42:38] 
[2026-01-08 05:42:38] 2026-01-08 10:42:05,204 | INFO     | ***************************************
[2026-01-08 05:42:38] 2026-01-08 10:42:05,707 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 05:42:38] 2026-01-08 10:42:05,889 | INFO     | sufficient remaining disk space (63674777600 B)
[2026-01-08 05:42:38] 2026-01-08 10:42:05,890 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 05:42:38] 2026-01-08 10:42:05,890 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 05:42:38] 2026-01-08 10:42:05,890 | INFO     | update_server=False
[2026-01-08 05:42:38] 2026-01-08 10:42:05,890 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 05:42:38] 2026-01-08 10:42:05,891 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:42:38] 2026-01-08 10:42:05,924 | INFO     | all job control threads have been joined
[2026-01-08 05:42:38] 2026-01-08 10:42:06,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 05:42:38] 2026-01-08 10:42:06,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:42:38] 2026-01-08 10:42:06,524 | INFO     | aborting loop
[2026-01-08 05:42:38] 2026-01-08 10:42:06,685 | INFO     | all payload control threads have been joined
[2026-01-08 05:42:38] 2026-01-08 10:42:06,814 | INFO     | all data control threads have been joined
[2026-01-08 05:42:38] 2026-01-08 10:42:06,896 | INFO     | [job] retrieve thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:06,897 | INFO     | [job] queue monitor thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:06,930 | INFO     | [job] control thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,016 | INFO     | [data] copytool_in thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,141 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,163 | INFO     | [payload] failed_post thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,303 | INFO     | [payload] validate_post thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,530 | INFO     | [job] job monitor thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,691 | INFO     | [payload] control thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,733 | INFO     | [job] validate thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,760 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:07,820 | INFO     | [data] control thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:08,059 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:08,154 | INFO     | [data] copytool_out thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:08,190 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:08,416 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 05:42:38] 2026-01-08 10:42:12,425 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 05:42:38] 2026-01-08 10:42:26,623 | INFO     | [monitor] cgroup control has ended
[2026-01-08 05:42:38] 2026-01-08 10:42:26,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790006032192)>', '<ExcThread(monitor, started 139789433038592)>']
[2026-01-08 05:42:38] 2026-01-08 10:42:31,815 | INFO     | all workflow threads have been joined
[2026-01-08 05:42:38] 2026-01-08 10:42:31,837 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 05:42:38] 2026-01-08 10:42:31,838 | INFO     | traces error code: 0
[2026-01-08 05:42:38] 2026-01-08 10:42:31,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 05:42:38] 2026-01-08 10:42:34,934 | INFO     | PID=543897 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 05:42:38] 2026-01-08 10:42:34,934 | INFO     | .. there are 8 such processes running
[2026-01-08 05:42:38] 2026-01-08 10:42:34,935 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 05:42:38] 2026-01-08 10:42:34,935 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 05:42:38] 2026-01-08 10:42:34,935 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 05:42:38] 2026-01-08 10:42:34,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 05:42:38] 2026-01-08 10:42:34,935 | INFO     | [monitor] control thread has ended
[2026-01-08 05:42:38] 2026-01-08 10:42:36,454 [wrapper] ==== pilot stdout END ====
[2026-01-08 05:42:38] 2026-01-08 10:42:36,491 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 05:42:38] 2026-01-08 10:42:36,517 [wrapper] pilotpid: 543897
[2026-01-08 05:42:38] 2026-01-08 10:42:36,545 [wrapper] Pilot exit status: 0
[2026-01-08 05:42:38] 2026-01-08 10:42:36,667 [wrapper] pandaids: 6962314155
[2026-01-08 05:42:38] 2026-01-08 10:42:37,219 [wrapper] cleanup supervisor_pilot 1604616 543898
[2026-01-08 05:42:38] 2026-01-08 10:42:37,261 [wrapper] Test setup, not cleaning
[2026-01-08 05:42:38] 2026-01-08 10:42:37,338 [wrapper] apfmon messages muted
[2026-01-08 05:42:38] 2026-01-08 10:42:37,373 [wrapper] ==== wrapper stdout END ====
[2026-01-08 05:42:38] 2026-01-08 10:42:37,416 [wrapper] ==== wrapper stderr END ====
[2026-01-08 05:42:38]  *** Error codes and diagnostics ***
[2026-01-08 05:42:38]     "exeErrorCode": 0,
[2026-01-08 05:42:38]     "exeErrorDiag": "",
[2026-01-08 05:42:38]     "pilotErrorCode": 0,
[2026-01-08 05:42:38]     "pilotErrorDiag": "",
[2026-01-08 05:42:38]  *** Listing of results directory ***
[2026-01-08 05:42:38] total 447004
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 15:49 pilot3.tar.gz
[2026-01-08 05:42:38] -rwx------. 1 boincer umatlas     36322 Jan  7 15:53 runpilot2-wrapper.sh
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 15:53 queuedata.json
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas       100 Jan  7 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 05:42:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 17:25 run_atlas
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas       105 Jan  7 17:25 job.xml
[2026-01-08 05:42:38] -rw-r--r--. 2 boincer umatlas 224382449 Jan  7 17:25 EVNT.47898824._000211.pool.root.1
[2026-01-08 05:42:38] -rw-r--r--. 2 boincer umatlas    592396 Jan  7 17:25 input.tar.gz
[2026-01-08 05:42:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 17:25 start_atlas.sh
[2026-01-08 05:42:38] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 17:25 shared
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas         0 Jan  7 17:25 boinc_lockfile
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 17:25 pandaJob.out
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas        57 Jan  7 17:25 setup.sh.local
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas    989785 Jan  7 17:27 agis_schedconf.cvmfs.json
[2026-01-08 05:42:38] drwx------. 5 boincer umatlas      4096 Jan  7 17:27 pilot3
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas 217284888 Jan  8 05:37 HITS.47898826._010993.pool.root.1
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas       531 Jan  8 05:37 boinc_task_state.xml
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas      6610 Jan  8 05:38 init_data.xml
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas      1040 Jan  8 05:40 memory_monitor_summary.json
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas   1516240 Jan  8 05:40 agis_ddmendpoints.agis.ALL.json
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas    804963 Jan  8 05:41 log.47898826._010993.job.log.tgz.1
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas      7820 Jan  8 05:42 heartbeat.json
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas        28 Jan  8 05:42 wrapper_checkpoint.txt
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 05:42 boinc_mmap_file
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas        95 Jan  8 05:42 pilot_heartbeat.json
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas       821 Jan  8 05:42 pilotlog.txt
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas   5272071 Jan  8 05:42 log.47898826._010993.job.log.1
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas       357 Jan  8 05:42 output.list
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas       620 Jan  8 05:42 runtime_log
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas   6092800 Jan  8 05:42 result.tar.gz
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas      9338 Jan  8 05:42 runtime_log.err
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas       657 Jan  8 05:42 PI8MDmQipx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmQdKDmDdnqvn.diag
[2026-01-08 05:42:38] -rw-r--r--. 1 boincer umatlas     21002 Jan  8 05:42 stderr.txt
[2026-01-08 05:42:38] HITS file was successfully produced:
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas 217284888 Jan  8 05:37 shared/HITS.pool.root.1
[2026-01-08 05:42:38]  *** Contents of shared directory: ***
[2026-01-08 05:42:38] total 437872
[2026-01-08 05:42:38] -rw-r--r--. 2 boincer umatlas 224382449 Jan  7 17:25 ATLAS.root_0
[2026-01-08 05:42:38] -rw-r--r--. 2 boincer umatlas    592396 Jan  7 17:25 input.tar.gz
[2026-01-08 05:42:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 17:25 start_atlas.sh
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas 217284888 Jan  8 05:37 HITS.pool.root.1
[2026-01-08 05:42:38] -rw-------. 1 boincer umatlas   6092800 Jan  8 05:42 result.tar.gz
05:42:40 (538442): run_atlas exited; CPU time 81885.507756
05:42:40 (538442): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN