Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:08:03 (1713268): wrapper (7.7.26015): starting
07:08:03 (1713268): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 07:08:03] Arguments: --nthreads 4
[2026-01-08 07:08:03] Threads: 4
[2026-01-08 07:08:03] Checking for CVMFS
[2026-01-08 07:08:03] No cvmfs_config command found, will try listing directly
[2026-01-08 07:08:03] CVMFS is ok
[2026-01-08 07:08:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 07:08:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 07:08:03] Further information can be found at the LHC@home message board.
[2026-01-08 07:08:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 07:08:03] Checking for apptainer binary...
[2026-01-08 07:08:03] which: no apptainer in ((null))
[2026-01-08 07:08:03] apptainer is not installed, using version from CVMFS
[2026-01-08 07:08:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 07:08:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-01-08 07:08:03] apptainer works
[2026-01-08 07:08:03] Set ATHENA_PROC_NUMBER=4
[2026-01-08 07:08:03] Set ATHENA_CORE_NUMBER=4
[2026-01-08 07:08:03] Starting ATLAS job with PandaID=6962016821
[2026-01-08 07:08:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 10:39:32]  *** The last 200 lines of the pilot log: ***
[2026-01-08 10:39:32] 2026-01-08 09:36:44,897 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6962016821/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,898 | INFO     | extracted standard info from prmon json
[2026-01-08 10:39:32] 2026-01-08 09:36:44,898 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 10:39:32] 2026-01-08 09:36:44,898 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 10:39:32] 2026-01-08 09:36:44,899 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 10:39:32] 2026-01-08 09:36:44,899 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 10:39:32] 2026-01-08 09:36:44,903 | INFO     | fitting pss+swap vs Time
[2026-01-08 10:39:32] 2026-01-08 09:36:44,903 | INFO     | sum of square deviations: 2671343110.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,905 | INFO     | sum of deviations: 17884177823.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,905 | INFO     | mean x: 1767858753.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,905 | INFO     | mean y: 2301705.4048780487
[2026-01-08 10:39:32] 2026-01-08 09:36:44,905 | INFO     | intersect: -11833205379.493338
[2026-01-08 10:39:32] 2026-01-08 09:36:44,906 | INFO     | chi2: 2.0292228674288686
[2026-01-08 10:39:32] 2026-01-08 09:36:44,906 | INFO     | sum of square deviations: 2480604650.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,907 | INFO     | sum of deviations: 29758246130.5
[2026-01-08 10:39:32] 2026-01-08 09:36:44,907 | INFO     | mean x: 1767858600.5
[2026-01-08 10:39:32] 2026-01-08 09:36:44,907 | INFO     | mean y: 2311000.215
[2026-01-08 10:39:32] 2026-01-08 09:36:44,908 | INFO     | intersect: -21205571262.522945
[2026-01-08 10:39:32] 2026-01-08 09:36:44,908 | INFO     | chi2: 1.2635844046723255
[2026-01-08 10:39:32] 2026-01-08 09:36:44,908 | INFO     | current chi2=1.2635844046723255 (change=37.73062461722832 %)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,908 | INFO     | sum of square deviations: 2299168690.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | sum of deviations: 28777454855.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | mean x: 1767858448.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | mean y: 2310176.01025641
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | intersect: -22125020845.25133
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | chi2: 1.2641468734968997
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | current chi2=1.2641468734968997 (change=-0.04451375171254073 %)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,910 | INFO     | right removable region: 194
[2026-01-08 10:39:32] 2026-01-08 09:36:44,911 | INFO     | sum of square deviations: 2480604650.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,912 | INFO     | sum of deviations: -5828858385.499999
[2026-01-08 10:39:32] 2026-01-08 09:36:44,912 | INFO     | mean x: 1767858905.5
[2026-01-08 10:39:32] 2026-01-08 09:36:44,912 | INFO     | mean y: 2320396.335
[2026-01-08 10:39:32] 2026-01-08 09:36:44,912 | INFO     | intersect: 4156387916.003854
[2026-01-08 10:39:32] 2026-01-08 09:36:44,913 | INFO     | chi2: 0.7844880913670386
[2026-01-08 10:39:32] 2026-01-08 09:36:44,913 | INFO     | current chi2=0.7844880913670386 (change=61.340466640757604 %)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,913 | INFO     | sum of square deviations: 2299168690.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,914 | INFO     | sum of deviations: -6558350401.000002
[2026-01-08 10:39:32] 2026-01-08 09:36:44,915 | INFO     | mean x: 1767859058.0
[2026-01-08 10:39:32] 2026-01-08 09:36:44,915 | INFO     | mean y: 2321015.466666667
[2026-01-08 10:39:32] 2026-01-08 09:36:44,915 | INFO     | intersect: 5045117228.01677
[2026-01-08 10:39:32] 2026-01-08 09:36:44,915 | INFO     | chi2: 0.7836969604157568
[2026-01-08 10:39:32] 2026-01-08 09:36:44,915 | INFO     | current chi2=0.7836969604157568 (change=0.100846776386776 %)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,915 | INFO     | left removable region: 20
[2026-01-08 10:39:32] 2026-01-08 09:36:44,916 | INFO     | sum of square deviations: 1633472487.5
[2026-01-08 10:39:32] 2026-01-08 09:36:44,917 | INFO     | sum of deviations: 3718478961.500001
[2026-01-08 10:39:32] 2026-01-08 09:36:44,917 | INFO     | mean x: 1767859027.5
[2026-01-08 10:39:32] 2026-01-08 09:36:44,917 | INFO     | mean y: 2332158.120689655
[2026-01-08 10:39:32] 2026-01-08 09:36:44,917 | INFO     | intersect: -4022067794.1047688
[2026-01-08 10:39:32] 2026-01-08 09:36:44,917 | INFO     | chi2: 0.0002448830509822198
[2026-01-08 10:39:32] 2026-01-08 09:36:44,917 | INFO     | current memory leak: 2.28 B/s (using 174 data points, chi2=0.00)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | could have reported an average CPU frequency of 2689 MHz (10 samples)
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | ..............................
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | . Timing measurements:
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | . get job = 0 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | . initial setup = 1 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | . payload setup = 8 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,918 | INFO     | . stage-in = 0 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,919 | INFO     | . payload execution = 12467 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,919 | INFO     | . stage-out = 1 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,919 | INFO     | . log creation = 0 s
[2026-01-08 10:39:32] 2026-01-08 09:36:44,919 | INFO     | ..............................
[2026-01-08 10:39:32] 2026-01-08 09:36:45,019 | INFO     | 
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | job summary report
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | --------------------------------------------------
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | PanDA job id: 6962016821
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | task id: 47898826
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | errors: (none)
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 10:39:32] 2026-01-08 09:36:45,020 | INFO     | pilot state: finished 
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | transexitcode: 0
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | exeerrorcode: 0
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | exeerrordiag: 
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | exitcode: 0
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | exitmsg: OK
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | cpuconsumptiontime: 48073 s
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | nevents: 400
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | neventsw: 0
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | pid: 1725498
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | pgrp: 1725498
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | corecount: 4
[2026-01-08 10:39:32] 2026-01-08 09:36:45,021 | INFO     | event service: False
[2026-01-08 10:39:32] 2026-01-08 09:36:45,022 | INFO     | sizes: {0: 2283805, 1: 2284004, 7: 2284266, 11: 2284294, 12480: 2314594, 12482: 2323616, 12484: 2323828, 12490: 2324022}
[2026-01-08 10:39:32] 2026-01-08 09:36:45,022 | INFO     | --------------------------------------------------
[2026-01-08 10:39:32] 2026-01-08 09:36:45,022 | INFO     | 
[2026-01-08 10:39:32] 2026-01-08 09:36:45,022 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2026-01-08 10:39:32] 2026-01-08 09:36:45,054 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,055 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,055 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,055 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,055 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,055 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,055 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,056 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | job 6962016821 has completed (purged errors)
[2026-01-08 10:39:32] 2026-01-08 09:36:45,057 | INFO     | overall cleanup function is called
[2026-01-08 10:39:32] 2026-01-08 09:36:46,068 | INFO     | --- collectZombieJob: --- 10, [1725498]
[2026-01-08 10:39:32] 2026-01-08 09:36:46,069 | INFO     | zombie collector waiting for pid 1725498
[2026-01-08 10:39:32] 2026-01-08 09:36:46,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 10:39:32] 2026-01-08 09:36:46,069 | INFO     | collected zombie processes
[2026-01-08 10:39:32] 2026-01-08 09:36:46,069 | INFO     | will attempt to kill all subprocesses of pid=1725498
[2026-01-08 10:39:32] 2026-01-08 09:36:47,225 | INFO     | PID=1717723 has CPU usage=22.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-08 10:39:32] 2026-01-08 09:36:47,226 | INFO     | .. there are 5 such processes running
[2026-01-08 10:39:32] 2026-01-08 09:36:47,566 | INFO     | process IDs to be killed: [1725498] (in reverse order)
[2026-01-08 10:39:32] 2026-01-08 09:36:47,810 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 10:39:32] 2026-01-08 09:36:47,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 10:39:32] 2026-01-08 09:36:47,843 | INFO     | did not find any defunct processes belonging to 1725498
[2026-01-08 10:39:32] 2026-01-08 09:36:47,876 | INFO     | did not find any defunct processes belonging to 1725498
[2026-01-08 10:39:32] 2026-01-08 09:36:47,876 | INFO     | ready for new job
[2026-01-08 10:39:32] 2026-01-08 09:36:47,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 10:39:32] 2026-01-08 09:36:47,879 | INFO     | ***************************************
[2026-01-08 10:39:32] 2026-01-08 09:36:47,879 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 10:39:32] 2026-01-08 09:36:47,879 | INFO     | ***************************************
[2026-01-08 10:39:32] 2026-01-08 09:36:47,879 | INFO     | 
[2026-01-08 10:39:32] 2026-01-08 09:36:47,887 | INFO     | architecture information:
[2026-01-08 10:39:32] 2026-01-08 09:36:47,888 | INFO     | executing command: cat /etc/os-release
[2026-01-08 10:39:32] 2026-01-08 09:36:47,911 | INFO     | cat /etc/os-release:
[2026-01-08 10:39:32] NAME="CentOS Linux"
[2026-01-08 10:39:32] VERSION="7 (Core)"
[2026-01-08 10:39:32] ID="centos"
[2026-01-08 10:39:32] ID_LIKE="rhel fedora"
[2026-01-08 10:39:32] VERSION_ID="7"
[2026-01-08 10:39:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 10:39:32] ANSI_COLOR="0;31"
[2026-01-08 10:39:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 10:39:32] HOME_URL="https://www.centos.org/"
[2026-01-08 10:39:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 10:39:32] 
[2026-01-08 10:39:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 10:39:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 10:39:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 10:39:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 10:39:32] 
[2026-01-08 10:39:32] 2026-01-08 09:36:47,911 | INFO     | ***************************************
[2026-01-08 10:39:32] 2026-01-08 09:36:48,415 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2026-01-08 10:39:32] 2026-01-08 09:36:48,441 | INFO     | sufficient remaining disk space (3328411959296 B)
[2026-01-08 10:39:32] 2026-01-08 09:36:48,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 10:39:32] 2026-01-08 09:36:48,442 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 10:39:32] 2026-01-08 09:36:48,442 | INFO     | update_server=False
[2026-01-08 10:39:32] 2026-01-08 09:36:48,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 10:39:32] 2026-01-08 09:36:48,552 | INFO     | all data control threads have been joined
[2026-01-08 10:39:32] 2026-01-08 09:36:48,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 10:39:32] 2026-01-08 09:36:48,842 | INFO     | aborting loop
[2026-01-08 10:39:32] 2026-01-08 09:36:48,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 10:39:32] 2026-01-08 09:36:49,165 | INFO     | all payload control threads have been joined
[2026-01-08 10:39:32] 2026-01-08 09:36:49,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 10:39:32] 2026-01-08 09:36:49,448 | INFO     | [job] retrieve thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:49,558 | INFO     | [data] control thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:49,852 | INFO     | [job] job monitor thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:49,903 | INFO     | [payload] failed_post thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,013 | INFO     | all job control threads have been joined
[2026-01-08 10:39:32] 2026-01-08 09:36:50,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 10:39:32] 2026-01-08 09:36:50,105 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,122 | INFO     | [job] validate thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,170 | INFO     | [payload] control thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,230 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,272 | INFO     | [payload] validate_post thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,731 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:50,760 | INFO     | [data] copytool_in thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:51,019 | INFO     | [job] control thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:51,034 | INFO     | [job] queue monitor thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:51,385 | INFO     | [data] copytool_out thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:52,908 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:36:59,402 | INFO     | job.realtimelogging is not enabled
[2026-01-08 10:39:32] 2026-01-08 09:37:00,407 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 10:39:32] 2026-01-08 09:37:18,307 | INFO     | 12511s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-08 10:39:32] 2026-01-08 09:37:20,169 | INFO     | PID=1717723 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 10:39:32] 2026-01-08 09:37:20,169 | INFO     | .. there are 5 such processes running
[2026-01-08 10:39:32] 2026-01-08 09:37:20,170 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 10:39:32] 2026-01-08 09:37:20,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 10:39:32] 2026-01-08 09:37:20,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 10:39:32] 2026-01-08 09:37:36,915 | INFO     | [monitor] cgroup control has ended
[2026-01-08 10:39:32] 2026-01-08 09:37:38,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23259239429952)>', '<ExcThread(monitor, started 23259001091840)>']
[2026-01-08 10:39:32] 2026-01-08 09:37:39,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 10:39:32] 2026-01-08 09:37:39,264 | INFO     | [monitor] control thread has ended
[2026-01-08 10:39:32] 2026-01-08 09:37:43,696 | INFO     | all workflow threads have been joined
[2026-01-08 10:39:32] 2026-01-08 09:37:43,696 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 10:39:32] 2026-01-08 09:37:43,696 | INFO     | traces error code: 0
[2026-01-08 10:39:32] 2026-01-08 09:37:43,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 10:39:32] 2026-01-08 09:37:43,941 [wrapper] ==== pilot stdout END ====
[2026-01-08 10:39:32] 2026-01-08 09:37:43,945 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 10:39:32] 2026-01-08 09:37:43,949 [wrapper] pilotpid: 1717723
[2026-01-08 10:39:32] 2026-01-08 09:37:43,954 [wrapper] Pilot exit status: 0
[2026-01-08 10:39:32] 2026-01-08 09:37:43,970 [wrapper] pandaids: 6962016821
[2026-01-08 10:39:32] 2026-01-08 09:37:44,141 [wrapper] cleanup supervisor_pilot 1980024 1717724
[2026-01-08 10:39:32] 2026-01-08 09:37:44,145 [wrapper] Test setup, not cleaning
[2026-01-08 10:39:32] 2026-01-08 09:37:44,149 [wrapper] apfmon messages muted
[2026-01-08 10:39:32] 2026-01-08 09:37:44,154 [wrapper] ==== wrapper stdout END ====
[2026-01-08 10:39:32] 2026-01-08 09:37:44,159 [wrapper] ==== wrapper stderr END ====
[2026-01-08 10:39:32]  *** Error codes and diagnostics ***
[2026-01-08 10:39:32]     "exeErrorCode": 0,
[2026-01-08 10:39:32]     "exeErrorDiag": "",
[2026-01-08 10:39:32]     "pilotErrorCode": 0,
[2026-01-08 10:39:32]     "pilotErrorDiag": "",
[2026-01-08 10:39:32]  *** Listing of results directory ***
[2026-01-08 10:39:32] total 441820
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 10:39:32] -rwx------ 1 boinc boinc     36322 Jan  7 16:33 runpilot2-wrapper.sh
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:36 queuedata.json
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc       100 Jan  8 07:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 10:39:32] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 07:07 run_atlas
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc       105 Jan  8 07:07 job.xml
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc      6691 Jan  8 07:08 init_data.xml
[2026-01-08 10:39:32] -rw-r--r-- 2 boinc boinc 226104952 Jan  8 07:08 EVNT.47898824._000484.pool.root.1
[2026-01-08 10:39:32] -rw-r--r-- 2 boinc boinc     15847 Jan  8 07:08 start_atlas.sh
[2026-01-08 10:39:32] drwxrwx--x 2 boinc boinc      4096 Jan  8 07:08 shared
[2026-01-08 10:39:32] -rw-r--r-- 2 boinc boinc    592397 Jan  8 07:08 input.tar.gz
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc         0 Jan  8 07:08 boinc_lockfile
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc      2516 Jan  8 07:08 pandaJob.out
[2026-01-08 10:39:32] -rw------- 1 boinc boinc    989827 Jan  8 07:08 agis_schedconf.cvmfs.json
[2026-01-08 10:39:32] drwx------ 5 boinc boinc      4096 Jan  8 07:08 pilot3
[2026-01-08 10:39:32] -rw------- 1 boinc boinc 218168220 Jan  8 10:35 HITS.47898826._009515.pool.root.1
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc       529 Jan  8 10:36 boinc_task_state.xml
[2026-01-08 10:39:32] -rw------- 1 boinc boinc      1046 Jan  8 10:36 memory_monitor_summary.json
[2026-01-08 10:39:32] -rw------- 1 boinc boinc   1516240 Jan  8 10:36 agis_ddmendpoints.agis.ALL.json
[2026-01-08 10:39:32] -rw------- 1 boinc boinc    376469 Jan  8 10:36 log.47898826._009515.job.log.tgz.1
[2026-01-08 10:39:32] -rw------- 1 boinc boinc      7787 Jan  8 10:36 heartbeat.json
[2026-01-08 10:39:32] -rw------- 1 boinc boinc        95 Jan  8 10:37 pilot_heartbeat.json
[2026-01-08 10:39:32] -rw------- 1 boinc boinc      5023 Jan  8 10:37 pilotlog.txt
[2026-01-08 10:39:32] -rw------- 1 boinc boinc   1743030 Jan  8 10:37 log.47898826._009515.job.log.1
[2026-01-08 10:39:32] -rw------- 1 boinc boinc       357 Jan  8 10:37 output.list
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc       620 Jan  8 10:37 runtime_log
[2026-01-08 10:39:32] -rw------- 1 boinc boinc   2140160 Jan  8 10:37 result.tar.gz
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc      9223 Jan  8 10:37 runtime_log.err
[2026-01-08 10:39:32] -rw------- 1 boinc boinc       665 Jan  8 10:37 g0JODmuikx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMHdKDmiA2cMo.diag
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc        26 Jan  8 10:39 wrapper_checkpoint.txt
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc      8192 Jan  8 10:39 boinc_mmap_file
[2026-01-08 10:39:32] -rw-r--r-- 1 boinc boinc     20958 Jan  8 10:39 stderr.txt
[2026-01-08 10:39:32] HITS file was successfully produced:
[2026-01-08 10:39:32] -rw------- 1 boinc boinc 218168220 Jan  8 10:35 shared/HITS.pool.root.1
[2026-01-08 10:39:32]  *** Contents of shared directory: ***
[2026-01-08 10:39:32] total 436556
[2026-01-08 10:39:32] -rw-r--r-- 2 boinc boinc 226104952 Jan  8 07:08 ATLAS.root_0
[2026-01-08 10:39:32] -rw-r--r-- 2 boinc boinc     15847 Jan  8 07:08 start_atlas.sh
[2026-01-08 10:39:32] -rw-r--r-- 2 boinc boinc    592397 Jan  8 07:08 input.tar.gz
[2026-01-08 10:39:32] -rw------- 1 boinc boinc 218168220 Jan  8 10:35 HITS.pool.root.1
[2026-01-08 10:39:32] -rw------- 1 boinc boinc   2140160 Jan  8 10:37 result.tar.gz
10:39:33 (1713268): run_atlas exited; CPU time 48900.094058
10:39:33 (1713268): called boinc_finish(0)

</stderr_txt>
]]>

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