Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:47:28 (1299230): wrapper (7.7.26015): starting
02:47:28 (1299230): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 02:47:28] Arguments: --nthreads 4
[2026-01-09 02:47:28] Threads: 4
[2026-01-09 02:47:28] Checking for CVMFS
[2026-01-09 02:47:28] No cvmfs_config command found, will try listing directly
[2026-01-09 02:47:28] CVMFS is ok
[2026-01-09 02:47:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 02:47:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 02:47:28] Further information can be found at the LHC@home message board.
[2026-01-09 02:47:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 02:47:28] Checking for apptainer binary...
[2026-01-09 02:47:28] which: no apptainer in ((null))
[2026-01-09 02:47:28] apptainer is not installed, using version from CVMFS
[2026-01-09 02:47:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 02:47:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2026-01-09 02:47:28] apptainer works
[2026-01-09 02:47:29] Set ATHENA_PROC_NUMBER=4
[2026-01-09 02:47:29] Set ATHENA_CORE_NUMBER=4
[2026-01-09 02:47:29] Starting ATLAS job with PandaID=6962017336
[2026-01-09 02:47:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:15:17]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:15:17] 2026-01-09 07:11:17,072 | INFO     | monitor loop #1400: job 0:6962017336 is in state 'finished'
[2026-01-09 08:15:17] 2026-01-09 07:11:17,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,714 | INFO     | PID=1302973 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 08:15:17] 2026-01-09 07:11:17,937 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 08:15:17] 2026-01-09 07:11:17,945 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2445.24455
[2026-01-09 08:15:17] 2026-01-09 07:11:17,954 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6962017336/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,955 | INFO     | extracted standard info from prmon json
[2026-01-09 08:15:17] 2026-01-09 07:11:17,955 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:15:17] 2026-01-09 07:11:17,955 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:15:17] 2026-01-09 07:11:17,955 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:15:17] 2026-01-09 07:11:17,955 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:15:17] 2026-01-09 07:11:17,962 | INFO     | fitting pss+swap vs Time
[2026-01-09 08:15:17] 2026-01-09 07:11:17,962 | INFO     | sum of square deviations: 9971385099.5
[2026-01-09 08:15:17] 2026-01-09 07:11:17,965 | INFO     | sum of deviations: -43472134035.00001
[2026-01-09 08:15:17] 2026-01-09 07:11:17,966 | INFO     | mean x: 1767932956.5
[2026-01-09 08:15:17] 2026-01-09 07:11:17,966 | INFO     | mean y: 2385453.2704402516
[2026-01-09 08:15:17] 2026-01-09 07:11:17,966 | INFO     | intersect: 7710022625.333493
[2026-01-09 08:15:17] 2026-01-09 07:11:17,966 | INFO     | chi2: 2.4549022450357536
[2026-01-09 08:15:17] 2026-01-09 07:11:17,967 | INFO     | sum of square deviations: 9508390372.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,970 | INFO     | sum of deviations: -22652871123.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,970 | INFO     | mean x: 1767932804.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,970 | INFO     | mean y: 2392225.833865815
[2026-01-09 08:15:17] 2026-01-09 07:11:17,970 | INFO     | intersect: 4214330566.21483
[2026-01-09 08:15:17] 2026-01-09 07:11:17,971 | INFO     | chi2: 1.6711760553874122
[2026-01-09 08:15:17] 2026-01-09 07:11:17,971 | INFO     | current chi2=1.6711760553874122 (change=31.924944923292742 %)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,972 | INFO     | sum of square deviations: 9059954057.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,974 | INFO     | sum of deviations: -22363176358.499996
[2026-01-09 08:15:17] 2026-01-09 07:11:17,975 | INFO     | mean x: 1767932651.5
[2026-01-09 08:15:17] 2026-01-09 07:11:17,975 | INFO     | mean y: 2392324.3603896103
[2026-01-09 08:15:17] 2026-01-09 07:11:17,975 | INFO     | intersect: 4366276448.573782
[2026-01-09 08:15:17] 2026-01-09 07:11:17,976 | INFO     | chi2: 1.6702285996971047
[2026-01-09 08:15:17] 2026-01-09 07:11:17,976 | INFO     | current chi2=1.6702285996971047 (change=0.056693948387614976 %)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,976 | INFO     | right removable region: 307
[2026-01-09 08:15:17] 2026-01-09 07:11:17,976 | INFO     | sum of square deviations: 9508390372.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,979 | INFO     | sum of deviations: -77891995072.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,980 | INFO     | mean x: 1767933109.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,980 | INFO     | mean y: 2396666.271565495
[2026-01-09 08:15:17] 2026-01-09 07:11:17,980 | INFO     | intersect: 14485167316.850996
[2026-01-09 08:15:17] 2026-01-09 07:11:17,980 | INFO     | chi2: 1.2005188383518297
[2026-01-09 08:15:17] 2026-01-09 07:11:17,981 | INFO     | current chi2=1.2005188383518297 (change=51.09708173596358 %)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,981 | INFO     | sum of square deviations: 9059954057.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,984 | INFO     | sum of deviations: -66694641427.499985
[2026-01-09 08:15:17] 2026-01-09 07:11:17,984 | INFO     | mean x: 1767933261.5
[2026-01-09 08:15:17] 2026-01-09 07:11:17,984 | INFO     | mean y: 2392850.2824675324
[2026-01-09 08:15:17] 2026-01-09 07:11:17,985 | INFO     | intersect: 13016992505.166021
[2026-01-09 08:15:17] 2026-01-09 07:11:17,985 | INFO     | chi2: 1.1743847950123507
[2026-01-09 08:15:17] 2026-01-09 07:11:17,985 | INFO     | current chi2=1.1743847950123507 (change=2.1768957307956907 %)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,985 | INFO     | left removable region: 20
[2026-01-09 08:15:17] 2026-01-09 07:11:17,986 | INFO     | sum of square deviations: 7330250928.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,989 | INFO     | sum of deviations: -15102310825.999992
[2026-01-09 08:15:17] 2026-01-09 07:11:17,989 | INFO     | mean x: 1767933231.0
[2026-01-09 08:15:17] 2026-01-09 07:11:17,989 | INFO     | mean y: 2388584.4773519165
[2026-01-09 08:15:17] 2026-01-09 07:11:17,989 | INFO     | intersect: 3644811938.9342356
[2026-01-09 08:15:17] 2026-01-09 07:11:17,990 | INFO     | chi2: 0.2247791478125179
[2026-01-09 08:15:17] 2026-01-09 07:11:17,990 | INFO     | current memory leak: -2.06 B/s (using 287 data points, chi2=0.22)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,990 | INFO     | could have reported an average CPU frequency of 2409 MHz (14 samples)
[2026-01-09 08:15:17] 2026-01-09 07:11:17,991 | INFO     | ..............................
[2026-01-09 08:15:17] 2026-01-09 07:11:17,991 | INFO     | . Timing measurements:
[2026-01-09 08:15:17] 2026-01-09 07:11:17,991 | INFO     | . get job = 0 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,991 | INFO     | . initial setup = 1 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,991 | INFO     | . payload setup = 6 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,991 | INFO     | . stage-in = 0 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,992 | INFO     | . payload execution = 19382 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,992 | INFO     | . stage-out = 1 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,992 | INFO     | . log creation = 0 s
[2026-01-09 08:15:17] 2026-01-09 07:11:17,992 | INFO     | ..............................
[2026-01-09 08:15:17] 2026-01-09 07:11:18,423 | INFO     | 
[2026-01-09 08:15:17] 2026-01-09 07:11:18,424 | INFO     | job summary report
[2026-01-09 08:15:17] 2026-01-09 07:11:18,424 | INFO     | --------------------------------------------------
[2026-01-09 08:15:17] 2026-01-09 07:11:18,424 | INFO     | PanDA job id: 6962017336
[2026-01-09 08:15:17] 2026-01-09 07:11:18,424 | INFO     | task id: 47898826
[2026-01-09 08:15:17] 2026-01-09 07:11:18,424 | INFO     | errors: (none)
[2026-01-09 08:15:17] 2026-01-09 07:11:18,424 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:15:17] 2026-01-09 07:11:18,425 | INFO     | pilot state: finished 
[2026-01-09 08:15:17] 2026-01-09 07:11:18,425 | INFO     | transexitcode: 0
[2026-01-09 08:15:17] 2026-01-09 07:11:18,425 | INFO     | exeerrorcode: 0
[2026-01-09 08:15:17] 2026-01-09 07:11:18,425 | INFO     | exeerrordiag: 
[2026-01-09 08:15:17] 2026-01-09 07:11:18,425 | INFO     | exitcode: 0
[2026-01-09 08:15:17] 2026-01-09 07:11:18,425 | INFO     | exitmsg: OK
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | cpuconsumptiontime: 74920 s
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | nevents: 400
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | neventsw: 0
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | pid: 1309737
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | pgrp: 1309737
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | corecount: 4
[2026-01-09 08:15:17] 2026-01-09 07:11:18,426 | INFO     | event service: False
[2026-01-09 08:15:17] 2026-01-09 07:11:18,427 | INFO     | sizes: {0: 2283975, 1: 2283975, 5: 2284265, 11: 2284321, 19392: 2317246, 19393: 2317245, 19394: 2326449, 19395: 2326505, 19401: 2326699}
[2026-01-09 08:15:17] 2026-01-09 07:11:18,427 | INFO     | --------------------------------------------------
[2026-01-09 08:15:17] 2026-01-09 07:11:18,427 | INFO     | 
[2026-01-09 08:15:17] 2026-01-09 07:11:18,427 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2026-01-09 08:15:17] 2026-01-09 07:11:18,449 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,450 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,450 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,450 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,451 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,452 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,452 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,452 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,452 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:15:17] 2026-01-09 07:11:18,453 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,453 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:15:17] 2026-01-09 07:11:18,453 | INFO     | job 6962017336 has completed (purged errors)
[2026-01-09 08:15:17] 2026-01-09 07:11:18,453 | INFO     | overall cleanup function is called
[2026-01-09 08:15:17] 2026-01-09 07:11:19,461 | INFO     | --- collectZombieJob: --- 10, [1309737]
[2026-01-09 08:15:17] 2026-01-09 07:11:19,462 | INFO     | zombie collector waiting for pid 1309737
[2026-01-09 08:15:17] 2026-01-09 07:11:19,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:15:17] 2026-01-09 07:11:19,462 | INFO     | collected zombie processes
[2026-01-09 08:15:17] 2026-01-09 07:11:19,462 | INFO     | will attempt to kill all subprocesses of pid=1309737
[2026-01-09 08:15:17] 2026-01-09 07:11:19,857 | INFO     | process IDs to be killed: [1309737] (in reverse order)
[2026-01-09 08:15:17] 2026-01-09 07:11:19,950 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:15:17] 2026-01-09 07:11:19,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:15:17] 2026-01-09 07:11:19,961 | INFO     | did not find any defunct processes belonging to 1309737
[2026-01-09 08:15:17] 2026-01-09 07:11:19,971 | INFO     | did not find any defunct processes belonging to 1309737
[2026-01-09 08:15:17] 2026-01-09 07:11:19,972 | INFO     | ready for new job
[2026-01-09 08:15:17] 2026-01-09 07:11:19,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:15:17] 2026-01-09 07:11:19,975 | INFO     | ***************************************
[2026-01-09 08:15:17] 2026-01-09 07:11:19,975 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:15:17] 2026-01-09 07:11:19,975 | INFO     | ***************************************
[2026-01-09 08:15:17] 2026-01-09 07:11:19,975 | INFO     | 
[2026-01-09 08:15:17] 2026-01-09 07:11:19,978 | INFO     | architecture information:
[2026-01-09 08:15:17] 2026-01-09 07:11:19,978 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:15:17] 2026-01-09 07:11:19,992 | INFO     | cat /etc/os-release:
[2026-01-09 08:15:17] NAME="CentOS Linux"
[2026-01-09 08:15:17] VERSION="7 (Core)"
[2026-01-09 08:15:17] ID="centos"
[2026-01-09 08:15:17] ID_LIKE="rhel fedora"
[2026-01-09 08:15:17] VERSION_ID="7"
[2026-01-09 08:15:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:15:17] ANSI_COLOR="0;31"
[2026-01-09 08:15:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:15:17] HOME_URL="https://www.centos.org/"
[2026-01-09 08:15:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:15:17] 
[2026-01-09 08:15:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:15:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:15:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:15:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:15:17] 
[2026-01-09 08:15:17] 2026-01-09 07:11:19,993 | INFO     | ***************************************
[2026-01-09 08:15:17] 2026-01-09 07:11:20,496 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2026-01-09 08:15:17] 2026-01-09 07:11:20,512 | INFO     | sufficient remaining disk space (1666013200384 B)
[2026-01-09 08:15:17] 2026-01-09 07:11:20,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:15:17] 2026-01-09 07:11:20,513 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:15:17] 2026-01-09 07:11:20,513 | INFO     | update_server=False
[2026-01-09 08:15:17] 2026-01-09 07:11:20,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:15:17] 2026-01-09 07:11:20,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:15:17] 2026-01-09 07:11:20,586 | INFO     | aborting loop
[2026-01-09 08:15:17] 2026-01-09 07:11:20,635 | INFO     | all data control threads have been joined
[2026-01-09 08:15:17] 2026-01-09 07:11:21,372 | INFO     | all job control threads have been joined
[2026-01-09 08:15:17] 2026-01-09 07:11:21,518 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:21,559 | INFO     | [job] validate thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:21,590 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:21,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:15:17] 2026-01-09 07:11:21,640 | INFO     | [data] control thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:21,861 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:21,877 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:21,973 | INFO     | all payload control threads have been joined
[2026-01-09 08:15:17] 2026-01-09 07:11:22,244 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:22,287 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:15:17] 2026-01-09 07:11:22,297 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:22,377 | INFO     | [job] control thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:22,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:22,978 | INFO     | [payload] control thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:22,983 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:23,014 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:23,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:15:17] 2026-01-09 07:11:23,603 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:24,120 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:26,293 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:15:17] 2026-01-09 07:11:50,227 | INFO     | PID=1302973 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 08:15:17] 2026-01-09 07:11:50,228 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:15:17] 2026-01-09 07:11:50,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:15:17] 2026-01-09 07:11:50,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:15:17] 2026-01-09 07:12:12,300 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:15:17] 2026-01-09 07:12:13,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22589195360064)>', '<ExcThread(monitor, started 22588958934784)>']
[2026-01-09 08:15:17] 2026-01-09 07:12:14,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:15:17] 2026-01-09 07:12:14,333 | INFO     | [monitor] control thread has ended
[2026-01-09 08:15:17] 2026-01-09 07:12:18,978 | INFO     | all workflow threads have been joined
[2026-01-09 08:15:17] 2026-01-09 07:12:18,978 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:15:17] 2026-01-09 07:12:18,978 | INFO     | traces error code: 0
[2026-01-09 08:15:17] 2026-01-09 07:12:18,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:15:17] 2026-01-09 07:12:19,114 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:15:17] 2026-01-09 07:12:19,117 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:15:17] 2026-01-09 07:12:19,120 [wrapper] pilotpid: 1302973
[2026-01-09 08:15:17] 2026-01-09 07:12:19,123 [wrapper] Pilot exit status: 0
[2026-01-09 08:15:17] 2026-01-09 07:12:19,133 [wrapper] pandaids: 6962017336
[2026-01-09 08:15:17] 2026-01-09 07:12:19,204 [wrapper] cleanup supervisor_pilot 1480259 1302974
[2026-01-09 08:15:17] 2026-01-09 07:12:19,207 [wrapper] Test setup, not cleaning
[2026-01-09 08:15:17] 2026-01-09 07:12:19,209 [wrapper] apfmon messages muted
[2026-01-09 08:15:17] 2026-01-09 07:12:19,212 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:15:17] 2026-01-09 07:12:19,214 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:15:17]  *** Error codes and diagnostics ***
[2026-01-09 08:15:17]     "exeErrorCode": 0,
[2026-01-09 08:15:17]     "exeErrorDiag": "",
[2026-01-09 08:15:17]     "pilotErrorCode": 0,
[2026-01-09 08:15:17]     "pilotErrorDiag": "",
[2026-01-09 08:15:17]  *** Listing of results directory ***
[2026-01-09 08:15:17] total 443828
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-09 08:15:17] -rwx------ 1 boinc boinc     36322 Jan  7 16:35 runpilot2-wrapper.sh
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:36 queuedata.json
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc       100 Jan  9 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:15:17] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 02:47 run_atlas
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc       105 Jan  9 02:47 job.xml
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc      6423 Jan  9 02:47 init_data.xml
[2026-01-09 08:15:17] -rw-r--r-- 2 boinc boinc 224433219 Jan  9 02:47 EVNT.47898824._000503.pool.root.1
[2026-01-09 08:15:17] -rw-r--r-- 2 boinc boinc     15847 Jan  9 02:47 start_atlas.sh
[2026-01-09 08:15:17] drwxrwx--x 2 boinc boinc      4096 Jan  9 02:47 shared
[2026-01-09 08:15:17] -rw-r--r-- 2 boinc boinc    592394 Jan  9 02:47 input.tar.gz
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc         0 Jan  9 02:47 boinc_lockfile
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc      2516 Jan  9 02:47 pandaJob.out
[2026-01-09 08:15:17] -rw------- 1 boinc boinc    989821 Jan  9 02:47 agis_schedconf.cvmfs.json
[2026-01-09 08:15:17] drwx------ 5 boinc boinc      4096 Jan  9 02:47 pilot3
[2026-01-09 08:15:17] -rw------- 1 boinc boinc 219826309 Jan  9 08:10 HITS.47898826._009999.pool.root.1
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc       529 Jan  9 08:10 boinc_task_state.xml
[2026-01-09 08:15:17] -rw------- 1 boinc boinc      1049 Jan  9 08:11 memory_monitor_summary.json
[2026-01-09 08:15:17] -rw------- 1 boinc boinc   1516240 Jan  9 08:11 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:15:17] -rw------- 1 boinc boinc    480763 Jan  9 08:11 log.47898826._009999.job.log.tgz.1
[2026-01-09 08:15:17] -rw------- 1 boinc boinc        95 Jan  9 08:11 pilot_heartbeat.json
[2026-01-09 08:15:17] -rw------- 1 boinc boinc      7824 Jan  9 08:11 heartbeat.json
[2026-01-09 08:15:17] -rw------- 1 boinc boinc      4759 Jan  9 08:12 pilotlog.txt
[2026-01-09 08:15:17] -rw------- 1 boinc boinc   2672210 Jan  9 08:12 log.47898826._009999.job.log.1
[2026-01-09 08:15:17] -rw------- 1 boinc boinc       357 Jan  9 08:12 output.list
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc       620 Jan  9 08:12 runtime_log
[2026-01-09 08:15:17] -rw------- 1 boinc boinc   3174400 Jan  9 08:12 result.tar.gz
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc      9206 Jan  9 08:12 runtime_log.err
[2026-01-09 08:15:17] -rw------- 1 boinc boinc       666 Jan  9 08:12 LVQKDm4jkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDJdKDmVRscPo.diag
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc        26 Jan  9 08:14 wrapper_checkpoint.txt
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc      8192 Jan  9 08:15 boinc_mmap_file
[2026-01-09 08:15:17] -rw-r--r-- 1 boinc boinc     21049 Jan  9 08:15 stderr.txt
[2026-01-09 08:15:17] HITS file was successfully produced:
[2026-01-09 08:15:17] -rw------- 1 boinc boinc 219826309 Jan  9 08:10 shared/HITS.pool.root.1
[2026-01-09 08:15:17]  *** Contents of shared directory: ***
[2026-01-09 08:15:17] total 437552
[2026-01-09 08:15:17] -rw-r--r-- 2 boinc boinc 224433219 Jan  9 02:47 ATLAS.root_0
[2026-01-09 08:15:17] -rw-r--r-- 2 boinc boinc     15847 Jan  9 02:47 start_atlas.sh
[2026-01-09 08:15:17] -rw-r--r-- 2 boinc boinc    592394 Jan  9 02:47 input.tar.gz
[2026-01-09 08:15:17] -rw------- 1 boinc boinc 219826309 Jan  9 08:10 HITS.pool.root.1
[2026-01-09 08:15:17] -rw------- 1 boinc boinc   3174400 Jan  9 08:12 result.tar.gz
08:15:19 (1299230): run_atlas exited; CPU time 75708.062167
08:15:19 (1299230): called boinc_finish(0)

</stderr_txt>
]]>

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