Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:21:22 (1679062): wrapper (7.7.26015): starting
01:21:22 (1679062): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 01:21:22] Arguments: --nthreads 4
[2026-01-08 01:21:22] Threads: 4
[2026-01-08 01:21:22] Checking for CVMFS
[2026-01-08 01:21:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 01:21:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 01:21:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 01:21:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 01:21:22] 2.9.2.0 1623267 201 55696 154885 3 56 19044322 36864000 0 130560 0 142729 99.974 12410 28204 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 01:21:22] CVMFS is ok
[2026-01-08 01:21:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 01:21:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 01:21:22] Further information can be found at the LHC@home message board.
[2026-01-08 01:21:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 01:21:22] Checking for apptainer binary...
[2026-01-08 01:21:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 01:21:22] Running /usr/bin/apptainer --version
[2026-01-08 01:21:22] apptainer version 1.4.1-1.1
[2026-01-08 01:21:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 01:21:22] thA350a
[2026-01-08 01:21:22] apptainer works
[2026-01-08 01:21:22] Set ATHENA_PROC_NUMBER=4
[2026-01-08 01:21:22] Set ATHENA_CORE_NUMBER=4
[2026-01-08 01:21:22] Starting ATLAS job with PandaID=6962313399
[2026-01-08 01:21:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 02:58:43]  *** The last 200 lines of the pilot log: ***
[2026-01-08 02:58:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/29/log.47898826._010701.job.log.tgz.1
[2026-01-08 02:58:43]  workdir=None
[2026-01-08 02:58:43] ]
[2026-01-08 02:58:43] 2026-01-08 01:57:36,398 | INFO     | transferring file log.47898826._010701.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6962313399/log.47898826._010701.job.log.tgz.1 to /local/data/boinc/
[2026-01-08 02:58:43] 2026-01-08 01:57:36,398 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6962313399/log.47898826._010701.job.log.tgz.1 /local/data/boinc/slots/0/log.47898826._0107
[2026-01-08 02:58:43] 2026-01-08 01:57:36,415 | INFO     | adding to output.list: log.47898826._010701.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/29/log.47898826._010701.job.log.tg
[2026-01-08 02:58:43] 2026-01-08 01:57:36,416 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 02:58:43] 2026-01-08 01:57:36,416 | INFO     | summary of transferred files:
[2026-01-08 02:58:43] 2026-01-08 01:57:36,416 | INFO     |  -- lfn=log.47898826._010701.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 02:58:43] 2026-01-08 01:57:36,416 | INFO     | stage-out finished correctly
[2026-01-08 02:58:43] 2026-01-08 01:57:36,454 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 02:58:43] 2026-01-08 01:57:36,490 | INFO     | job 6962313399 has state=finished
[2026-01-08 02:58:43] 2026-01-08 01:57:36,491 | INFO     | preparing for final server update for job 6962313399 in state='finished'
[2026-01-08 02:58:43] 2026-01-08 01:57:36,491 | INFO     | this job has now completed (state=finished)
[2026-01-08 02:58:43] 2026-01-08 01:57:36,491 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 02:58:43] 2026-01-08 01:57:36,491 | INFO     | log transfer has been attempted: DONE
[2026-01-08 02:58:43] 2026-01-08 01:57:36,491 | INFO     | job 6962313399 has finished - writing final server update
[2026-01-08 02:58:43] 2026-01-08 01:57:36,491 | INFO     | total number of processed events: 400 (read)
[2026-01-08 02:58:43] 2026-01-08 01:57:36,492 | INFO     | executing command: lscpu
[2026-01-08 02:58:43] 2026-01-08 01:57:36,509 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 02:58:43] 2026-01-08 01:57:37,925 | INFO     | time since job start (5767s) is within the limit (174528.0s)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,097 | WARNING  | process 1689410 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 02:58:43] 2026-01-08 01:57:39,097 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6962313399/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,097 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6962313399/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,098 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-08 02:58:43] 2026-01-08 01:57:39,098 | WARNING  | maxPSS not found in memory monitor output
[2026-01-08 02:58:43] 2026-01-08 01:57:39,098 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2319395 B
[2026-01-08 02:58:43] 2026-01-08 01:57:39,098 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16088 B
[2026-01-08 02:58:43] 2026-01-08 01:57:39,098 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,644 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 02:58:43] 2026-01-08 01:57:39,650 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3431.1421875000005
[2026-01-08 02:58:43] 2026-01-08 01:57:39,651 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6962313399/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,653 | INFO     | extracted standard info from prmon json
[2026-01-08 02:58:43] 2026-01-08 01:57:39,653 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 02:58:43] 2026-01-08 01:57:39,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 02:58:43] 2026-01-08 01:57:39,653 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 02:58:43] 2026-01-08 01:57:39,653 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 02:58:43] 2026-01-08 01:57:39,654 | INFO     | fitting pss+swap vs Time
[2026-01-08 02:58:43] 2026-01-08 01:57:39,654 | INFO     | sum of square deviations: 211285822.0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | sum of deviations: -20905460914.000004
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | mean x: 1767834670.5
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | mean y: 2572348.409090909
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | intersect: 174919177053.44144
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | chi2: 0.056276184449646674
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | current memory leak: -98.94 B/s (using 88 data points, chi2=0.06)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | could have reported an average CPU frequency of 3633 MHz (7 samples)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | ..............................
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . Timing measurements:
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . get job = 0 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . initial setup = 1 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . payload setup = 4 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . stage-in = 0 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . payload execution = 5744 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . stage-out = 0 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | . log creation = 0 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,655 | INFO     | ..............................
[2026-01-08 02:58:43] 2026-01-08 01:57:39,674 | INFO     | sufficient remaining disk space (241761779712 B)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,679 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | 
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | job summary report
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | --------------------------------------------------
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | PanDA job id: 6962313399
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | task id: 47898826
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | errors: (none)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | pilot state: finished 
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | transexitcode: 0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,696 | INFO     | exeerrorcode: 0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | exeerrordiag: 
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | exitcode: 0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | exitmsg: OK
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | cpuconsumptiontime: 22049 s
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | nevents: 400
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | neventsw: 0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | pid: 1689410
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | pgrp: 1689410
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | corecount: 4
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | event service: False
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | sizes: {0: 2283967, 3: 2284229, 11: 2284257, 5751: 2311059, 5752: 2320118, 5755: 2320256}
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | --------------------------------------------------
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | 
[2026-01-08 02:58:43] 2026-01-08 01:57:39,697 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-08 02:58:43] 2026-01-08 01:57:39,700 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6962313399: 2623654 B (within 2768240640 B limit)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,701 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6962313399/HITS.47898826._010701.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,701 | INFO     | total size of present files: 0 B (workdir size: 2623654 B)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,701 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6962313399/HITS.47898826._010701.pool.root.1 since it does not exist
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | job 6962313399 has completed (purged errors)
[2026-01-08 02:58:43] 2026-01-08 01:57:39,715 | INFO     | overall cleanup function is called
[2026-01-08 02:58:43] 2026-01-08 01:57:39,746 | INFO     | number of running child processes to parent process 1689410: 1
[2026-01-08 02:58:43] 2026-01-08 01:57:39,746 | INFO     | maximum number of monitored processes: 6
[2026-01-08 02:58:43] 2026-01-08 01:57:39,746 | INFO     | aborting job monitoring since job object (job id=6962313399) has expired
[2026-01-08 02:58:43] 2026-01-08 01:57:40,722 | INFO     | --- collectZombieJob: --- 10, [1689410]
[2026-01-08 02:58:43] 2026-01-08 01:57:40,722 | INFO     | zombie collector waiting for pid 1689410
[2026-01-08 02:58:43] 2026-01-08 01:57:40,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 02:58:43] 2026-01-08 01:57:40,723 | INFO     | collected zombie processes
[2026-01-08 02:58:43] 2026-01-08 01:57:40,723 | INFO     | will attempt to kill all subprocesses of pid=1689410
[2026-01-08 02:58:43] 2026-01-08 01:57:40,763 | INFO     | process IDs to be killed: [1689410] (in reverse order)
[2026-01-08 02:58:43] 2026-01-08 01:57:40,793 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 02:58:43] 2026-01-08 01:57:40,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 02:58:43] 2026-01-08 01:57:40,795 | INFO     | did not find any defunct processes belonging to 1689410
[2026-01-08 02:58:43] 2026-01-08 01:57:40,796 | INFO     | did not find any defunct processes belonging to 1689410
[2026-01-08 02:58:43] 2026-01-08 01:57:40,796 | INFO     | ready for new job
[2026-01-08 02:58:43] 2026-01-08 01:57:40,796 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 02:58:43] 2026-01-08 01:57:40,797 | INFO     | ***************************************
[2026-01-08 02:58:43] 2026-01-08 01:57:40,797 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 02:58:43] 2026-01-08 01:57:40,797 | INFO     | ***************************************
[2026-01-08 02:58:43] 2026-01-08 01:57:40,797 | INFO     | 
[2026-01-08 02:58:43] 2026-01-08 01:57:40,797 | INFO     | architecture information:
[2026-01-08 02:58:43] 2026-01-08 01:57:40,798 | INFO     | executing command: cat /etc/os-release
[2026-01-08 02:58:43] 2026-01-08 01:57:40,811 | INFO     | cat /etc/os-release:
[2026-01-08 02:58:43] NAME="CentOS Linux"
[2026-01-08 02:58:43] VERSION="7 (Core)"
[2026-01-08 02:58:43] ID="centos"
[2026-01-08 02:58:43] ID_LIKE="rhel fedora"
[2026-01-08 02:58:43] VERSION_ID="7"
[2026-01-08 02:58:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 02:58:43] ANSI_COLOR="0;31"
[2026-01-08 02:58:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 02:58:43] HOME_URL="https://www.centos.org/"
[2026-01-08 02:58:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 02:58:43] 
[2026-01-08 02:58:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 02:58:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 02:58:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 02:58:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 02:58:43] 
[2026-01-08 02:58:43] 2026-01-08 01:57:40,811 | INFO     | ***************************************
[2026-01-08 02:58:43] 2026-01-08 01:57:41,314 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 02:58:43] 2026-01-08 01:57:41,331 | INFO     | sufficient remaining disk space (241764925440 B)
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | INFO     | update_server=False
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 02:58:43] 2026-01-08 01:57:41,332 | INFO     | aborting loop
[2026-01-08 02:58:43] 2026-01-08 01:57:41,557 | INFO     | all job control threads have been joined
[2026-01-08 02:58:43] 2026-01-08 01:57:41,952 | INFO     | all payload control threads have been joined
[2026-01-08 02:58:43] 2026-01-08 01:57:41,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 02:58:43] 2026-01-08 01:57:42,209 | INFO     | all data control threads have been joined
[2026-01-08 02:58:43] 2026-01-08 01:57:42,337 | INFO     | [job] queue monitor thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:42,338 | INFO     | [job] retrieve thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:42,338 | INFO     | [job] job monitor thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:42,496 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 02:58:43] 2026-01-08 01:57:42,563 | INFO     | [job] control thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:42,958 | INFO     | [payload] control thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,030 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,047 | INFO     | [job] validate thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,128 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,215 | INFO     | [data] control thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,236 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,470 | INFO     | [payload] validate_post thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,480 | INFO     | [data] copytool_in thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,742 | INFO     | [payload] failed_post thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:43,967 | INFO     | [data] copytool_out thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:46,499 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:57:52,131 | INFO     | job.realtimelogging is not enabled
[2026-01-08 02:58:43] 2026-01-08 01:57:53,136 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 02:58:43] 2026-01-08 01:58:11,041 | INFO     | PID=1682838 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 02:58:43] 2026-01-08 01:58:11,042 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 02:58:43] 2026-01-08 01:58:11,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 02:58:43] 2026-01-08 01:58:11,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 02:58:43] 2026-01-08 01:58:36,710 | INFO     | [monitor] cgroup control has ended
[2026-01-08 02:58:43] 2026-01-08 01:58:38,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622567085888)>', '<ExcThread(monitor, started 139621803489024)>']
[2026-01-08 02:58:43] 2026-01-08 01:58:39,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 02:58:43] 2026-01-08 01:58:39,191 | INFO     | [monitor] control thread has ended
[2026-01-08 02:58:43] 2026-01-08 01:58:43,377 | INFO     | all workflow threads have been joined
[2026-01-08 02:58:43] 2026-01-08 01:58:43,377 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 02:58:43] 2026-01-08 01:58:43,378 | INFO     | traces error code: 0
[2026-01-08 02:58:43] 2026-01-08 01:58:43,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 02:58:43] 2026-01-08 01:58:43,457 [wrapper] ==== pilot stdout END ====
[2026-01-08 02:58:43] 2026-01-08 01:58:43,461 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 02:58:43] 2026-01-08 01:58:43,465 [wrapper] pilotpid: 1682838
[2026-01-08 02:58:43] 2026-01-08 01:58:43,469 [wrapper] Pilot exit status: 0
[2026-01-08 02:58:43] 2026-01-08 01:58:43,480 [wrapper] pandaids: 6962313399
[2026-01-08 02:58:43] 2026-01-08 01:58:43,501 [wrapper] cleanup supervisor_pilot 1701552 1682839
[2026-01-08 02:58:43] 2026-01-08 01:58:43,505 [wrapper] Test setup, not cleaning
[2026-01-08 02:58:43] 2026-01-08 01:58:43,509 [wrapper] apfmon messages muted
[2026-01-08 02:58:43] 2026-01-08 01:58:43,513 [wrapper] ==== wrapper stdout END ====
[2026-01-08 02:58:43] 2026-01-08 01:58:43,516 [wrapper] ==== wrapper stderr END ====
[2026-01-08 02:58:43]  *** Error codes and diagnostics ***
[2026-01-08 02:58:43]     "exeErrorCode": 0,
[2026-01-08 02:58:43]     "exeErrorDiag": "",
[2026-01-08 02:58:43]     "pilotErrorCode": 0,
[2026-01-08 02:58:43]     "pilotErrorDiag": "",
[2026-01-08 02:58:43]  *** Listing of results directory ***
[2026-01-08 02:58:43] total 439712
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc    579449 Jan  7 21:49 pilot3.tar.gz
[2026-01-08 02:58:43] -rwx------ 1 boinc boinc     36322 Jan  7 21:53 runpilot2-wrapper.sh
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc      5112 Jan  7 21:53 queuedata.json
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc       100 Jan  8 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 02:58:43] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 01:21 run_atlas
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc       105 Jan  8 01:21 job.xml
[2026-01-08 02:58:43] -rw-r--r-- 2 boinc boinc 226127974 Jan  8 01:21 EVNT.47898824._000571.pool.root.1
[2026-01-08 02:58:43] -rw-r--r-- 2 boinc boinc    592390 Jan  8 01:21 input.tar.gz
[2026-01-08 02:58:43] -rw-r--r-- 2 boinc boinc     15847 Jan  8 01:21 start_atlas.sh
[2026-01-08 02:58:43] drwxrwx--x 2 boinc boinc      4096 Jan  8 01:21 shared
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc         0 Jan  8 01:21 boinc_setup_complete
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc      6377 Jan  8 01:21 init_data.xml
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc         0 Jan  8 01:21 boinc_lockfile
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc      2516 Jan  8 01:21 pandaJob.out
[2026-01-08 02:58:43] -rw------- 1 boinc boinc    989777 Jan  8 01:21 agis_schedconf.cvmfs.json
[2026-01-08 02:58:43] -rw------- 1 boinc boinc   1516240 Jan  8 01:21 agis_ddmendpoints.agis.ALL.json
[2026-01-08 02:58:43] drwx------ 5 boinc boinc      4096 Jan  8 01:21 pilot3
[2026-01-08 02:58:43] -rw------- 1 boinc boinc 217979302 Jan  8 02:57 HITS.47898826._010701.pool.root.1
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc       530 Jan  8 02:57 boinc_task_state.xml
[2026-01-08 02:58:43] -rw------- 1 boinc boinc      1023 Jan  8 02:57 memory_monitor_summary.json
[2026-01-08 02:58:43] -rw------- 1 boinc boinc    279212 Jan  8 02:57 log.47898826._010701.job.log.tgz.1
[2026-01-08 02:58:43] -rw------- 1 boinc boinc      7777 Jan  8 02:57 heartbeat.json
[2026-01-08 02:58:43] -rw------- 1 boinc boinc        95 Jan  8 02:58 pilot_heartbeat.json
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc      8192 Jan  8 02:58 boinc_mmap_file
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc        27 Jan  8 02:58 wrapper_checkpoint.txt
[2026-01-08 02:58:43] -rw------- 1 boinc boinc      4824 Jan  8 02:58 pilotlog.txt
[2026-01-08 02:58:43] -rw------- 1 boinc boinc    840170 Jan  8 02:58 log.47898826._010701.job.log.1
[2026-01-08 02:58:43] -rw------- 1 boinc boinc       357 Jan  8 02:58 output.list
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc       620 Jan  8 02:58 runtime_log
[2026-01-08 02:58:43] -rw------- 1 boinc boinc   1136640 Jan  8 02:58 result.tar.gz
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc      8902 Jan  8 02:58 runtime_log.err
[2026-01-08 02:58:43] -rw------- 1 boinc boinc       660 Jan  8 02:58 jfxKDm5hpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmViKDmFjuTGn.diag
[2026-01-08 02:58:43] -rw-r--r-- 1 boinc boinc     22627 Jan  8 02:58 stderr.txt
[2026-01-08 02:58:43] HITS file was successfully produced:
[2026-01-08 02:58:43] -rw------- 1 boinc boinc 217979302 Jan  8 02:57 shared/HITS.pool.root.1
[2026-01-08 02:58:43]  *** Contents of shared directory: ***
[2026-01-08 02:58:43] total 435420
[2026-01-08 02:58:43] -rw-r--r-- 2 boinc boinc 226127974 Jan  8 01:21 ATLAS.root_0
[2026-01-08 02:58:43] -rw-r--r-- 2 boinc boinc    592390 Jan  8 01:21 input.tar.gz
[2026-01-08 02:58:43] -rw-r--r-- 2 boinc boinc     15847 Jan  8 01:21 start_atlas.sh
[2026-01-08 02:58:43] -rw------- 1 boinc boinc 217979302 Jan  8 02:57 HITS.pool.root.1
[2026-01-08 02:58:43] -rw------- 1 boinc boinc   1136640 Jan  8 02:58 result.tar.gz
02:58:44 (1679062): run_atlas exited; CPU time 22066.353411
02:58:44 (1679062): called boinc_finish(0)

</stderr_txt>
]]>

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