Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:27:48 (2309103): wrapper (7.7.26015): starting
12:27:48 (2309103): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 12:27:48] Arguments: --nthreads 8
[2026-01-07 12:27:48] Threads: 8
[2026-01-07 12:27:48] Checking for CVMFS
[2026-01-07 12:27:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 12:27:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 12:27:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 12:27:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 12:27:49] 2.13.3.0 8993 11613 105056 154875 2 358 25823468 40960000 25731 16776704 0 37865330 99.742 22739946 44993 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-07 12:27:49] CVMFS is ok
[2026-01-07 12:27:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 12:27:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 12:27:49] Further information can be found at the LHC@home message board.
[2026-01-07 12:27:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 12:27:49] Checking for apptainer binary...
[2026-01-07 12:27:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 12:27:49] Running /usr/bin/apptainer --version
[2026-01-07 12:27:49] apptainer version 1.4.5-2.el9
[2026-01-07 12:27:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 12:27:50] c-208-40.aglt2.org
[2026-01-07 12:27:50] apptainer works
[2026-01-07 12:27:50] Set ATHENA_PROC_NUMBER=8
[2026-01-07 12:27:50] Set ATHENA_CORE_NUMBER=8
[2026-01-07 12:27:50] Starting ATLAS job with PandaID=6962013648
[2026-01-07 12:27:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 13:50:41]  *** The last 200 lines of the pilot log: ***
[2026-01-07 13:50:41]  replicas=None
[2026-01-07 13:50:41]  scope=mc23_13p6TeV
[2026-01-07 13:50:41]  status=None
[2026-01-07 13:50:41]  status_code=0
[2026-01-07 13:50:41]  storage_token=
[2026-01-07 13:50:41]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6962013648/log.47898826._008448.job.log.tgz.1
[2026-01-07 13:50:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/c6/log.47898826._008448.job.log.tgz.1
[2026-01-07 13:50:41]  workdir=None
[2026-01-07 13:50:41] ]
[2026-01-07 13:50:41] 2026-01-07 18:50:01,913 | INFO     | transferring file log.47898826._008448.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6962013648/log.47898826._008448.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-07 13:50:41] 2026-01-07 18:50:01,914 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6962013648/log.47898826._008448.job.log.tgz.1 /tmp/boinchome/slots/1/log.47898826._008448.job
[2026-01-07 13:50:41] 2026-01-07 18:50:01,930 | INFO     | adding to output.list: log.47898826._008448.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/c6/log.47898826._008448.job.log.tg
[2026-01-07 13:50:41] 2026-01-07 18:50:01,931 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-07 13:50:41] 2026-01-07 18:50:01,931 | INFO     | summary of transferred files:
[2026-01-07 13:50:41] 2026-01-07 18:50:01,931 | INFO     |  -- lfn=log.47898826._008448.job.log.tgz.1, status_code=0, status=transferred
[2026-01-07 13:50:41] 2026-01-07 18:50:01,931 | INFO     | stage-out finished correctly
[2026-01-07 13:50:41] 2026-01-07 18:50:03,597 | INFO     | time since job start (4896s) is within the limit (174528.0s)
[2026-01-07 13:50:41] 2026-01-07 18:50:04,675 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-07 13:50:41] 2026-01-07 18:50:04,726 | WARNING  | process 2331619 can no longer be monitored (due to stat problems) - aborting
[2026-01-07 13:50:41] 2026-01-07 18:50:04,727 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962013648/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 13:50:41] 2026-01-07 18:50:05,062 | INFO     | number of running child processes to parent process 2331619: 1
[2026-01-07 13:50:41] 2026-01-07 18:50:05,062 | INFO     | maximum number of monitored processes: 6
[2026-01-07 13:50:41] 2026-01-07 18:50:05,513 | INFO     | job 6962013648 has state=finished
[2026-01-07 13:50:41] 2026-01-07 18:50:05,513 | INFO     | preparing for final server update for job 6962013648 in state='finished'
[2026-01-07 13:50:41] 2026-01-07 18:50:05,514 | INFO     | this job has now completed (state=finished)
[2026-01-07 13:50:41] 2026-01-07 18:50:05,514 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-07 13:50:41] 2026-01-07 18:50:05,514 | INFO     | log transfer has been attempted: DONE
[2026-01-07 13:50:41] 2026-01-07 18:50:05,514 | INFO     | job 6962013648 has finished - writing final server update
[2026-01-07 13:50:41] 2026-01-07 18:50:05,514 | INFO     | total number of processed events: 400 (read)
[2026-01-07 13:50:41] 2026-01-07 18:50:05,515 | INFO     | executing command: lscpu
[2026-01-07 13:50:41] 2026-01-07 18:50:05,581 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-07 13:50:41] 2026-01-07 18:50:05,603 | INFO     | time since job start (4898s) is within the limit (174528.0s)
[2026-01-07 13:50:41] 2026-01-07 18:50:07,565 | INFO     | monitor loop #342: job 0:6962013648 is in state 'finished'
[2026-01-07 13:50:41] 2026-01-07 18:50:07,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-07 13:50:41] 2026-01-07 18:50:07,608 | INFO     | time since job start (4900s) is within the limit (174528.0s)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,026 | INFO     | PID=2315974 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-07 13:50:41] 2026-01-07 18:50:09,026 | INFO     | .. there are 17 such processes running
[2026-01-07 13:50:41] 2026-01-07 18:50:09,830 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-07 13:50:41] 2026-01-07 18:50:09,835 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.788726562499
[2026-01-07 13:50:41] 2026-01-07 18:50:09,847 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962013648/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,848 | INFO     | extracted standard info from prmon json
[2026-01-07 13:50:41] 2026-01-07 18:50:09,848 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 13:50:41] 2026-01-07 18:50:09,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 13:50:41] 2026-01-07 18:50:09,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 13:50:41] 2026-01-07 18:50:09,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 13:50:41] 2026-01-07 18:50:09,849 | INFO     | fitting pss+swap vs Time
[2026-01-07 13:50:41] 2026-01-07 18:50:09,849 | INFO     | sum of square deviations: 120605052.0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,849 | INFO     | sum of deviations: -13359290848.0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,849 | INFO     | mean x: 1767809475.0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,849 | INFO     | mean y: 2714010.821917808
[2026-01-07 13:50:41] 2026-01-07 18:50:09,849 | INFO     | intersect: 195821052867.59872
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | chi2: 0.16400868893759665
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | current memory leak: -110.77 B/s (using 73 data points, chi2=0.16)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | ..............................
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . Timing measurements:
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . get job = 0 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . initial setup = 3 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . payload setup = 18 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . stage-in = 0 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . payload execution = 4838 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . stage-out = 0 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | . log creation = 0 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,850 | INFO     | ..............................
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | 
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | job summary report
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | --------------------------------------------------
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | PanDA job id: 6962013648
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | task id: 47898826
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | errors: (none)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | pilot state: finished 
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | transexitcode: 0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | exeerrorcode: 0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | exeerrordiag: 
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | exitcode: 0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | exitmsg: OK
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | cpuconsumptiontime: 30873 s
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | nevents: 400
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | neventsw: 0
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | pid: 2331619
[2026-01-07 13:50:41] 2026-01-07 18:50:09,900 | INFO     | pgrp: 2331619
[2026-01-07 13:50:41] 2026-01-07 18:50:09,901 | INFO     | corecount: 8
[2026-01-07 13:50:41] 2026-01-07 18:50:09,901 | INFO     | event service: False
[2026-01-07 13:50:41] 2026-01-07 18:50:09,901 | INFO     | sizes: {0: 2283136, 1: 2283992, 11: 2283992, 16: 2284282, 22: 2284310, 4860: 2310602, 4861: 2319783, 4864: 2319783, 4869: 2319977}
[2026-01-07 13:50:41] 2026-01-07 18:50:09,901 | INFO     | --------------------------------------------------
[2026-01-07 13:50:41] 2026-01-07 18:50:09,901 | INFO     | 
[2026-01-07 13:50:41] 2026-01-07 18:50:09,901 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-07 13:50:41] 2026-01-07 18:50:09,919 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,919 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,919 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,919 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,919 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,919 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | job 6962013648 has completed (purged errors)
[2026-01-07 13:50:41] 2026-01-07 18:50:09,920 | INFO     | overall cleanup function is called
[2026-01-07 13:50:41] 2026-01-07 18:50:10,927 | INFO     | --- collectZombieJob: --- 10, [2331619]
[2026-01-07 13:50:41] 2026-01-07 18:50:10,927 | INFO     | zombie collector waiting for pid 2331619
[2026-01-07 13:50:41] 2026-01-07 18:50:10,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 13:50:41] 2026-01-07 18:50:10,928 | INFO     | collected zombie processes
[2026-01-07 13:50:41] 2026-01-07 18:50:10,928 | INFO     | will attempt to kill all subprocesses of pid=2331619
[2026-01-07 13:50:41] 2026-01-07 18:50:11,258 | INFO     | process IDs to be killed: [2331619] (in reverse order)
[2026-01-07 13:50:41] 2026-01-07 18:50:11,368 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 13:50:41] 2026-01-07 18:50:11,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 13:50:41] 2026-01-07 18:50:11,385 | INFO     | did not find any defunct processes belonging to 2331619
[2026-01-07 13:50:41] 2026-01-07 18:50:11,401 | INFO     | did not find any defunct processes belonging to 2331619
[2026-01-07 13:50:41] 2026-01-07 18:50:11,402 | INFO     | ready for new job
[2026-01-07 13:50:41] 2026-01-07 18:50:11,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 13:50:41] 2026-01-07 18:50:11,403 | INFO     | ***************************************
[2026-01-07 13:50:41] 2026-01-07 18:50:11,403 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 13:50:41] 2026-01-07 18:50:11,403 | INFO     | ***************************************
[2026-01-07 13:50:41] 2026-01-07 18:50:11,403 | INFO     | 
[2026-01-07 13:50:41] 2026-01-07 18:50:11,407 | INFO     | architecture information:
[2026-01-07 13:50:41] 2026-01-07 18:50:11,407 | INFO     | executing command: cat /etc/os-release
[2026-01-07 13:50:41] 2026-01-07 18:50:11,419 | INFO     | cat /etc/os-release:
[2026-01-07 13:50:41] NAME="CentOS Linux"
[2026-01-07 13:50:41] VERSION="7 (Core)"
[2026-01-07 13:50:41] ID="centos"
[2026-01-07 13:50:41] ID_LIKE="rhel fedora"
[2026-01-07 13:50:41] VERSION_ID="7"
[2026-01-07 13:50:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 13:50:41] ANSI_COLOR="0;31"
[2026-01-07 13:50:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 13:50:41] HOME_URL="https://www.centos.org/"
[2026-01-07 13:50:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 13:50:41] 
[2026-01-07 13:50:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 13:50:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 13:50:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 13:50:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 13:50:41] 
[2026-01-07 13:50:41] 2026-01-07 18:50:11,419 | INFO     | ***************************************
[2026-01-07 13:50:41] 2026-01-07 18:50:11,920 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-07 13:50:41] 2026-01-07 18:50:11,934 | INFO     | sufficient remaining disk space (173662011392 B)
[2026-01-07 13:50:41] 2026-01-07 18:50:11,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 13:50:41] 2026-01-07 18:50:11,935 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 13:50:41] 2026-01-07 18:50:11,935 | INFO     | update_server=False
[2026-01-07 13:50:41] 2026-01-07 18:50:11,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 13:50:41] 2026-01-07 18:50:11,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 13:50:41] 2026-01-07 18:50:11,935 | INFO     | aborting loop
[2026-01-07 13:50:41] 2026-01-07 18:50:12,277 | INFO     | all data control threads have been joined
[2026-01-07 13:50:41] 2026-01-07 18:50:12,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 13:50:41] 2026-01-07 18:50:12,796 | INFO     | all job control threads have been joined
[2026-01-07 13:50:41] 2026-01-07 18:50:12,939 | INFO     | [job] retrieve thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:12,940 | INFO     | [job] job monitor thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:12,986 | INFO     | all payload control threads have been joined
[2026-01-07 13:50:41] 2026-01-07 18:50:13,101 | INFO     | [data] copytool_in thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:13,282 | INFO     | [data] control thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:13,564 | INFO     | [payload] validate_post thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:13,801 | INFO     | [job] control thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:13,849 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:13,960 | INFO     | [job] validate thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:13,992 | INFO     | [payload] control thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:14,040 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:14,067 | INFO     | [payload] failed_post thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:14,257 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:14,501 | INFO     | [data] copytool_out thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:14,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 13:50:41] 2026-01-07 18:50:15,223 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 13:50:41] 2026-01-07 18:50:15,912 | INFO     | [job] queue monitor thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:19,229 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:22,433 | INFO     | job.realtimelogging is not enabled
[2026-01-07 13:50:41] 2026-01-07 18:50:23,438 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 13:50:41] 2026-01-07 18:50:34,763 | INFO     | [monitor] cgroup control has ended
[2026-01-07 13:50:41] 2026-01-07 18:50:35,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140404734883648)>', '<ExcThread(monitor, started 140404385097472)>']
[2026-01-07 13:50:41] 2026-01-07 18:50:40,321 | INFO     | all workflow threads have been joined
[2026-01-07 13:50:41] 2026-01-07 18:50:40,321 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 13:50:41] 2026-01-07 18:50:40,321 | INFO     | traces error code: 0
[2026-01-07 13:50:41] 2026-01-07 18:50:40,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 13:50:41] 2026-01-07 18:50:41,488 | INFO     | PID=2315974 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-07 13:50:41] 2026-01-07 18:50:41,489 | INFO     | .. there are 17 such processes running
[2026-01-07 13:50:41] 2026-01-07 18:50:41,489 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 13:50:41] 2026-01-07 18:50:41,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 13:50:41] 2026-01-07 18:50:41,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 13:50:41] 2026-01-07 18:50:41,489 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 13:50:41] 2026-01-07 18:50:41,489 | INFO     | [monitor] control thread has ended
[2026-01-07 13:50:41] 2026-01-07 18:50:41,572 [wrapper] ==== pilot stdout END ====
[2026-01-07 13:50:41] 2026-01-07 18:50:41,576 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 13:50:41] 2026-01-07 18:50:41,578 [wrapper] pilotpid: 2315974
[2026-01-07 13:50:41] 2026-01-07 18:50:41,581 [wrapper] Pilot exit status: 0
[2026-01-07 13:50:41] 2026-01-07 18:50:41,592 [wrapper] pandaids: 6962013648
[2026-01-07 13:50:41] 2026-01-07 18:50:41,672 [wrapper] cleanup supervisor_pilot 2538514 2315975
[2026-01-07 13:50:41] 2026-01-07 18:50:41,674 [wrapper] Test setup, not cleaning
[2026-01-07 13:50:41] 2026-01-07 18:50:41,677 [wrapper] apfmon messages muted
[2026-01-07 13:50:41] 2026-01-07 18:50:41,679 [wrapper] ==== wrapper stdout END ====
[2026-01-07 13:50:41] 2026-01-07 18:50:41,682 [wrapper] ==== wrapper stderr END ====
[2026-01-07 13:50:41]  *** Error codes and diagnostics ***
[2026-01-07 13:50:41]     "exeErrorCode": 0,
[2026-01-07 13:50:41]     "exeErrorDiag": "",
[2026-01-07 13:50:41]     "pilotErrorCode": 0,
[2026-01-07 13:50:41]     "pilotErrorDiag": "",
[2026-01-07 13:50:41]  *** Listing of results directory ***
[2026-01-07 13:50:41] total 441660
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-07 13:50:41] -rwx------. 1 boincer umatlas     36322 Jan  7 10:31 runpilot2-wrapper.sh
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 10:31 queuedata.json
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas       100 Jan  7 12:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 13:50:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 12:27 run_atlas
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas       105 Jan  7 12:27 job.xml
[2026-01-07 13:50:41] -rw-r--r--. 2 boincer umatlas 225200931 Jan  7 12:27 EVNT.47898824._000355.pool.root.1
[2026-01-07 13:50:41] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 12:27 start_atlas.sh
[2026-01-07 13:50:41] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 12:27 shared
[2026-01-07 13:50:41] -rw-r--r--. 2 boincer umatlas    592397 Jan  7 12:27 input.tar.gz
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas         0 Jan  7 12:27 boinc_lockfile
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas      2516 Jan  7 12:27 pandaJob.out
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas        57 Jan  7 12:27 setup.sh.local
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas    989801 Jan  7 12:28 agis_schedconf.cvmfs.json
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas   1516240 Jan  7 12:28 agis_ddmendpoints.agis.ALL.json
[2026-01-07 13:50:41] drwx------. 5 boincer umatlas      4096 Jan  7 12:28 pilot3
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas      7179 Jan  7 13:48 init_data.xml
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas 221078242 Jan  7 13:49 HITS.47898826._008448.pool.root.1
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas       529 Jan  7 13:49 boinc_task_state.xml
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas        95 Jan  7 13:49 pilot_heartbeat.json
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas      1034 Jan  7 13:49 memory_monitor_summary.json
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas    335189 Jan  7 13:50 log.47898826._008448.job.log.tgz.1
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas      7782 Jan  7 13:50 heartbeat.json
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas      8192 Jan  7 13:50 boinc_mmap_file
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas        27 Jan  7 13:50 wrapper_checkpoint.txt
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas       823 Jan  7 13:50 pilotlog.txt
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas    696958 Jan  7 13:50 log.47898826._008448.job.log.1
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas       357 Jan  7 13:50 output.list
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas       620 Jan  7 13:50 runtime_log
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas   1054720 Jan  7 13:50 result.tar.gz
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas      9342 Jan  7 13:50 runtime_log.err
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas       652 Jan  7 13:50 LYrNDmAgkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmK7cKDm4MnLPm.diag
[2026-01-07 13:50:41] -rw-r--r--. 1 boincer umatlas     21996 Jan  7 13:50 stderr.txt
[2026-01-07 13:50:41] HITS file was successfully produced:
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas 221078242 Jan  7 13:49 shared/HITS.pool.root.1
[2026-01-07 13:50:41]  *** Contents of shared directory: ***
[2026-01-07 13:50:41] total 437456
[2026-01-07 13:50:41] -rw-r--r--. 2 boincer umatlas 225200931 Jan  7 12:27 ATLAS.root_0
[2026-01-07 13:50:41] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 12:27 start_atlas.sh
[2026-01-07 13:50:41] -rw-r--r--. 2 boincer umatlas    592397 Jan  7 12:27 input.tar.gz
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas 221078242 Jan  7 13:49 HITS.pool.root.1
[2026-01-07 13:50:41] -rw-------. 1 boincer umatlas   1054720 Jan  7 13:50 result.tar.gz
13:50:43 (2309103): run_atlas exited; CPU time 30995.115025
13:50:43 (2309103): called boinc_finish(0)

</stderr_txt>
]]>

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