Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:25:30 (1381813): wrapper (7.7.26015): starting
03:25:30 (1381813): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 03:25:30] Arguments: --nthreads 4
[2026-01-08 03:25:30] Threads: 4
[2026-01-08 03:25:30] Checking for CVMFS
[2026-01-08 03:25:30] No cvmfs_config command found, will try listing directly
[2026-01-08 03:25:30] CVMFS is ok
[2026-01-08 03:25:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 03:25:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 03:25:30] Further information can be found at the LHC@home message board.
[2026-01-08 03:25:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 03:25:30] Checking for apptainer binary...
[2026-01-08 03:25:30] which: no apptainer in ((null))
[2026-01-08 03:25:30] apptainer is not installed, using version from CVMFS
[2026-01-08 03:25:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 03:25:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-01-08 03:25:30] apptainer works
[2026-01-08 03:25:30] Set ATHENA_PROC_NUMBER=4
[2026-01-08 03:25:30] Set ATHENA_CORE_NUMBER=4
[2026-01-08 03:25:30] Starting ATLAS job with PandaID=6962017211
[2026-01-08 03:25:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:55:18 (1554564): wrapper (7.7.26015): starting
07:55:18 (1554564): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 07:55:18] Arguments: --nthreads 4
[2026-01-08 07:55:18] Threads: 4
[2026-01-08 07:55:18] This job has been restarted, cleaning up previous attempt
[2026-01-08 07:55:18] Checking for CVMFS
[2026-01-08 07:55:18] No cvmfs_config command found, will try listing directly
[2026-01-08 07:55:18] CVMFS is ok
[2026-01-08 07:55:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 07:55:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 07:55:18] Further information can be found at the LHC@home message board.
[2026-01-08 07:55:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:55:18] Checking for apptainer binary...
[2026-01-08 07:55:18] which: no apptainer in ((null))
[2026-01-08 07:55:18] apptainer is not installed, using version from CVMFS
[2026-01-08 07:55:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:55:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-01-08 07:55:19] apptainer works
[2026-01-08 07:55:19] Set ATHENA_PROC_NUMBER=4
[2026-01-08 07:55:19] Set ATHENA_CORE_NUMBER=4
[2026-01-08 07:55:19] Starting ATLAS job with PandaID=6962017211
[2026-01-08 07:55:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 12:59:36]  *** The last 200 lines of the pilot log: ***
[2026-01-08 12:59:36] 2026-01-08 11:56:42,548 | INFO     | intersect: -7586817747.21409
[2026-01-08 12:59:36] 2026-01-08 11:56:42,549 | INFO     | chi2: 1.2627418841647402
[2026-01-08 12:59:36] 2026-01-08 11:56:42,549 | INFO     | sum of square deviations: 7641036290.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,552 | INFO     | sum of deviations: 34023112584.000004
[2026-01-08 12:59:36] 2026-01-08 11:56:42,552 | INFO     | mean x: 1767864202.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,552 | INFO     | mean y: 2352218.171821306
[2026-01-08 12:59:36] 2026-01-08 11:56:42,553 | INFO     | intersect: -7869386705.066472
[2026-01-08 12:59:36] 2026-01-08 11:56:42,553 | INFO     | chi2: 1.2630505357958803
[2026-01-08 12:59:36] 2026-01-08 11:56:42,553 | INFO     | current chi2=1.2630505357958803 (change=-0.0244429708882505 %)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,553 | INFO     | right removable region: 290
[2026-01-08 12:59:36] 2026-01-08 11:56:42,554 | INFO     | sum of square deviations: 7641036290.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,556 | INFO     | sum of deviations: 4122817248.0000014
[2026-01-08 12:59:36] 2026-01-08 11:56:42,557 | INFO     | mean x: 1767864507.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,557 | INFO     | mean y: 2363838.7903780066
[2026-01-08 12:59:36] 2026-01-08 11:56:42,557 | INFO     | intersect: -951509694.1917065
[2026-01-08 12:59:36] 2026-01-08 11:56:42,557 | INFO     | chi2: 0.06510907770258621
[2026-01-08 12:59:36] 2026-01-08 11:56:42,557 | INFO     | current chi2=0.06510907770258621 (change=94.84383320779341 %)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,558 | INFO     | sum of square deviations: 7253894147.5
[2026-01-08 12:59:36] 2026-01-08 11:56:42,560 | INFO     | sum of deviations: 13284370037.999998
[2026-01-08 12:59:36] 2026-01-08 11:56:42,560 | INFO     | mean x: 1767864659.5
[2026-01-08 12:59:36] 2026-01-08 11:56:42,561 | INFO     | mean y: 2360229.3006993006
[2026-01-08 12:59:36] 2026-01-08 11:56:42,561 | INFO     | intersect: -3235206770.7629547
[2026-01-08 12:59:36] 2026-01-08 11:56:42,561 | INFO     | chi2: 0.022379477050903387
[2026-01-08 12:59:36] 2026-01-08 11:56:42,561 | INFO     | current chi2=0.022379477050903387 (change=65.62771607189508 %)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,562 | INFO     | sum of square deviations: 6880054580.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,564 | INFO     | sum of deviations: 16606173106.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,564 | INFO     | mean x: 1767864812.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,565 | INFO     | mean y: 2358882.1708185053
[2026-01-08 12:59:36] 2026-01-08 11:56:42,565 | INFO     | intersect: -4264681263.327293
[2026-01-08 12:59:36] 2026-01-08 11:56:42,565 | INFO     | chi2: 0.00973559955550853
[2026-01-08 12:59:36] 2026-01-08 11:56:42,565 | INFO     | current chi2=0.00973559955550853 (change=56.49764499248862 %)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,566 | INFO     | sum of square deviations: 6519285025.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,568 | INFO     | sum of deviations: 17137346771.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,568 | INFO     | mean x: 1767864964.5
[2026-01-08 12:59:36] 2026-01-08 11:56:42,568 | INFO     | mean y: 2358666.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,569 | INFO     | intersect: -4644855687.223972
[2026-01-08 12:59:36] 2026-01-08 11:56:42,569 | INFO     | chi2: 0.005846814406177594
[2026-01-08 12:59:36] 2026-01-08 11:56:42,569 | INFO     | current chi2=0.005846814406177594 (change=39.943971885435765 %)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,570 | INFO     | sum of square deviations: 6171352920.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,572 | INFO     | sum of deviations: 15774939221.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,572 | INFO     | mean x: 1767865117.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,572 | INFO     | mean y: 2359262.335793358
[2026-01-08 12:59:36] 2026-01-08 11:56:42,573 | INFO     | intersect: -4516579312.903079
[2026-01-08 12:59:36] 2026-01-08 11:56:42,573 | INFO     | chi2: 0.005716143756826094
[2026-01-08 12:59:36] 2026-01-08 11:56:42,573 | INFO     | current chi2=0.005716143756826094 (change=2.234903321258781 %)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,573 | INFO     | left removable region: 50
[2026-01-08 12:59:36] 2026-01-08 11:56:42,574 | INFO     | sum of square deviations: 4286517580.0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,576 | INFO     | sum of deviations: 10928519995.5
[2026-01-08 12:59:36] 2026-01-08 11:56:42,576 | INFO     | mean x: 1767865696.5
[2026-01-08 12:59:36] 2026-01-08 11:56:42,576 | INFO     | mean y: 2361546.0791666666
[2026-01-08 12:59:36] 2026-01-08 11:56:42,576 | INFO     | intersect: -4504829956.809475
[2026-01-08 12:59:36] 2026-01-08 11:56:42,576 | INFO     | chi2: 0.005326161384122869
[2026-01-08 12:59:36] 2026-01-08 11:56:42,577 | INFO     | current memory leak: 2.55 B/s (using 240 data points, chi2=0.01)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,577 | INFO     | could have reported an average CPU frequency of 2590 MHz (13 samples)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | ..............................
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . Timing measurements:
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . get job = 0 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . initial setup = 1 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . payload setup = 5 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . stage-in = 0 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . payload execution = 18037 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . stage-out = 1 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | . log creation = 0 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,578 | INFO     | ..............................
[2026-01-08 12:59:36] 2026-01-08 11:56:42,688 | INFO     | 
[2026-01-08 12:59:36] 2026-01-08 11:56:42,689 | INFO     | job summary report
[2026-01-08 12:59:36] 2026-01-08 11:56:42,689 | INFO     | --------------------------------------------------
[2026-01-08 12:59:36] 2026-01-08 11:56:42,689 | INFO     | PanDA job id: 6962017211
[2026-01-08 12:59:36] 2026-01-08 11:56:42,689 | INFO     | task id: 47898826
[2026-01-08 12:59:36] 2026-01-08 11:56:42,689 | INFO     | errors: (none)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,689 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | pilot state: finished 
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | transexitcode: 0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | exeerrorcode: 0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | exeerrordiag: 
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | exitcode: 0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | exitmsg: OK
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | cpuconsumptiontime: 69214 s
[2026-01-08 12:59:36] 2026-01-08 11:56:42,690 | INFO     | nevents: 400
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | neventsw: 0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | pid: 1565647
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | pgrp: 1565647
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | corecount: 4
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | event service: False
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | sizes: {0: 2283804, 1: 2284003, 5: 2284265, 11: 2284321, 18047: 2316685, 18050: 2325889, 18057: 2326027}
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | --------------------------------------------------
[2026-01-08 12:59:36] 2026-01-08 11:56:42,691 | INFO     | 
[2026-01-08 12:59:36] 2026-01-08 11:56:42,692 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2026-01-08 12:59:36] 2026-01-08 11:56:42,712 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,713 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,713 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,713 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,713 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 12:59:36] 2026-01-08 11:56:42,715 | INFO     | job 6962017211 has completed (purged errors)
[2026-01-08 12:59:36] 2026-01-08 11:56:42,716 | INFO     | overall cleanup function is called
[2026-01-08 12:59:36] 2026-01-08 11:56:43,724 | INFO     | --- collectZombieJob: --- 10, [1565647]
[2026-01-08 12:59:36] 2026-01-08 11:56:43,724 | INFO     | zombie collector waiting for pid 1565647
[2026-01-08 12:59:36] 2026-01-08 11:56:43,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 12:59:36] 2026-01-08 11:56:43,724 | INFO     | collected zombie processes
[2026-01-08 12:59:36] 2026-01-08 11:56:43,724 | INFO     | will attempt to kill all subprocesses of pid=1565647
[2026-01-08 12:59:36] 2026-01-08 11:56:44,077 | INFO     | process IDs to be killed: [1565647] (in reverse order)
[2026-01-08 12:59:36] 2026-01-08 11:56:44,161 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 12:59:36] 2026-01-08 11:56:44,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 12:59:36] 2026-01-08 11:56:44,171 | INFO     | did not find any defunct processes belonging to 1565647
[2026-01-08 12:59:36] 2026-01-08 11:56:44,181 | INFO     | did not find any defunct processes belonging to 1565647
[2026-01-08 12:59:36] 2026-01-08 11:56:44,181 | INFO     | ready for new job
[2026-01-08 12:59:36] 2026-01-08 11:56:44,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 12:59:36] 2026-01-08 11:56:44,183 | INFO     | ***************************************
[2026-01-08 12:59:36] 2026-01-08 11:56:44,184 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 12:59:36] 2026-01-08 11:56:44,184 | INFO     | ***************************************
[2026-01-08 12:59:36] 2026-01-08 11:56:44,184 | INFO     | 
[2026-01-08 12:59:36] 2026-01-08 11:56:44,186 | INFO     | architecture information:
[2026-01-08 12:59:36] 2026-01-08 11:56:44,187 | INFO     | executing command: cat /etc/os-release
[2026-01-08 12:59:36] 2026-01-08 11:56:44,202 | INFO     | cat /etc/os-release:
[2026-01-08 12:59:36] NAME="CentOS Linux"
[2026-01-08 12:59:36] VERSION="7 (Core)"
[2026-01-08 12:59:36] ID="centos"
[2026-01-08 12:59:36] ID_LIKE="rhel fedora"
[2026-01-08 12:59:36] VERSION_ID="7"
[2026-01-08 12:59:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 12:59:36] ANSI_COLOR="0;31"
[2026-01-08 12:59:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 12:59:36] HOME_URL="https://www.centos.org/"
[2026-01-08 12:59:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 12:59:36] 
[2026-01-08 12:59:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 12:59:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 12:59:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 12:59:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 12:59:36] 
[2026-01-08 12:59:36] 2026-01-08 11:56:44,202 | INFO     | ***************************************
[2026-01-08 12:59:36] 2026-01-08 11:56:44,705 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2026-01-08 12:59:36] 2026-01-08 11:56:44,722 | INFO     | sufficient remaining disk space (1674421731328 B)
[2026-01-08 12:59:36] 2026-01-08 11:56:44,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 12:59:36] 2026-01-08 11:56:44,723 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 12:59:36] 2026-01-08 11:56:44,723 | INFO     | update_server=False
[2026-01-08 12:59:36] 2026-01-08 11:56:44,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 12:59:36] 2026-01-08 11:56:44,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 12:59:36] 2026-01-08 11:56:44,724 | INFO     | aborting loop
[2026-01-08 12:59:36] 2026-01-08 11:56:45,108 | INFO     | all data control threads have been joined
[2026-01-08 12:59:36] 2026-01-08 11:56:45,314 | INFO     | all payload control threads have been joined
[2026-01-08 12:59:36] 2026-01-08 11:56:45,488 | INFO     | all job control threads have been joined
[2026-01-08 12:59:36] 2026-01-08 11:56:45,729 | INFO     | [job] retrieve thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:45,729 | INFO     | [job] job monitor thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:45,991 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,114 | INFO     | [data] control thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 12:59:36] 2026-01-08 11:56:46,320 | INFO     | [payload] control thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,428 | INFO     | [job] validate thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,493 | INFO     | [job] control thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,537 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,628 | INFO     | [payload] failed_post thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,684 | INFO     | [data] copytool_in thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:46,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 12:59:36] 2026-01-08 11:56:47,073 | INFO     | [payload] validate_post thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:47,090 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:47,699 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 12:59:36] 2026-01-08 11:56:48,153 | INFO     | [data] copytool_out thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:48,704 | INFO     | [job] queue monitor thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:50,733 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:55,648 | INFO     | job.realtimelogging is not enabled
[2026-01-08 12:59:36] 2026-01-08 11:56:56,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 12:59:36] 2026-01-08 11:56:59,923 | INFO     | [monitor] cgroup control has ended
[2026-01-08 12:59:36] 2026-01-08 11:57:00,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22995946772288)>', '<ExcThread(monitor, started 22995707852544)>']
[2026-01-08 12:59:36] 2026-01-08 11:57:05,953 | INFO     | all workflow threads have been joined
[2026-01-08 12:59:36] 2026-01-08 11:57:05,953 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 12:59:36] 2026-01-08 11:57:05,954 | INFO     | traces error code: 0
[2026-01-08 12:59:36] 2026-01-08 11:57:05,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 12:59:36] 2026-01-08 11:57:15,172 | INFO     | PID=1558545 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 12:59:36] 2026-01-08 11:57:15,172 | INFO     | .. there are 2 such processes running
[2026-01-08 12:59:36] 2026-01-08 11:57:15,173 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 12:59:36] 2026-01-08 11:57:15,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 12:59:36] 2026-01-08 11:57:15,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 12:59:36] 2026-01-08 11:57:15,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 12:59:36] 2026-01-08 11:57:15,173 | INFO     | [monitor] control thread has ended
[2026-01-08 12:59:36] 2026-01-08 11:57:15,337 [wrapper] ==== pilot stdout END ====
[2026-01-08 12:59:36] 2026-01-08 11:57:15,341 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 12:59:36] 2026-01-08 11:57:15,343 [wrapper] pilotpid: 1558545
[2026-01-08 12:59:36] 2026-01-08 11:57:15,346 [wrapper] Pilot exit status: 0
[2026-01-08 12:59:36] 2026-01-08 11:57:15,356 [wrapper] pandaids: 6962017211 6962017211
[2026-01-08 12:59:36] 2026-01-08 11:57:15,415 [wrapper] cleanup supervisor_pilot 1736489 1558546
[2026-01-08 12:59:36] 2026-01-08 11:57:15,418 [wrapper] Test setup, not cleaning
[2026-01-08 12:59:36] 2026-01-08 11:57:15,420 [wrapper] apfmon messages muted
[2026-01-08 12:59:36] 2026-01-08 11:57:15,423 [wrapper] ==== wrapper stdout END ====
[2026-01-08 12:59:36] 2026-01-08 11:57:15,425 [wrapper] ==== wrapper stderr END ====
[2026-01-08 12:59:36]  *** Error codes and diagnostics ***
[2026-01-08 12:59:36]     "exeErrorCode": 0,
[2026-01-08 12:59:36]     "exeErrorDiag": "",
[2026-01-08 12:59:36]     "pilotErrorCode": 0,
[2026-01-08 12:59:36]     "pilotErrorDiag": "",
[2026-01-08 12:59:36]  *** Listing of results directory ***
[2026-01-08 12:59:36] total 667168
[2026-01-08 12:59:36] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 12:59:36] -rwx------ 1 boinc boinc     36322 Jan  7 16:34 runpilot2-wrapper.sh
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:38 queuedata.json
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc       100 Jan  8 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 12:59:36] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 03:25 run_atlas
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc       105 Jan  8 03:25 job.xml
[2026-01-08 12:59:36] -rw-r--r-- 3 boinc boinc 225381235 Jan  8 03:25 EVNT.47898824._000498.pool.root.1
[2026-01-08 12:59:36] -rw-r--r-- 3 boinc boinc 225381235 Jan  8 03:25 ATLAS.root_0
[2026-01-08 12:59:36] -rw-r--r-- 2 boinc boinc     15847 Jan  8 03:25 start_atlas.sh
[2026-01-08 12:59:36] drwxrwx--x 2 boinc boinc      4096 Jan  8 03:25 shared
[2026-01-08 12:59:36] -rw-r--r-- 2 boinc boinc    592391 Jan  8 03:25 input.tar.gz
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc         0 Jan  8 03:25 boinc_lockfile
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc      2516 Jan  8 07:55 pandaJob.out
[2026-01-08 12:59:36] -rw------- 1 boinc boinc    989827 Jan  8 07:55 agis_schedconf.cvmfs.json
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc      6429 Jan  8 09:26 init_data.xml
[2026-01-08 12:59:36] -rw------- 1 boinc boinc 222480867 Jan  8 12:55 HITS.47898826._009874.pool.root.1
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc       529 Jan  8 12:56 boinc_task_state.xml
[2026-01-08 12:59:36] -rw------- 1 boinc boinc        97 Jan  8 12:56 pilot_heartbeat.json
[2026-01-08 12:59:36] -rw------- 1 boinc boinc      1036 Jan  8 12:56 memory_monitor_summary.json
[2026-01-08 12:59:36] -rw------- 1 boinc boinc   1516240 Jan  8 12:56 agis_ddmendpoints.agis.ALL.json
[2026-01-08 12:59:36] -rw------- 1 boinc boinc    468435 Jan  8 12:56 log.47898826._009874.job.log.tgz.1
[2026-01-08 12:59:36] -rw------- 1 boinc boinc      7833 Jan  8 12:56 heartbeat.json
[2026-01-08 12:59:36] -rw------- 1 boinc boinc       822 Jan  8 12:57 pilotlog.txt
[2026-01-08 12:59:36] -rw------- 1 boinc boinc   2548284 Jan  8 12:57 log.47898826._009874.job.log.1
[2026-01-08 12:59:36] -rw------- 1 boinc boinc       357 Jan  8 12:57 output.list
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc       620 Jan  8 12:57 runtime_log
[2026-01-08 12:59:36] -rw------- 1 boinc boinc   3031040 Jan  8 12:57 result.tar.gz
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc      9283 Jan  8 12:57 runtime_log.err
[2026-01-08 12:59:36] -rw------- 1 boinc boinc       791 Jan  8 12:57 nsWMDmtjkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4MiKDm4D7sWn.diag
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc        28 Jan  8 12:59 wrapper_checkpoint.txt
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc      8192 Jan  8 12:59 boinc_mmap_file
[2026-01-08 12:59:36] -rw-r--r-- 1 boinc boinc     22594 Jan  8 12:59 stderr.txt
[2026-01-08 12:59:36] HITS file was successfully produced:
[2026-01-08 12:59:36] -rw------- 1 boinc boinc 222480867 Jan  8 12:55 shared/HITS.pool.root.1
[2026-01-08 12:59:36]  *** Contents of shared directory: ***
[2026-01-08 12:59:36] total 440928
[2026-01-08 12:59:36] -rw-r--r-- 3 boinc boinc 225381235 Jan  8 03:25 ATLAS.root_0
[2026-01-08 12:59:36] -rw-r--r-- 2 boinc boinc     15847 Jan  8 03:25 start_atlas.sh
[2026-01-08 12:59:36] -rw-r--r-- 2 boinc boinc    592391 Jan  8 03:25 input.tar.gz
[2026-01-08 12:59:36] -rw------- 1 boinc boinc 222480867 Jan  8 12:55 HITS.pool.root.1
[2026-01-08 12:59:36] -rw------- 1 boinc boinc   3031040 Jan  8 12:57 result.tar.gz
12:59:38 (1554564): run_atlas exited; CPU time 69916.781281
12:59:38 (1554564): called boinc_finish(0)

</stderr_txt>
]]>

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