Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:24 (949732): wrapper (7.7.26015): starting
00:03:24 (949732): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 00:03:24] Arguments: --nthreads 8
[2026-01-08 00:03:24] Threads: 8
[2026-01-08 00:03:24] Checking for CVMFS
[2026-01-08 00:03:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 00:03:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 00:03:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 00:03:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 00:03:27] 2.13.3.0 8866 20402 161624 154891 0 24 34787189 39288833 8419 16776704 0 6596692 99.658 7579359 18070 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 00:03:27] CVMFS is ok
[2026-01-08 00:03:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 00:03:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 00:03:27] Further information can be found at the LHC@home message board.
[2026-01-08 00:03:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 00:03:27] Checking for apptainer binary...
[2026-01-08 00:03:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 00:03:27] Running /usr/bin/apptainer --version
[2026-01-08 00:03:27] apptainer version 1.4.5-2.el9
[2026-01-08 00:03:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 00:03:29] c-211-30.aglt2.org
[2026-01-08 00:03:29] apptainer works
[2026-01-08 00:03:29] Set ATHENA_PROC_NUMBER=8
[2026-01-08 00:03:29] Set ATHENA_CORE_NUMBER=8
[2026-01-08 00:03:29] Starting ATLAS job with PandaID=6962018676
[2026-01-08 00:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:04:04]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:04:04] 2026-01-09 23:02:53,089 | INFO     | sum of deviations: 2695612039454.177
[2026-01-09 18:04:04] 2026-01-09 23:02:53,090 | INFO     | mean x: 1767924293.0821197
[2026-01-09 18:04:04] 2026-01-09 23:02:53,090 | INFO     | mean y: 2523074.866100324
[2026-01-09 18:04:04] 2026-01-09 23:02:53,090 | INFO     | intersect: -1014882582.8749177
[2026-01-09 18:04:04] 2026-01-09 23:02:53,125 | INFO     | chi2: 7.6682981759084745
[2026-01-09 18:04:04] 2026-01-09 23:02:53,151 | INFO     | sum of square deviations: 4655743437235.287
[2026-01-09 18:04:04] 2026-01-09 23:02:53,239 | INFO     | time since job start (151050s) is within the limit (174528.0s)
[2026-01-09 18:04:04] 2026-01-09 23:02:53,463 | INFO     | monitor loop #7963: job 0:6962018676 is in state 'finished'
[2026-01-09 18:04:04] 2026-01-09 23:02:53,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:04:04] 2026-01-09 23:02:54,902 | INFO     | sum of deviations: 3018495148725.8633
[2026-01-09 18:04:04] 2026-01-09 23:02:54,902 | INFO     | mean x: 1767924140.5841103
[2026-01-09 18:04:04] 2026-01-09 23:02:54,902 | INFO     | mean y: 2524808.6801783545
[2026-01-09 18:04:04] 2026-01-09 23:02:54,903 | INFO     | intersect: -1143687501.6866114
[2026-01-09 18:04:04] 2026-01-09 23:02:54,926 | INFO     | chi2: 6.183602030299393
[2026-01-09 18:04:04] 2026-01-09 23:02:54,926 | INFO     | current chi2=6.183602030299393 (change=19.361481668430137 %)
[2026-01-09 18:04:04] 2026-01-09 23:02:54,926 | INFO     | right removable region: 2466
[2026-01-09 18:04:04] 2026-01-09 23:02:54,967 | INFO     | sum of square deviations: 4655741654080.967
[2026-01-09 18:04:04] 2026-01-09 23:02:55,270 | INFO     | time since job start (151052s) is within the limit (174528.0s)
[2026-01-09 18:04:04] 2026-01-09 23:02:56,059 | INFO     | monitor loop #7964: job 0:6962018676 is in state 'finished'
[2026-01-09 18:04:04] 2026-01-09 23:02:56,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:04:04] 2026-01-09 23:02:56,128 | INFO     | sum of deviations: 1922797405118.595
[2026-01-09 18:04:04] 2026-01-09 23:02:56,133 | INFO     | mean x: 1767924445.584921
[2026-01-09 18:04:04] 2026-01-09 23:02:56,133 | INFO     | mean y: 2527229.016214025
[2026-01-09 18:04:04] 2026-01-09 23:02:56,133 | INFO     | intersect: -727616492.2181299
[2026-01-09 18:04:04] 2026-01-09 23:02:56,177 | INFO     | chi2: 4.268999123817989
[2026-01-09 18:04:04] 2026-01-09 23:02:56,177 | INFO     | current chi2=4.268999123817989 (change=44.32924977761139 %)
[2026-01-09 18:04:04] 2026-01-09 23:02:56,203 | INFO     | sum of square deviations: 4627490327361.396
[2026-01-09 18:04:04] 2026-01-09 23:02:57,312 | INFO     | time since job start (151054s) is within the limit (174528.0s)
[2026-01-09 18:04:04] 2026-01-09 23:02:57,757 | INFO     | sum of deviations: 1368132531353.5886
[2026-01-09 18:04:04] 2026-01-09 23:02:57,758 | INFO     | mean x: 1767924598.0869212
[2026-01-09 18:04:04] 2026-01-09 23:02:57,758 | INFO     | mean y: 2530222.7542648255
[2026-01-09 18:04:04] 2026-01-09 23:02:57,758 | INFO     | intersect: -520162421.533144
[2026-01-09 18:04:04] 2026-01-09 23:02:57,806 | INFO     | chi2: 2.5617733691498
[2026-01-09 18:04:04] 2026-01-09 23:02:57,806 | INFO     | current chi2=2.5617733691498 (change=39.99124162717859 %)
[2026-01-09 18:04:04] 2026-01-09 23:02:57,858 | INFO     | sum of square deviations: 4599353514660.823
[2026-01-09 18:04:04] 2026-01-09 23:02:58,717 | INFO     | monitor loop #7965: job 0:6962018676 is in state 'finished'
[2026-01-09 18:04:04] 2026-01-09 23:02:58,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:04:04] 2026-01-09 23:02:59,380 | INFO     | time since job start (151056s) is within the limit (174528.0s)
[2026-01-09 18:04:04] 2026-01-09 23:02:59,559 | INFO     | sum of deviations: 1086763407475.4894
[2026-01-09 18:04:04] 2026-01-09 23:02:59,559 | INFO     | mean x: 1767924750.5889297
[2026-01-09 18:04:04] 2026-01-09 23:02:59,559 | INFO     | mean y: 2531747.5767195765
[2026-01-09 18:04:04] 2026-01-09 23:02:59,559 | INFO     | intersect: -415204336.41550344
[2026-01-09 18:04:04] 2026-01-09 23:02:59,606 | INFO     | chi2: 2.1267068974463355
[2026-01-09 18:04:04] 2026-01-09 23:02:59,606 | INFO     | current chi2=2.1267068974463355 (change=16.983019534153964 %)
[2026-01-09 18:04:04] 2026-01-09 23:02:59,607 | INFO     | left removable region: 30
[2026-01-09 18:04:04] 2026-01-09 23:02:59,655 | INFO     | sum of square deviations: 4482426607635.521
[2026-01-09 18:04:04] 2026-01-09 23:03:00,114 | INFO     | sum of deviations: 924189239410.4923
[2026-01-09 18:04:04] 2026-01-09 23:03:00,115 | INFO     | mean x: 1767925025.096059
[2026-01-09 18:04:04] 2026-01-09 23:03:00,115 | INFO     | mean y: 2536168.1346469624
[2026-01-09 18:04:04] 2026-01-09 23:03:00,115 | INFO     | intersect: -361975608.03031355
[2026-01-09 18:04:04] 2026-01-09 23:03:00,119 | INFO     | chi2: 0.1556247903332001
[2026-01-09 18:04:04] 2026-01-09 23:03:00,119 | INFO     | current memory leak: 0.21 B/s (using 2436 data points, chi2=0.16)
[2026-01-09 18:04:04] 2026-01-09 23:03:00,121 | INFO     | could have reported an average CPU frequency of 2900 MHz (85 samples)
[2026-01-09 18:04:04] 2026-01-09 23:03:00,121 | INFO     | ..............................
[2026-01-09 18:04:04] 2026-01-09 23:03:00,121 | INFO     | . Timing measurements:
[2026-01-09 18:04:04] 2026-01-09 23:03:00,121 | INFO     | . get job = 1 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,121 | INFO     | . initial setup = 10 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,122 | INFO     | . payload setup = 60 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,122 | INFO     | . stage-in = 0 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,122 | INFO     | . payload execution = 150825 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,122 | INFO     | . stage-out = 9 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,122 | INFO     | . log creation = 1 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,122 | INFO     | ..............................
[2026-01-09 18:04:04] 2026-01-09 23:03:00,966 | INFO     | 
[2026-01-09 18:04:04] 2026-01-09 23:03:00,966 | INFO     | job summary report
[2026-01-09 18:04:04] 2026-01-09 23:03:00,966 | INFO     | --------------------------------------------------
[2026-01-09 18:04:04] 2026-01-09 23:03:00,966 | INFO     | PanDA job id: 6962018676
[2026-01-09 18:04:04] 2026-01-09 23:03:00,966 | INFO     | task id: 47898826
[2026-01-09 18:04:04] 2026-01-09 23:03:00,966 | INFO     | errors: (none)
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | pilot state: finished 
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | transexitcode: 0
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | exeerrorcode: 0
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | exeerrordiag: 
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | exitcode: 0
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | exitmsg: OK
[2026-01-09 18:04:04] 2026-01-09 23:03:00,967 | INFO     | cpuconsumptiontime: 114301 s
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | nevents: 400
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | neventsw: 0
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | pid: 961957
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | pgrp: 961957
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | corecount: 8
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | event service: False
[2026-01-09 18:04:04] 2026-01-09 23:03:00,968 | INFO     | sizes: {0: 2283737, 1: 2283793, 2: 2283821, 4: 2284020, 5: 2284048, 6: 2284104, 18: 2284260, 29: 2284288, 41: 2284316, 50: 2284606, 54: 2284634, 150890: 2375246, 1
[2026-01-09 18:04:04] 2026-01-09 23:03:00,969 | INFO     | --------------------------------------------------
[2026-01-09 18:04:04] 2026-01-09 23:03:00,969 | INFO     | 
[2026-01-09 18:04:04] 2026-01-09 23:03:00,969 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 18:04:04] 2026-01-09 23:03:01,445 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,445 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,445 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,445 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,446 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,447 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,447 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,447 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,448 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:04:04] 2026-01-09 23:03:01,448 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,448 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:04:04] 2026-01-09 23:03:01,448 | INFO     | job 6962018676 has completed (purged errors)
[2026-01-09 18:04:04] 2026-01-09 23:03:01,498 | INFO     | overall cleanup function is called
[2026-01-09 18:04:04] 2026-01-09 23:03:02,553 | INFO     | --- collectZombieJob: --- 10, [961957]
[2026-01-09 18:04:04] 2026-01-09 23:03:02,554 | INFO     | zombie collector waiting for pid 961957
[2026-01-09 18:04:04] 2026-01-09 23:03:02,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:04:04] 2026-01-09 23:03:02,554 | INFO     | collected zombie processes
[2026-01-09 18:04:04] 2026-01-09 23:03:02,554 | INFO     | will attempt to kill all subprocesses of pid=961957
[2026-01-09 18:04:04] 2026-01-09 23:03:06,527 | INFO     | PID=953845 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 18:04:04] 2026-01-09 23:03:06,753 | INFO     | .. there are 8 such processes running
[2026-01-09 18:04:04] 2026-01-09 23:03:07,332 | INFO     | process IDs to be killed: [961957] (in reverse order)
[2026-01-09 18:04:04] 2026-01-09 23:03:08,438 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:04:04] 2026-01-09 23:03:08,439 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:04:04] 2026-01-09 23:03:08,589 | INFO     | did not find any defunct processes belonging to 961957
[2026-01-09 18:04:04] 2026-01-09 23:03:08,706 | INFO     | did not find any defunct processes belonging to 961957
[2026-01-09 18:04:04] 2026-01-09 23:03:08,707 | INFO     | ready for new job
[2026-01-09 18:04:04] 2026-01-09 23:03:08,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:04:04] 2026-01-09 23:03:08,853 | INFO     | ***************************************
[2026-01-09 18:04:04] 2026-01-09 23:03:08,853 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:04:04] 2026-01-09 23:03:08,853 | INFO     | ***************************************
[2026-01-09 18:04:04] 2026-01-09 23:03:08,854 | INFO     | 
[2026-01-09 18:04:04] 2026-01-09 23:03:08,856 | INFO     | architecture information:
[2026-01-09 18:04:04] 2026-01-09 23:03:08,921 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:04:04] 2026-01-09 23:03:09,115 | INFO     | cat /etc/os-release:
[2026-01-09 18:04:04] NAME="CentOS Linux"
[2026-01-09 18:04:04] VERSION="7 (Core)"
[2026-01-09 18:04:04] ID="centos"
[2026-01-09 18:04:04] ID_LIKE="rhel fedora"
[2026-01-09 18:04:04] VERSION_ID="7"
[2026-01-09 18:04:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:04:04] ANSI_COLOR="0;31"
[2026-01-09 18:04:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:04:04] HOME_URL="https://www.centos.org/"
[2026-01-09 18:04:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:04:04] 
[2026-01-09 18:04:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:04:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:04:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:04:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:04:04] 
[2026-01-09 18:04:04] 2026-01-09 23:03:09,115 | INFO     | ***************************************
[2026-01-09 18:04:04] 2026-01-09 23:03:09,619 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 18:04:04] 2026-01-09 23:03:09,793 | INFO     | sufficient remaining disk space (51154780160 B)
[2026-01-09 18:04:04] 2026-01-09 23:03:09,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:04:04] 2026-01-09 23:03:09,794 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:04:04] 2026-01-09 23:03:09,794 | INFO     | update_server=False
[2026-01-09 18:04:04] 2026-01-09 23:03:09,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:04:04] 2026-01-09 23:03:09,811 | INFO     | all payload control threads have been joined
[2026-01-09 18:04:04] 2026-01-09 23:03:09,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:04:04] 2026-01-09 23:03:10,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:04:04] 2026-01-09 23:03:10,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:04:04] 2026-01-09 23:03:10,179 | INFO     | aborting loop
[2026-01-09 18:04:04] 2026-01-09 23:03:10,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:04:04] 2026-01-09 23:03:10,578 | INFO     | all job control threads have been joined
[2026-01-09 18:04:04] 2026-01-09 23:03:10,761 | INFO     | all data control threads have been joined
[2026-01-09 18:04:04] 2026-01-09 23:03:10,801 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:10,817 | INFO     | [payload] control thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:10,862 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:10,980 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,075 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,133 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,218 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,386 | INFO     | [job] validate thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,395 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,419 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,477 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,584 | INFO     | [job] control thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,613 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,767 | INFO     | [data] control thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:11,824 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:14,402 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:04:04] 2026-01-09 23:03:19,839 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:04:04] 2026-01-09 23:03:20,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021501925184)>', '<ExcThread(monitor, started 140020950226688)>']
[2026-01-09 18:04:04] 2026-01-09 23:03:25,504 | INFO     | all workflow threads have been joined
[2026-01-09 18:04:04] 2026-01-09 23:03:25,505 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:04:04] 2026-01-09 23:03:25,505 | INFO     | traces error code: 0
[2026-01-09 18:04:04] 2026-01-09 23:03:25,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:04:04] 2026-01-09 23:03:43,137 | INFO     | PID=953845 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 18:04:04] 2026-01-09 23:03:43,138 | INFO     | .. there are 8 such processes running
[2026-01-09 18:04:04] 2026-01-09 23:03:43,138 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:04:04] 2026-01-09 23:03:43,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:04:04] 2026-01-09 23:03:43,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:04:04] 2026-01-09 23:03:43,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:04:04] 2026-01-09 23:03:43,139 | INFO     | [monitor] control thread has ended
[2026-01-09 18:04:04] 2026-01-09 23:03:43,412 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:04:04] 2026-01-09 23:03:43,465 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:04:04] 2026-01-09 23:03:43,513 [wrapper] pilotpid: 953845
[2026-01-09 18:04:04] 2026-01-09 23:03:43,579 [wrapper] Pilot exit status: 0
[2026-01-09 18:04:04] 2026-01-09 23:03:43,745 [wrapper] pandaids: 6962018676
[2026-01-09 18:04:04] 2026-01-09 23:03:44,381 [wrapper] cleanup supervisor_pilot  539973 953846
[2026-01-09 18:04:04] 2026-01-09 23:03:44,434 [wrapper] Test setup, not cleaning
[2026-01-09 18:04:04] 2026-01-09 23:03:44,477 [wrapper] apfmon messages muted
[2026-01-09 18:04:04] 2026-01-09 23:03:44,544 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:04:04] 2026-01-09 23:03:44,595 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:04:04]  *** Error codes and diagnostics ***
[2026-01-09 18:04:04]     "exeErrorCode": 0,
[2026-01-09 18:04:04]     "exeErrorDiag": "",
[2026-01-09 18:04:04]     "pilotErrorCode": 0,
[2026-01-09 18:04:04]     "pilotErrorDiag": "",
[2026-01-09 18:04:04]  *** Listing of results directory ***
[2026-01-09 18:04:04] total 482824
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-09 18:04:04] -rwx------. 1 boincer umatlas     36322 Jan  7 10:35 runpilot2-wrapper.sh
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 10:38 queuedata.json
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas       100 Jan  8 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:04:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 00:03 run_atlas
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas       105 Jan  8 00:03 job.xml
[2026-01-09 18:04:04] -rw-r--r--. 2 boincer umatlas 227985376 Jan  8 00:03 EVNT.47898824._000540.pool.root.1
[2026-01-09 18:04:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 00:03 start_atlas.sh
[2026-01-09 18:04:04] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 00:03 shared
[2026-01-09 18:04:04] -rw-r--r--. 2 boincer umatlas    592398 Jan  8 00:03 input.tar.gz
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas         0 Jan  8 00:03 boinc_lockfile
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas      2516 Jan  8 00:03 pandaJob.out
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas        57 Jan  8 00:03 setup.sh.local
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas    989835 Jan  8 00:05 agis_schedconf.cvmfs.json
[2026-01-09 18:04:04] drwx------. 5 boincer umatlas      4096 Jan  8 00:05 pilot3
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas      6523 Jan  9 17:57 init_data.xml
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas 223498538 Jan  9 17:59 HITS.47898826._010492.pool.root.1
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas       533 Jan  9 17:59 boinc_task_state.xml
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas      1042 Jan  9 18:01 memory_monitor_summary.json
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas   1516240 Jan  9 18:02 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas   2091065 Jan  9 18:02 log.47898826._010492.job.log.tgz.1
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas        95 Jan  9 18:02 pilot_heartbeat.json
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas      7827 Jan  9 18:03 heartbeat.json
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas       821 Jan  9 18:03 pilotlog.txt
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas  17416140 Jan  9 18:03 log.47898826._010492.job.log.1
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas       357 Jan  9 18:03 output.list
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas       620 Jan  9 18:03 runtime_log
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas  19527680 Jan  9 18:03 result.tar.gz
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas      9344 Jan  9 18:03 runtime_log.err
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas       662 Jan  9 18:03 qjkLDmUkkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJRiKDmT2Nctm.diag
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 18:04 boinc_mmap_file
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas        30 Jan  9 18:04 wrapper_checkpoint.txt
[2026-01-09 18:04:04] -rw-r--r--. 1 boincer umatlas     21455 Jan  9 18:04 stderr.txt
[2026-01-09 18:04:04] HITS file was successfully produced:
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas 223498538 Jan  9 17:59 shared/HITS.pool.root.1
[2026-01-09 18:04:04]  *** Contents of shared directory: ***
[2026-01-09 18:04:04] total 460580
[2026-01-09 18:04:04] -rw-r--r--. 2 boincer umatlas 227985376 Jan  8 00:03 ATLAS.root_0
[2026-01-09 18:04:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 00:03 start_atlas.sh
[2026-01-09 18:04:04] -rw-r--r--. 2 boincer umatlas    592398 Jan  8 00:03 input.tar.gz
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas 223498538 Jan  9 17:59 HITS.pool.root.1
[2026-01-09 18:04:04] -rw-------. 1 boincer umatlas  19527680 Jan  9 18:03 result.tar.gz
18:04:06 (949732): run_atlas exited; CPU time 119752.638892
18:04:06 (949732): called boinc_finish(0)

</stderr_txt>
]]>

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