Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:43:08 (27391): wrapper (7.7.26015): starting
23:43:08 (27391): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 23:43:08] Arguments: --nthreads 8
[2026-01-07 23:43:08] Threads: 8
[2026-01-07 23:43:08] Checking for CVMFS
[2026-01-07 23:43:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 23:43:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 23:43:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 23:43:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 23:43:11] 2.11.2.0 22482 33133 94000 154882 1 101 18599948 25165824 939 130560 0 14633663 99.833 8463256 3631 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-07 23:43:11] CVMFS is ok
[2026-01-07 23:43:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 23:43:11] Checking for apptainer binary...
[2026-01-07 23:43:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 23:43:11] Running /usr/bin/apptainer --version
[2026-01-07 23:43:11] apptainer version 1.3.2-1.el7
[2026-01-07 23:43:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 23:43:47] cg-vwn445.simple-grid.lan
[2026-01-07 23:43:47] apptainer works
[2026-01-07 23:43:47] Set ATHENA_PROC_NUMBER=8
[2026-01-07 23:43:47] Set ATHENA_CORE_NUMBER=8
[2026-01-07 23:43:47] Starting ATLAS job with PandaID=6962018628
[2026-01-07 23:43:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 04:53:42]  *** The last 200 lines of the pilot log: ***
[2026-01-08 04:53:42] 2026-01-08 03:52:42,697 | INFO     | time since job start (18281s) is within the limit (174528.0s)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,064 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 04:53:42] 2026-01-08 03:52:43,065 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 04:53:42] 2026-01-08 03:52:43,067 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6962018628/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,068 | INFO     | extracted standard info from prmon json
[2026-01-08 04:53:42] 2026-01-08 03:52:43,068 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 04:53:42] 2026-01-08 03:52:43,068 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 04:53:42] 2026-01-08 03:52:43,069 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 04:53:42] 2026-01-08 03:52:43,069 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 04:53:42] 2026-01-08 03:52:43,075 | INFO     | fitting pss+swap vs Time
[2026-01-08 04:53:42] 2026-01-08 03:52:43,076 | INFO     | sum of square deviations: 7484568240.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,084 | INFO     | sum of deviations: 131310090534.99992
[2026-01-08 04:53:42] 2026-01-08 03:52:43,084 | INFO     | mean x: 1767835419.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,084 | INFO     | mean y: 2438931.7335640136
[2026-01-08 04:53:42] 2026-01-08 03:52:43,085 | INFO     | intersect: -31012660600.56351
[2026-01-08 04:53:42] 2026-01-08 03:52:43,085 | INFO     | chi2: 5.665981646295798
[2026-01-08 04:53:42] 2026-01-08 03:52:43,086 | INFO     | sum of square deviations: 7102775035.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,089 | INFO     | sum of deviations: 147615114875.99997
[2026-01-08 04:53:42] 2026-01-08 03:52:43,089 | INFO     | mean x: 1767835266.5
[2026-01-08 04:53:42] 2026-01-08 03:52:43,089 | INFO     | mean y: 2445337.26056338
[2026-01-08 04:53:42] 2026-01-08 03:52:43,089 | INFO     | intersect: -36738012393.74253
[2026-01-08 04:53:42] 2026-01-08 03:52:43,090 | INFO     | chi2: 4.928984959622649
[2026-01-08 04:53:42] 2026-01-08 03:52:43,090 | INFO     | current chi2=4.928984959622649 (change=13.00739629389674 %)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,090 | INFO     | right removable region: 283
[2026-01-08 04:53:42] 2026-01-08 03:52:43,090 | INFO     | sum of square deviations: 7102775035.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,093 | INFO     | sum of deviations: 36820706113.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,094 | INFO     | mean x: 1767835571.5
[2026-01-08 04:53:42] 2026-01-08 03:52:43,094 | INFO     | mean y: 2476634.4647887326
[2026-01-08 04:53:42] 2026-01-08 03:52:43,094 | INFO     | intersect: -9161963139.22275
[2026-01-08 04:53:42] 2026-01-08 03:52:43,094 | INFO     | chi2: 1.5311718721006073
[2026-01-08 04:53:42] 2026-01-08 03:52:43,095 | INFO     | current chi2=1.5311718721006073 (change=72.97605308867125 %)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,095 | INFO     | sum of square deviations: 6734191380.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,098 | INFO     | sum of deviations: -91298395.00000381
[2026-01-08 04:53:42] 2026-01-08 03:52:43,098 | INFO     | mean x: 1767835724.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,099 | INFO     | mean y: 2491836.2437275983
[2026-01-08 04:53:42] 2026-01-08 03:52:43,099 | INFO     | intersect: 26459162.848702956
[2026-01-08 04:53:42] 2026-01-08 03:52:43,099 | INFO     | chi2: 0.799504032705442
[2026-01-08 04:53:42] 2026-01-08 03:52:43,099 | INFO     | current chi2=0.799504032705442 (change=47.784827603409 %)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,100 | INFO     | sum of square deviations: 6378584712.5
[2026-01-08 04:53:42] 2026-01-08 03:52:43,109 | INFO     | sum of deviations: -3065112780.500004
[2026-01-08 04:53:42] 2026-01-08 03:52:43,109 | INFO     | mean x: 1767835876.5
[2026-01-08 04:53:42] 2026-01-08 03:52:43,110 | INFO     | mean y: 2493094.9525547447
[2026-01-08 04:53:42] 2026-01-08 03:52:43,110 | INFO     | intersect: 851994447.2302488
[2026-01-08 04:53:42] 2026-01-08 03:52:43,110 | INFO     | chi2: 0.7856146102695358
[2026-01-08 04:53:42] 2026-01-08 03:52:43,110 | INFO     | current chi2=0.7856146102695358 (change=1.7372548314616703 %)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,111 | INFO     | left removable region: 30
[2026-01-08 04:53:42] 2026-01-08 03:52:43,111 | INFO     | sum of square deviations: 5021496942.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,114 | INFO     | sum of deviations: 11324401180.999998
[2026-01-08 04:53:42] 2026-01-08 03:52:43,114 | INFO     | mean x: 1767836151.0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,114 | INFO     | mean y: 2502394.6640316206
[2026-01-08 04:53:42] 2026-01-08 03:52:43,114 | INFO     | intersect: -3984293978.4958215
[2026-01-08 04:53:42] 2026-01-08 03:52:43,115 | INFO     | chi2: 0.0010953918066835403
[2026-01-08 04:53:42] 2026-01-08 03:52:43,115 | INFO     | current memory leak: 2.26 B/s (using 253 data points, chi2=0.00)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,116 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,116 | INFO     | ..............................
[2026-01-08 04:53:42] 2026-01-08 03:52:43,116 | INFO     | . Timing measurements:
[2026-01-08 04:53:42] 2026-01-08 03:52:43,116 | INFO     | . get job = 0 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,116 | INFO     | . initial setup = 9 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,117 | INFO     | . payload setup = 148 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,117 | INFO     | . stage-in = 0 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,117 | INFO     | . payload execution = 17783 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,117 | INFO     | . stage-out = 3 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,117 | INFO     | . log creation = 1 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,117 | INFO     | ..............................
[2026-01-08 04:53:42] 2026-01-08 03:52:43,363 | INFO     | 
[2026-01-08 04:53:42] 2026-01-08 03:52:43,363 | INFO     | job summary report
[2026-01-08 04:53:42] 2026-01-08 03:52:43,363 | INFO     | --------------------------------------------------
[2026-01-08 04:53:42] 2026-01-08 03:52:43,363 | INFO     | PanDA job id: 6962018628
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | task id: 47898826
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | errors: (none)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | pilot state: finished 
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | transexitcode: 0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | exeerrorcode: 0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | exeerrordiag: 
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | exitcode: 0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,364 | INFO     | exitmsg: OK
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | cpuconsumptiontime: 83446 s
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | nevents: 400
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | neventsw: 0
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | pid: 5254
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | pgrp: 5254
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | corecount: 8
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | event service: False
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | sizes: {0: 2283136, 1: 2283822, 2: 2284021, 13: 2284021, 23: 2284077, 34: 2284105, 45: 2284261, 56: 2284289, 66: 2284317, 77: 2284345, 88: 2284401, 99: 2284709, 10
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | --------------------------------------------------
[2026-01-08 04:53:42] 2026-01-08 03:52:43,365 | INFO     | 
[2026-01-08 04:53:42] 2026-01-08 03:52:43,366 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-08 04:53:42] 2026-01-08 03:52:43,970 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,970 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,972 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,973 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,973 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 04:53:42] 2026-01-08 03:52:43,973 | INFO     | job 6962018628 has completed (purged errors)
[2026-01-08 04:53:42] 2026-01-08 03:52:43,973 | INFO     | overall cleanup function is called
[2026-01-08 04:53:42] 2026-01-08 03:52:44,982 | INFO     | --- collectZombieJob: --- 10, [5254]
[2026-01-08 04:53:42] 2026-01-08 03:52:44,982 | INFO     | zombie collector waiting for pid 5254
[2026-01-08 04:53:42] 2026-01-08 03:52:44,982 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 04:53:42] 2026-01-08 03:52:44,983 | INFO     | collected zombie processes
[2026-01-08 04:53:42] 2026-01-08 03:52:44,983 | INFO     | will attempt to kill all subprocesses of pid=5254
[2026-01-08 04:53:42] 2026-01-08 03:52:45,065 | INFO     | process IDs to be killed: [5254] (in reverse order)
[2026-01-08 04:53:42] 2026-01-08 03:52:46,021 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 04:53:42] 2026-01-08 03:52:46,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 04:53:42] 2026-01-08 03:52:46,023 | INFO     | did not find any defunct processes belonging to 5254
[2026-01-08 04:53:42] 2026-01-08 03:52:46,025 | INFO     | did not find any defunct processes belonging to 5254
[2026-01-08 04:53:42] 2026-01-08 03:52:46,025 | INFO     | ready for new job
[2026-01-08 04:53:42] 2026-01-08 03:52:46,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 04:53:42] 2026-01-08 03:52:46,028 | INFO     | ***************************************
[2026-01-08 04:53:42] 2026-01-08 03:52:46,028 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 04:53:42] 2026-01-08 03:52:46,028 | INFO     | ***************************************
[2026-01-08 04:53:42] 2026-01-08 03:52:46,028 | INFO     | 
[2026-01-08 04:53:42] 2026-01-08 03:52:46,029 | INFO     | pilot is running in a VM
[2026-01-08 04:53:42] 2026-01-08 03:52:46,029 | INFO     | architecture information:
[2026-01-08 04:53:42] 2026-01-08 03:52:46,044 | INFO     | executing command: cat /etc/os-release
[2026-01-08 04:53:42] 2026-01-08 03:52:46,346 | INFO     | cat /etc/os-release:
[2026-01-08 04:53:42] NAME="CentOS Linux"
[2026-01-08 04:53:42] VERSION="7 (Core)"
[2026-01-08 04:53:42] ID="centos"
[2026-01-08 04:53:42] ID_LIKE="rhel fedora"
[2026-01-08 04:53:42] VERSION_ID="7"
[2026-01-08 04:53:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 04:53:42] ANSI_COLOR="0;31"
[2026-01-08 04:53:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 04:53:42] HOME_URL="https://www.centos.org/"
[2026-01-08 04:53:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 04:53:42] 
[2026-01-08 04:53:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 04:53:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 04:53:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 04:53:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 04:53:42] 
[2026-01-08 04:53:42] 2026-01-08 03:52:46,347 | INFO     | ***************************************
[2026-01-08 04:53:42] 2026-01-08 03:52:46,850 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-08 04:53:42] 2026-01-08 03:52:47,122 | INFO     | sufficient remaining disk space (497616420864 B)
[2026-01-08 04:53:42] 2026-01-08 03:52:47,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 04:53:42] 2026-01-08 03:52:47,122 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 04:53:42] 2026-01-08 03:52:47,123 | INFO     | update_server=False
[2026-01-08 04:53:42] 2026-01-08 03:52:47,123 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 04:53:42] 2026-01-08 03:52:47,185 | INFO     | all payload control threads have been joined
[2026-01-08 04:53:42] 2026-01-08 03:52:47,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 04:53:42] 2026-01-08 03:52:47,648 | INFO     | all job control threads have been joined
[2026-01-08 04:53:42] 2026-01-08 03:52:47,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 04:53:42] 2026-01-08 03:52:47,768 | INFO     | aborting loop
[2026-01-08 04:53:42] 2026-01-08 03:52:48,004 | INFO     | all data control threads have been joined
[2026-01-08 04:53:42] 2026-01-08 03:52:48,129 | INFO     | [job] retrieve thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,191 | INFO     | [payload] control thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,193 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 04:53:42] 2026-01-08 03:52:48,196 | INFO     | [job] validate thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,234 | INFO     | [payload] validate_post thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,309 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 04:53:42] 2026-01-08 03:52:48,519 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,654 | INFO     | [job] control thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,690 | INFO     | [payload] failed_post thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:48,774 | INFO     | [job] job monitor thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:49,010 | INFO     | [data] control thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:49,128 | INFO     | [data] copytool_in thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:49,324 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:49,389 | INFO     | [job] queue monitor thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:49,572 | INFO     | [data] copytool_out thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:52:52,203 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 04:53:42] 2026-01-08 03:53:15,871 | INFO     | PID=31134 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 04:53:42] 2026-01-08 03:53:15,872 | INFO     | .. there are 2 such processes running
[2026-01-08 04:53:42] 2026-01-08 03:53:15,872 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 04:53:42] 2026-01-08 03:53:15,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 04:53:42] 2026-01-08 03:53:15,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 04:53:42] 2026-01-08 03:53:32,242 | INFO     | [monitor] cgroup control has ended
[2026-01-08 04:53:42] 2026-01-08 03:53:32,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651843262272)>', '<ExcThread(monitor, started 139651096491776)>']
[2026-01-08 04:53:42] 2026-01-08 03:53:33,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 04:53:42] 2026-01-08 03:53:33,979 | INFO     | [monitor] control thread has ended
[2026-01-08 04:53:42] 2026-01-08 03:53:38,005 | INFO     | all workflow threads have been joined
[2026-01-08 04:53:42] 2026-01-08 03:53:38,005 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 04:53:42] 2026-01-08 03:53:38,006 | INFO     | traces error code: 0
[2026-01-08 04:53:42] 2026-01-08 03:53:38,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 04:53:42] 2026-01-08 03:53:38,259 [wrapper] ==== pilot stdout END ====
[2026-01-08 04:53:42] 2026-01-08 03:53:38,349 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 04:53:42] 2026-01-08 03:53:38,437 [wrapper] pilotpid: 31134
[2026-01-08 04:53:42] 2026-01-08 03:53:38,529 [wrapper] Pilot exit status: 0
[2026-01-08 04:53:42] 2026-01-08 03:53:38,910 [wrapper] pandaids: 6962018628
[2026-01-08 04:53:42] 2026-01-08 03:53:39,898 [wrapper] cleanup supervisor_pilot  3872 31135
[2026-01-08 04:53:42] 2026-01-08 03:53:40,018 [wrapper] Test setup, not cleaning
[2026-01-08 04:53:42] 2026-01-08 03:53:40,089 [wrapper] apfmon messages muted
[2026-01-08 04:53:42] 2026-01-08 03:53:40,165 [wrapper] ==== wrapper stdout END ====
[2026-01-08 04:53:42] 2026-01-08 03:53:40,224 [wrapper] ==== wrapper stderr END ====
[2026-01-08 04:53:42]  *** Error codes and diagnostics ***
[2026-01-08 04:53:43]     "exeErrorCode": 0,
[2026-01-08 04:53:43]     "exeErrorDiag": "",
[2026-01-08 04:53:43]     "pilotErrorCode": 0,
[2026-01-08 04:53:43]     "pilotErrorDiag": "",
[2026-01-08 04:53:43]  *** Listing of results directory ***
[2026-01-08 04:53:43] total 445108
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 04:53:43] -rwx------. 1 boinc boinc     36322 Jan  7 16:35 runpilot2-wrapper.sh
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc      5112 Jan  7 16:38 queuedata.json
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc       100 Jan  7 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 04:53:43] -rwxr-xr-x. 1 boinc boinc      7986 Jan  7 23:43 run_atlas
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc       105 Jan  7 23:43 job.xml
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc      6391 Jan  7 23:43 init_data.xml
[2026-01-08 04:53:43] -rw-r--r--. 2 boinc boinc 224840707 Jan  7 23:43 EVNT.47898824._000533.pool.root.1
[2026-01-08 04:53:43] -rw-r--r--. 2 boinc boinc     15847 Jan  7 23:43 start_atlas.sh
[2026-01-08 04:53:43] drwxrwx--x. 2 boinc boinc        68 Jan  7 23:43 shared
[2026-01-08 04:53:43] -rw-r--r--. 2 boinc boinc    592397 Jan  7 23:43 input.tar.gz
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc         0 Jan  7 23:43 boinc_lockfile
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc      2516 Jan  7 23:43 pandaJob.out
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc    989785 Jan  7 23:47 agis_schedconf.cvmfs.json
[2026-01-08 04:53:43] drwx------. 5 boinc boinc      4096 Jan  7 23:48 pilot3
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc 221126777 Jan  8 04:49 HITS.47898826._010444.pool.root.1
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc       531 Jan  8 04:49 boinc_task_state.xml
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc      1020 Jan  8 04:50 memory_monitor_summary.json
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc   1516240 Jan  8 04:50 agis_ddmendpoints.agis.ALL.json
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc    510487 Jan  8 04:50 log.47898826._010444.job.log.tgz.1
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc      7777 Jan  8 04:52 heartbeat.json
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc        95 Jan  8 04:52 pilot_heartbeat.json
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc        28 Jan  8 04:53 wrapper_checkpoint.txt
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc      8192 Jan  8 04:53 boinc_mmap_file
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc      4885 Jan  8 04:53 pilotlog.txt
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc   2452462 Jan  8 04:53 log.47898826._010444.job.log.1
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc       357 Jan  8 04:53 output.list
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc       620 Jan  8 04:53 runtime_log
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc   2979840 Jan  8 04:53 result.tar.gz
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc       657 Jan  8 04:53 Y8sKDmUkkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbQiKDmlWDNim.diag
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc      8833 Jan  8 04:53 runtime_log.err
[2026-01-08 04:53:43] -rw-r--r--. 1 boinc boinc     20771 Jan  8 04:53 stderr.txt
[2026-01-08 04:53:43] HITS file was successfully produced:
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc 221126777 Jan  8 04:49 shared/HITS.pool.root.1
[2026-01-08 04:53:43]  *** Contents of shared directory: ***
[2026-01-08 04:53:43] total 439028
[2026-01-08 04:53:43] -rw-r--r--. 2 boinc boinc 224840707 Jan  7 23:43 ATLAS.root_0
[2026-01-08 04:53:43] -rw-r--r--. 2 boinc boinc     15847 Jan  7 23:43 start_atlas.sh
[2026-01-08 04:53:43] -rw-r--r--. 2 boinc boinc    592397 Jan  7 23:43 input.tar.gz
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc 221126777 Jan  8 04:49 HITS.pool.root.1
[2026-01-08 04:53:43] -rw-------. 1 boinc boinc   2979840 Jan  8 04:53 result.tar.gz
04:53:45 (27391): run_atlas exited; CPU time 83634.120139
04:53:45 (27391): called boinc_finish(0)

</stderr_txt>
]]>

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