Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:49:18 (1770459): wrapper (7.7.26015): starting
08:49:18 (1770459): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 08:49:18] Arguments: --nthreads 4
[2026-01-08 08:49:18] Threads: 4
[2026-01-08 08:49:18] Checking for CVMFS
[2026-01-08 08:49:18] No cvmfs_config command found, will try listing directly
[2026-01-08 08:49:18] CVMFS is ok
[2026-01-08 08:49:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 08:49:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 08:49:18] Further information can be found at the LHC@home message board.
[2026-01-08 08:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 08:49:18] Checking for apptainer binary...
[2026-01-08 08:49:18] which: no apptainer in ((null))
[2026-01-08 08:49:18] apptainer is not installed, using version from CVMFS
[2026-01-08 08:49:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 08:49:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2026-01-08 08:49:18] apptainer works
[2026-01-08 08:49:18] Set ATHENA_PROC_NUMBER=4
[2026-01-08 08:49:18] Set ATHENA_CORE_NUMBER=4
[2026-01-08 08:49:18] Starting ATLAS job with PandaID=6962016953
[2026-01-08 08:49:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 14:13:22]  *** The last 200 lines of the pilot log: ***
[2026-01-08 14:13:22] 2026-01-08 13:03:05,875 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 14:13:22] 2026-01-08 13:03:06,881 | INFO     | time since job start (18816s) is within the limit (174528.0s)
[2026-01-08 14:13:22] 2026-01-08 13:03:08,173 | INFO     | monitor loop #1364: job 0:6962016953 is in state 'finished'
[2026-01-08 14:13:22] 2026-01-08 13:03:08,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 14:13:22] 2026-01-08 13:03:08,886 | INFO     | time since job start (18818s) is within the limit (174528.0s)
[2026-01-08 14:13:22] 2026-01-08 13:03:10,678 | INFO     | monitor loop #1365: job 0:6962016953 is in state 'finished'
[2026-01-08 14:13:22] 2026-01-08 13:03:10,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 14:13:22] 2026-01-08 13:03:10,891 | INFO     | time since job start (18820s) is within the limit (174528.0s)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,373 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 14:13:22] 2026-01-08 13:03:11,380 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2607.82215
[2026-01-08 14:13:22] 2026-01-08 13:03:11,389 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6962016953/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,389 | INFO     | extracted standard info from prmon json
[2026-01-08 14:13:22] 2026-01-08 13:03:11,390 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 14:13:22] 2026-01-08 13:03:11,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 14:13:22] 2026-01-08 13:03:11,390 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 14:13:22] 2026-01-08 13:03:11,390 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 14:13:22] 2026-01-08 13:03:11,397 | INFO     | fitting pss+swap vs Time
[2026-01-08 14:13:22] 2026-01-08 13:03:11,398 | INFO     | sum of square deviations: 9059954057.0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,401 | INFO     | sum of deviations: -8330400035.000004
[2026-01-08 14:13:22] 2026-01-08 13:03:11,401 | INFO     | mean x: 1767867960.5
[2026-01-08 14:13:22] 2026-01-08 13:03:11,401 | INFO     | mean y: 2348535.448051948
[2026-01-08 14:13:22] 2026-01-08 13:03:11,401 | INFO     | intersect: 1627858690.0658906
[2026-01-08 14:13:22] 2026-01-08 13:03:11,402 | INFO     | chi2: 1.518077083222065
[2026-01-08 14:13:22] 2026-01-08 13:03:11,402 | INFO     | sum of square deviations: 8625843592.0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,405 | INFO     | sum of deviations: -8396352441.99996
[2026-01-08 14:13:22] 2026-01-08 13:03:11,405 | INFO     | mean x: 1767867808.0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,405 | INFO     | mean y: 2348512.2805280527
[2026-01-08 14:13:22] 2026-01-08 13:03:11,405 | INFO     | intersect: 1723182078.124521
[2026-01-08 14:13:22] 2026-01-08 13:03:11,406 | INFO     | chi2: 1.517570148957727
[2026-01-08 14:13:22] 2026-01-08 13:03:11,406 | INFO     | current chi2=1.517570148957727 (change=0.03339318338579095 %)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,407 | INFO     | right removable region: 302
[2026-01-08 14:13:22] 2026-01-08 13:03:11,407 | INFO     | sum of square deviations: 8625843592.0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,410 | INFO     | sum of deviations: -40343701211.0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,410 | INFO     | mean x: 1767868113.0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,410 | INFO     | mean y: 2359653.412541254
[2026-01-08 14:13:22] 2026-01-08 13:03:11,410 | INFO     | intersect: 8270808086.383662
[2026-01-08 14:13:22] 2026-01-08 13:03:11,411 | INFO     | chi2: 0.29512597508873406
[2026-01-08 14:13:22] 2026-01-08 13:03:11,411 | INFO     | current chi2=0.29512597508873406 (change=80.55922335232546 %)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,412 | INFO     | sum of square deviations: 8205826414.5
[2026-01-08 14:13:22] 2026-01-08 13:03:11,414 | INFO     | sum of deviations: -29968285386.999996
[2026-01-08 14:13:22] 2026-01-08 13:03:11,415 | INFO     | mean x: 1767868265.5
[2026-01-08 14:13:22] 2026-01-08 13:03:11,415 | INFO     | mean y: 2355880.33557047
[2026-01-08 14:13:22] 2026-01-08 13:03:11,415 | INFO     | intersect: 6458741627.602547
[2026-01-08 14:13:22] 2026-01-08 13:03:11,415 | INFO     | chi2: 0.2642581343619107
[2026-01-08 14:13:22] 2026-01-08 13:03:11,416 | INFO     | current chi2=0.2642581343619107 (change=10.459208382976957 %)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,416 | INFO     | left removable region: 20
[2026-01-08 14:13:22] 2026-01-08 13:03:11,416 | INFO     | sum of square deviations: 6953769450.5
[2026-01-08 14:13:22] 2026-01-08 13:03:11,419 | INFO     | sum of deviations: 2582550198.499997
[2026-01-08 14:13:22] 2026-01-08 13:03:11,419 | INFO     | mean x: 1767868387.5
[2026-01-08 14:13:22] 2026-01-08 13:03:11,419 | INFO     | mean y: 2343162.7978723403
[2026-01-08 14:13:22] 2026-01-08 13:03:11,419 | INFO     | intersect: -654222874.8828437
[2026-01-08 14:13:22] 2026-01-08 13:03:11,420 | INFO     | chi2: 0.04600127705172698
[2026-01-08 14:13:22] 2026-01-08 13:03:11,420 | INFO     | current memory leak: 0.37 B/s (using 282 data points, chi2=0.05)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,421 | INFO     | could have reported an average CPU frequency of 2552 MHz (14 samples)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,421 | INFO     | ..............................
[2026-01-08 14:13:22] 2026-01-08 13:03:11,421 | INFO     | . Timing measurements:
[2026-01-08 14:13:22] 2026-01-08 13:03:11,421 | INFO     | . get job = 0 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,421 | INFO     | . initial setup = 1 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,421 | INFO     | . payload setup = 6 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,422 | INFO     | . stage-in = 0 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,422 | INFO     | . payload execution = 18785 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,422 | INFO     | . stage-out = 1 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,422 | INFO     | . log creation = 0 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,422 | INFO     | ..............................
[2026-01-08 14:13:22] 2026-01-08 13:03:11,531 | INFO     | 
[2026-01-08 14:13:22] 2026-01-08 13:03:11,531 | INFO     | job summary report
[2026-01-08 14:13:22] 2026-01-08 13:03:11,531 | INFO     | --------------------------------------------------
[2026-01-08 14:13:22] 2026-01-08 13:03:11,531 | INFO     | PanDA job id: 6962016953
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | task id: 47898826
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | errors: (none)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | pilot state: finished 
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | transexitcode: 0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | exeerrorcode: 0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | exeerrordiag: 
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | exitcode: 0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,532 | INFO     | exitmsg: OK
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | cpuconsumptiontime: 72063 s
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | nevents: 400
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | neventsw: 0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | pid: 1781233
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | pgrp: 1781233
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | corecount: 4
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | event service: False
[2026-01-08 14:13:22] 2026-01-08 13:03:11,533 | INFO     | sizes: {0: 2283136, 1: 2284003, 6: 2284265, 12: 2284293, 18795: 2316789, 18797: 2325809, 18799: 2325993, 18805: 2326187}
[2026-01-08 14:13:22] 2026-01-08 13:03:11,534 | INFO     | --------------------------------------------------
[2026-01-08 14:13:22] 2026-01-08 13:03:11,534 | INFO     | 
[2026-01-08 14:13:22] 2026-01-08 13:03:11,534 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2026-01-08 14:13:22] 2026-01-08 13:03:11,552 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,553 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,553 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,553 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,555 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 14:13:22] 2026-01-08 13:03:11,556 | INFO     | job 6962016953 has completed (purged errors)
[2026-01-08 14:13:22] 2026-01-08 13:03:11,556 | INFO     | overall cleanup function is called
[2026-01-08 14:13:22] 2026-01-08 13:03:12,563 | INFO     | --- collectZombieJob: --- 10, [1781233]
[2026-01-08 14:13:22] 2026-01-08 13:03:12,563 | INFO     | zombie collector waiting for pid 1781233
[2026-01-08 14:13:22] 2026-01-08 13:03:12,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 14:13:22] 2026-01-08 13:03:12,564 | INFO     | collected zombie processes
[2026-01-08 14:13:22] 2026-01-08 13:03:12,564 | INFO     | will attempt to kill all subprocesses of pid=1781233
[2026-01-08 14:13:22] 2026-01-08 13:03:12,906 | INFO     | process IDs to be killed: [1781233] (in reverse order)
[2026-01-08 14:13:22] 2026-01-08 13:03:12,992 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 14:13:22] 2026-01-08 13:03:12,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 14:13:22] 2026-01-08 13:03:13,002 | INFO     | did not find any defunct processes belonging to 1781233
[2026-01-08 14:13:22] 2026-01-08 13:03:13,011 | INFO     | did not find any defunct processes belonging to 1781233
[2026-01-08 14:13:22] 2026-01-08 13:03:13,011 | INFO     | ready for new job
[2026-01-08 14:13:22] 2026-01-08 13:03:13,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 14:13:22] 2026-01-08 13:03:13,014 | INFO     | ***************************************
[2026-01-08 14:13:22] 2026-01-08 13:03:13,014 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 14:13:22] 2026-01-08 13:03:13,014 | INFO     | ***************************************
[2026-01-08 14:13:22] 2026-01-08 13:03:13,014 | INFO     | 
[2026-01-08 14:13:22] 2026-01-08 13:03:13,017 | INFO     | architecture information:
[2026-01-08 14:13:22] 2026-01-08 13:03:13,017 | INFO     | executing command: cat /etc/os-release
[2026-01-08 14:13:22] 2026-01-08 13:03:13,030 | INFO     | cat /etc/os-release:
[2026-01-08 14:13:22] NAME="CentOS Linux"
[2026-01-08 14:13:22] VERSION="7 (Core)"
[2026-01-08 14:13:22] ID="centos"
[2026-01-08 14:13:22] ID_LIKE="rhel fedora"
[2026-01-08 14:13:22] VERSION_ID="7"
[2026-01-08 14:13:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 14:13:22] ANSI_COLOR="0;31"
[2026-01-08 14:13:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 14:13:22] HOME_URL="https://www.centos.org/"
[2026-01-08 14:13:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 14:13:22] 
[2026-01-08 14:13:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 14:13:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 14:13:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 14:13:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 14:13:22] 
[2026-01-08 14:13:22] 2026-01-08 13:03:13,031 | INFO     | ***************************************
[2026-01-08 14:13:22] 2026-01-08 13:03:13,534 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2026-01-08 14:13:22] 2026-01-08 13:03:13,550 | INFO     | sufficient remaining disk space (1670429802496 B)
[2026-01-08 14:13:22] 2026-01-08 13:03:13,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 14:13:22] 2026-01-08 13:03:13,551 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 14:13:22] 2026-01-08 13:03:13,551 | INFO     | update_server=False
[2026-01-08 14:13:22] 2026-01-08 13:03:13,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 14:13:22] 2026-01-08 13:03:13,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 14:13:22] 2026-01-08 13:03:13,749 | INFO     | all job control threads have been joined
[2026-01-08 14:13:22] 2026-01-08 13:03:14,121 | INFO     | all data control threads have been joined
[2026-01-08 14:13:22] 2026-01-08 13:03:14,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 14:13:22] 2026-01-08 13:03:14,187 | INFO     | aborting loop
[2026-01-08 14:13:22] 2026-01-08 13:03:14,556 | INFO     | [job] retrieve thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:14,557 | INFO     | all payload control threads have been joined
[2026-01-08 14:13:22] 2026-01-08 13:03:14,640 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:14,661 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:14,750 | INFO     | [job] control thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,126 | INFO     | [data] control thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,193 | INFO     | [job] job monitor thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,247 | INFO     | [payload] validate_post thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,347 | INFO     | [data] copytool_in thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,557 | INFO     | [data] copytool_out thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,563 | INFO     | [payload] control thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,567 | INFO     | [payload] failed_post thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,764 | INFO     | [job] validate thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,836 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:15,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 14:13:22] 2026-01-08 13:03:16,545 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 14:13:22] 2026-01-08 13:03:17,551 | INFO     | [job] queue monitor thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:19,906 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:23,665 | INFO     | job.realtimelogging is not enabled
[2026-01-08 14:13:22] 2026-01-08 13:03:24,670 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 14:13:22] 2026-01-08 13:03:44,419 | INFO     | PID=1774497 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 14:13:22] 2026-01-08 13:03:44,420 | INFO     | .. there are 2 such processes running
[2026-01-08 14:13:22] 2026-01-08 13:03:44,421 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 14:13:22] 2026-01-08 13:03:44,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 14:13:22] 2026-01-08 13:03:44,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 14:13:22] 2026-01-08 13:04:00,913 | INFO     | [monitor] cgroup control has ended
[2026-01-08 14:13:22] 2026-01-08 13:04:01,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22380032231232)>', '<ExcThread(monitor, started 22379583473408)>']
[2026-01-08 14:13:22] 2026-01-08 13:04:02,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 14:13:22] 2026-01-08 13:04:02,507 | INFO     | [monitor] control thread has ended
[2026-01-08 14:13:22] 2026-01-08 13:04:06,989 | INFO     | all workflow threads have been joined
[2026-01-08 14:13:22] 2026-01-08 13:04:06,989 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 14:13:22] 2026-01-08 13:04:06,990 | INFO     | traces error code: 0
[2026-01-08 14:13:22] 2026-01-08 13:04:06,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 14:13:22] 2026-01-08 13:04:07,121 [wrapper] ==== pilot stdout END ====
[2026-01-08 14:13:22] 2026-01-08 13:04:07,124 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 14:13:22] 2026-01-08 13:04:07,126 [wrapper] pilotpid: 1774497
[2026-01-08 14:13:22] 2026-01-08 13:04:07,129 [wrapper] Pilot exit status: 0
[2026-01-08 14:13:22] 2026-01-08 13:04:07,139 [wrapper] pandaids: 6962016953
[2026-01-08 14:13:22] 2026-01-08 13:04:07,199 [wrapper] cleanup supervisor_pilot 1991656 1774498
[2026-01-08 14:13:22] 2026-01-08 13:04:07,202 [wrapper] Test setup, not cleaning
[2026-01-08 14:13:22] 2026-01-08 13:04:07,204 [wrapper] apfmon messages muted
[2026-01-08 14:13:22] 2026-01-08 13:04:07,207 [wrapper] ==== wrapper stdout END ====
[2026-01-08 14:13:22] 2026-01-08 13:04:07,209 [wrapper] ==== wrapper stderr END ====
[2026-01-08 14:13:22]  *** Error codes and diagnostics ***
[2026-01-08 14:13:22]     "exeErrorCode": 0,
[2026-01-08 14:13:22]     "exeErrorDiag": "",
[2026-01-08 14:13:22]     "pilotErrorCode": 0,
[2026-01-08 14:13:22]     "pilotErrorDiag": "",
[2026-01-08 14:13:22]  *** Listing of results directory ***
[2026-01-08 14:13:22] total 441400
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 14:13:22] -rwx------ 1 boinc boinc     36322 Jan  7 16:33 runpilot2-wrapper.sh
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:36 queuedata.json
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc       100 Jan  8 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 14:13:22] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 08:49 run_atlas
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc       105 Jan  8 08:49 job.xml
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc      6424 Jan  8 08:49 init_data.xml
[2026-01-08 14:13:22] -rw-r--r-- 2 boinc boinc 226207883 Jan  8 08:49 EVNT.47898824._000489.pool.root.1
[2026-01-08 14:13:22] -rw-r--r-- 2 boinc boinc     15847 Jan  8 08:49 start_atlas.sh
[2026-01-08 14:13:22] drwxrwx--x 2 boinc boinc      4096 Jan  8 08:49 shared
[2026-01-08 14:13:22] -rw-r--r-- 2 boinc boinc    592391 Jan  8 08:49 input.tar.gz
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc         0 Jan  8 08:49 boinc_lockfile
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc      2516 Jan  8 08:49 pandaJob.out
[2026-01-08 14:13:22] -rw------- 1 boinc boinc    989819 Jan  8 08:49 agis_schedconf.cvmfs.json
[2026-01-08 14:13:22] drwx------ 5 boinc boinc      4096 Jan  8 08:49 pilot3
[2026-01-08 14:13:22] -rw------- 1 boinc boinc 215663867 Jan  8 14:02 HITS.47898826._009635.pool.root.1
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc       528 Jan  8 14:02 boinc_task_state.xml
[2026-01-08 14:13:22] -rw------- 1 boinc boinc      1038 Jan  8 14:02 memory_monitor_summary.json
[2026-01-08 14:13:22] -rw------- 1 boinc boinc   1516240 Jan  8 14:03 agis_ddmendpoints.agis.ALL.json
[2026-01-08 14:13:22] -rw------- 1 boinc boinc    457955 Jan  8 14:03 log.47898826._009635.job.log.tgz.1
[2026-01-08 14:13:22] -rw------- 1 boinc boinc      7829 Jan  8 14:03 heartbeat.json
[2026-01-08 14:13:22] -rw------- 1 boinc boinc        95 Jan  8 14:03 pilot_heartbeat.json
[2026-01-08 14:13:22] -rw------- 1 boinc boinc      4906 Jan  8 14:04 pilotlog.txt
[2026-01-08 14:13:22] -rw------- 1 boinc boinc   2649601 Jan  8 14:04 log.47898826._009635.job.log.1
[2026-01-08 14:13:22] -rw------- 1 boinc boinc       357 Jan  8 14:04 output.list
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc       620 Jan  8 14:04 runtime_log
[2026-01-08 14:13:22] -rw------- 1 boinc boinc   3123200 Jan  8 14:04 result.tar.gz
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc      9206 Jan  8 14:04 runtime_log.err
[2026-01-08 14:13:22] -rw------- 1 boinc boinc       666 Jan  8 14:04 UVsNDmbikx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLLiKDmSbgJtm.diag
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc        26 Jan  8 14:12 wrapper_checkpoint.txt
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc      8192 Jan  8 14:13 boinc_mmap_file
[2026-01-08 14:13:22] -rw-r--r-- 1 boinc boinc     21187 Jan  8 14:13 stderr.txt
[2026-01-08 14:13:22] HITS file was successfully produced:
[2026-01-08 14:13:22] -rw------- 1 boinc boinc 215663867 Jan  8 14:02 shared/HITS.pool.root.1
[2026-01-08 14:13:22]  *** Contents of shared directory: ***
[2026-01-08 14:13:22] total 435172
[2026-01-08 14:13:22] -rw-r--r-- 2 boinc boinc 226207883 Jan  8 08:49 ATLAS.root_0
[2026-01-08 14:13:22] -rw-r--r-- 2 boinc boinc     15847 Jan  8 08:49 start_atlas.sh
[2026-01-08 14:13:22] -rw-r--r-- 2 boinc boinc    592391 Jan  8 08:49 input.tar.gz
[2026-01-08 14:13:22] -rw------- 1 boinc boinc 215663867 Jan  8 14:02 HITS.pool.root.1
[2026-01-08 14:13:22] -rw------- 1 boinc boinc   3123200 Jan  8 14:04 result.tar.gz
14:13:24 (1770459): run_atlas exited; CPU time 72789.378413
14:13:24 (1770459): called boinc_finish(0)

</stderr_txt>
]]>

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