Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:14:59 (26349): wrapper (7.7.26015): starting
17:14:59 (26349): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 17:15:00] Arguments: --nthreads 8
[2026-01-07 17:15:00] Threads: 8
[2026-01-07 17:15:00] Checking for CVMFS
[2026-01-07 17:15:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 17:15:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 17:15:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 17:15:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 17:15:08] 2.11.2.0 10325 32761 96160 154874 3 11 14516902 25165824 96 130560 0 14039511 99.842 9301429 4420 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-07 17:15:08] CVMFS is ok
[2026-01-07 17:15:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 17:15:08] Checking for apptainer binary...
[2026-01-07 17:15:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 17:15:08] Running /usr/bin/apptainer --version
[2026-01-07 17:15:08] apptainer version 1.3.2-1.el7
[2026-01-07 17:15:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 17:15:23] cg-vwn405.simple-grid.lan
[2026-01-07 17:15:23] apptainer works
[2026-01-07 17:15:23] Set ATHENA_PROC_NUMBER=8
[2026-01-07 17:15:23] Set ATHENA_CORE_NUMBER=8
[2026-01-07 17:15:23] Starting ATLAS job with PandaID=6962016799
[2026-01-07 17:15:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 23:25:24]  *** The last 200 lines of the pilot log: ***
[2026-01-07 23:25:25] 2026-01-07 22:24:12,209 | INFO     | sum of square deviations: 13068103627.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,213 | INFO     | sum of deviations: 234842863518.5001
[2026-01-07 23:25:25] 2026-01-07 22:24:12,213 | INFO     | mean x: 1767813936.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,213 | INFO     | mean y: 2428369.5603448274
[2026-01-07 23:25:25] 2026-01-07 22:24:12,214 | INFO     | intersect: -31766411154.9299
[2026-01-07 23:25:25] 2026-01-07 22:24:12,214 | INFO     | chi2: 11.36544392819156
[2026-01-07 23:25:25] 2026-01-07 22:24:12,215 | INFO     | sum of square deviations: 12512874612.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,219 | INFO     | sum of deviations: 253758225205.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,219 | INFO     | mean x: 1767813784.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,219 | INFO     | mean y: 2433491.387755102
[2026-01-07 23:25:25] 2026-01-07 22:24:12,219 | INFO     | intersect: -35848424303.55609
[2026-01-07 23:25:25] 2026-01-07 22:24:12,220 | INFO     | chi2: 10.677646186439103
[2026-01-07 23:25:25] 2026-01-07 22:24:12,220 | INFO     | current chi2=10.677646186439103 (change=6.051657516398457 %)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,220 | INFO     | right removable region: 342
[2026-01-07 23:25:25] 2026-01-07 22:24:12,221 | INFO     | sum of square deviations: 12512874612.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,225 | INFO     | sum of deviations: 108410961985.00003
[2026-01-07 23:25:25] 2026-01-07 22:24:12,225 | INFO     | mean x: 1767814089.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,232 | INFO     | mean y: 2463092.7696793005
[2026-01-07 23:25:25] 2026-01-07 22:24:12,233 | INFO     | intersect: -15313795716.004074
[2026-01-07 23:25:25] 2026-01-07 22:24:12,233 | INFO     | chi2: 5.821103583504821
[2026-01-07 23:25:25] 2026-01-07 22:24:12,233 | INFO     | current chi2=5.821103583504821 (change=48.782435421939034 %)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,234 | INFO     | sum of square deviations: 11973599384.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,238 | INFO     | sum of deviations: 2463399783.000004
[2026-01-07 23:25:25] 2026-01-07 22:24:12,238 | INFO     | mean x: 1767814241.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,238 | INFO     | mean y: 2493041.343195266
[2026-01-07 23:25:25] 2026-01-07 22:24:12,238 | INFO     | intersect: -361209892.0063881
[2026-01-07 23:25:25] 2026-01-07 22:24:12,239 | INFO     | chi2: 2.195470550410736
[2026-01-07 23:25:25] 2026-01-07 22:24:12,239 | INFO     | current chi2=2.195470550410736 (change=62.28428993031476 %)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,239 | INFO     | sum of square deviations: 11450045382.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,243 | INFO     | sum of deviations: -53437835795.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,243 | INFO     | mean x: 1767814394.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,243 | INFO     | mean y: 2509264.1411411413
[2026-01-07 23:25:25] 2026-01-07 22:24:12,244 | INFO     | intersect: 8252972223.101789
[2026-01-07 23:25:25] 2026-01-07 22:24:12,244 | INFO     | chi2: 0.9889907628525703
[2026-01-07 23:25:25] 2026-01-07 22:24:12,244 | INFO     | current chi2=0.9889907628525703 (change=54.95313008559616 %)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,245 | INFO     | sum of square deviations: 10941980042.0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,248 | INFO     | sum of deviations: -59701983104.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,249 | INFO     | mean x: 1767814546.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,249 | INFO     | mean y: 2511138.423780488
[2026-01-07 23:25:25] 2026-01-07 22:24:12,249 | INFO     | intersect: 9648117672.334175
[2026-01-07 23:25:25] 2026-01-07 22:24:12,249 | INFO     | chi2: 0.9645650032405331
[2026-01-07 23:25:25] 2026-01-07 22:24:12,250 | INFO     | current chi2=0.9645650032405331 (change=2.4697662030316008 %)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,250 | INFO     | left removable region: 40
[2026-01-07 23:25:25] 2026-01-07 22:24:12,250 | INFO     | sum of square deviations: 8540720135.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,253 | INFO     | sum of deviations: 1158885625.0000002
[2026-01-07 23:25:25] 2026-01-07 22:24:12,253 | INFO     | mean x: 1767814973.5
[2026-01-07 23:25:25] 2026-01-07 22:24:12,253 | INFO     | mean y: 2504658.973509934
[2026-01-07 23:25:25] 2026-01-07 22:24:12,254 | INFO     | intersect: -237369183.97485983
[2026-01-07 23:25:25] 2026-01-07 22:24:12,254 | INFO     | chi2: 0.06122098378936436
[2026-01-07 23:25:25] 2026-01-07 22:24:12,254 | INFO     | current memory leak: 0.14 B/s (using 302 data points, chi2=0.06)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,255 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,255 | INFO     | ..............................
[2026-01-07 23:25:25] 2026-01-07 22:24:12,255 | INFO     | . Timing measurements:
[2026-01-07 23:25:25] 2026-01-07 22:24:12,255 | INFO     | . get job = 0 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,255 | INFO     | . initial setup = 12 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,256 | INFO     | . payload setup = 177 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,256 | INFO     | . stage-in = 0 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,256 | INFO     | . payload execution = 21362 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,256 | INFO     | . stage-out = 4 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,256 | INFO     | . log creation = 1 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,256 | INFO     | ..............................
[2026-01-07 23:25:25] 2026-01-07 22:24:12,409 | INFO     | 
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | job summary report
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | --------------------------------------------------
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | PanDA job id: 6962016799
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | task id: 47898826
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | errors: (none)
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 23:25:25] 2026-01-07 22:24:12,410 | INFO     | pilot state: finished 
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | transexitcode: 0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | exeerrorcode: 0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | exeerrordiag: 
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | exitcode: 0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | exitmsg: OK
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | cpuconsumptiontime: 79080 s
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | nevents: 400
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | neventsw: 0
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | pid: 4436
[2026-01-07 23:25:25] 2026-01-07 22:24:12,411 | INFO     | pgrp: 4436
[2026-01-07 23:25:25] 2026-01-07 22:24:12,412 | INFO     | corecount: 8
[2026-01-07 23:25:25] 2026-01-07 22:24:12,412 | INFO     | event service: False
[2026-01-07 23:25:25] 2026-01-07 22:24:12,412 | INFO     | sizes: {0: 2283793, 1: 2283992, 12: 2283992, 23: 2284020, 33: 2284048, 44: 2284104, 55: 2284260, 65: 2284288, 76: 2284316, 87: 2284372, 98: 2284400, 106: 2284970, 
[2026-01-07 23:25:25] 2026-01-07 22:24:12,412 | INFO     | --------------------------------------------------
[2026-01-07 23:25:25] 2026-01-07 22:24:12,412 | INFO     | 
[2026-01-07 23:25:25] 2026-01-07 22:24:12,412 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-07 23:25:25] 2026-01-07 22:24:12,832 | INFO     | time since job start (21875s) is within the limit (174528.0s)
[2026-01-07 23:25:25] 2026-01-07 22:24:13,040 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,040 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,040 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,040 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | job 6962016799 has completed (purged errors)
[2026-01-07 23:25:25] 2026-01-07 22:24:13,042 | INFO     | overall cleanup function is called
[2026-01-07 23:25:25] 2026-01-07 22:24:14,051 | INFO     | --- collectZombieJob: --- 10, [4436]
[2026-01-07 23:25:25] 2026-01-07 22:24:14,052 | INFO     | zombie collector waiting for pid 4436
[2026-01-07 23:25:25] 2026-01-07 22:24:14,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 23:25:25] 2026-01-07 22:24:14,052 | INFO     | collected zombie processes
[2026-01-07 23:25:25] 2026-01-07 22:24:14,052 | INFO     | will attempt to kill all subprocesses of pid=4436
[2026-01-07 23:25:25] 2026-01-07 22:24:14,124 | INFO     | process IDs to be killed: [4436] (in reverse order)
[2026-01-07 23:25:25] 2026-01-07 22:24:14,991 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 23:25:25] 2026-01-07 22:24:14,991 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 23:25:25] 2026-01-07 22:24:14,993 | INFO     | did not find any defunct processes belonging to 4436
[2026-01-07 23:25:25] 2026-01-07 22:24:14,995 | INFO     | did not find any defunct processes belonging to 4436
[2026-01-07 23:25:25] 2026-01-07 22:24:14,995 | INFO     | ready for new job
[2026-01-07 23:25:25] 2026-01-07 22:24:14,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 23:25:25] 2026-01-07 22:24:14,998 | INFO     | ***************************************
[2026-01-07 23:25:25] 2026-01-07 22:24:14,998 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 23:25:25] 2026-01-07 22:24:14,998 | INFO     | ***************************************
[2026-01-07 23:25:25] 2026-01-07 22:24:14,998 | INFO     | 
[2026-01-07 23:25:25] 2026-01-07 22:24:14,999 | INFO     | pilot is running in a VM
[2026-01-07 23:25:25] 2026-01-07 22:24:14,999 | INFO     | architecture information:
[2026-01-07 23:25:25] 2026-01-07 22:24:15,001 | INFO     | executing command: cat /etc/os-release
[2026-01-07 23:25:25] 2026-01-07 22:24:15,310 | INFO     | cat /etc/os-release:
[2026-01-07 23:25:25] NAME="CentOS Linux"
[2026-01-07 23:25:25] VERSION="7 (Core)"
[2026-01-07 23:25:25] ID="centos"
[2026-01-07 23:25:25] ID_LIKE="rhel fedora"
[2026-01-07 23:25:25] VERSION_ID="7"
[2026-01-07 23:25:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 23:25:25] ANSI_COLOR="0;31"
[2026-01-07 23:25:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 23:25:25] HOME_URL="https://www.centos.org/"
[2026-01-07 23:25:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 23:25:25] 
[2026-01-07 23:25:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 23:25:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 23:25:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 23:25:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 23:25:25] 
[2026-01-07 23:25:25] 2026-01-07 22:24:15,310 | INFO     | ***************************************
[2026-01-07 23:25:25] 2026-01-07 22:24:15,814 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-07 23:25:25] 2026-01-07 22:24:16,059 | INFO     | sufficient remaining disk space (497244176384 B)
[2026-01-07 23:25:25] 2026-01-07 22:24:16,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 23:25:25] 2026-01-07 22:24:16,060 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 23:25:25] 2026-01-07 22:24:16,060 | INFO     | update_server=False
[2026-01-07 23:25:25] 2026-01-07 22:24:16,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 23:25:25] 2026-01-07 22:24:16,063 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 23:25:25] 2026-01-07 22:24:16,194 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-07 23:25:25] 2026-01-07 22:24:16,195 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-07 23:25:25] 2026-01-07 22:24:16,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 23:25:25] 2026-01-07 22:24:16,195 | INFO     | will abort loop
[2026-01-07 23:25:25] 2026-01-07 22:24:16,335 | INFO     | all data control threads have been joined
[2026-01-07 23:25:25] 2026-01-07 22:24:16,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 23:25:25] 2026-01-07 22:24:16,749 | INFO     | all job control threads have been joined
[2026-01-07 23:25:25] 2026-01-07 22:24:17,066 | INFO     | [job] retrieve thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,152 | INFO     | [payload] failed_post thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,194 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,200 | INFO     | [job] job monitor thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,341 | INFO     | [data] control thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,361 | INFO     | all payload control threads have been joined
[2026-01-07 23:25:25] 2026-01-07 22:24:17,410 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 23:25:25] 2026-01-07 22:24:17,555 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,755 | INFO     | [job] control thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:17,792 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:18,070 | INFO     | [data] copytool_out thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:18,226 | INFO     | [job] validate thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:18,367 | INFO     | [payload] control thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:18,410 | INFO     | [data] copytool_in thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:18,432 | INFO     | [job] queue monitor thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:18,485 | INFO     | [payload] validate_post thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:20,667 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 23:25:25] 2026-01-07 22:24:45,963 | INFO     | PID=30380 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-07 23:25:25] 2026-01-07 22:24:45,964 | INFO     | .. there are 2 such processes running
[2026-01-07 23:25:25] 2026-01-07 22:24:45,964 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 23:25:25] 2026-01-07 22:24:45,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 23:25:25] 2026-01-07 22:24:45,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 23:25:25] 2026-01-07 22:25:14,271 | INFO     | [monitor] cgroup control has ended
[2026-01-07 23:25:25] 2026-01-07 22:25:14,758 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042050225984)>', '<ExcThread(monitor, started 140041032562432)>']
[2026-01-07 23:25:25] 2026-01-07 22:25:15,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 23:25:25] 2026-01-07 22:25:15,139 | INFO     | [monitor] control thread has ended
[2026-01-07 23:25:25] 2026-01-07 22:25:19,784 | INFO     | all workflow threads have been joined
[2026-01-07 23:25:25] 2026-01-07 22:25:19,785 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 23:25:25] 2026-01-07 22:25:19,785 | INFO     | traces error code: 0
[2026-01-07 23:25:25] 2026-01-07 22:25:19,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 23:25:25] 2026-01-07 22:25:20,264 [wrapper] ==== pilot stdout END ====
[2026-01-07 23:25:25] 2026-01-07 22:25:20,372 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 23:25:25] 2026-01-07 22:25:20,460 [wrapper] pilotpid: 30380
[2026-01-07 23:25:25] 2026-01-07 22:25:20,529 [wrapper] Pilot exit status: 0
[2026-01-07 23:25:25] 2026-01-07 22:25:20,972 [wrapper] pandaids: 6962016799
[2026-01-07 23:25:25] 2026-01-07 22:25:21,965 [wrapper] cleanup supervisor_pilot  3796 30381
[2026-01-07 23:25:25] 2026-01-07 22:25:22,064 [wrapper] Test setup, not cleaning
[2026-01-07 23:25:25] 2026-01-07 22:25:22,153 [wrapper] apfmon messages muted
[2026-01-07 23:25:25] 2026-01-07 22:25:22,249 [wrapper] ==== wrapper stdout END ====
[2026-01-07 23:25:25] 2026-01-07 22:25:22,319 [wrapper] ==== wrapper stderr END ====
[2026-01-07 23:25:25]  *** Error codes and diagnostics ***
[2026-01-07 23:25:25]     "exeErrorCode": 0,
[2026-01-07 23:25:25]     "exeErrorDiag": "",
[2026-01-07 23:25:25]     "pilotErrorCode": 0,
[2026-01-07 23:25:25]     "pilotErrorDiag": "",
[2026-01-07 23:25:25]  *** Listing of results directory ***
[2026-01-07 23:25:25] total 446684
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-07 23:25:25] -rwx------. 1 boinc boinc     36322 Jan  7 16:33 runpilot2-wrapper.sh
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc      5112 Jan  7 16:36 queuedata.json
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc       100 Jan  7 17:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 23:25:25] -rwxr-xr-x. 1 boinc boinc      7986 Jan  7 17:14 run_atlas
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc       105 Jan  7 17:14 job.xml
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc      6390 Jan  7 17:14 init_data.xml
[2026-01-07 23:25:25] -rw-r--r--. 2 boinc boinc 226057814 Jan  7 17:14 EVNT.47898824._000483.pool.root.1
[2026-01-07 23:25:25] -rw-r--r--. 2 boinc boinc     15847 Jan  7 17:14 start_atlas.sh
[2026-01-07 23:25:25] drwxrwx--x. 2 boinc boinc        68 Jan  7 17:14 shared
[2026-01-07 23:25:25] -rw-r--r--. 2 boinc boinc    592394 Jan  7 17:14 input.tar.gz
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc         0 Jan  7 17:14 boinc_lockfile
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc      2516 Jan  7 17:15 pandaJob.out
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc    989793 Jan  7 17:19 agis_schedconf.cvmfs.json
[2026-01-07 23:25:25] drwx------. 5 boinc boinc      4096 Jan  7 17:19 pilot3
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc 220531903 Jan  7 23:20 HITS.47898826._009493.pool.root.1
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc       531 Jan  7 23:21 boinc_task_state.xml
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc      1014 Jan  7 23:22 memory_monitor_summary.json
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc   1516240 Jan  7 23:22 agis_ddmendpoints.agis.ALL.json
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc    554628 Jan  7 23:22 log.47898826._009493.job.log.tgz.1
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc      7770 Jan  7 23:24 heartbeat.json
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc        95 Jan  7 23:24 pilot_heartbeat.json
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc      8192 Jan  7 23:25 boinc_mmap_file
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc        28 Jan  7 23:25 wrapper_checkpoint.txt
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc      5070 Jan  7 23:25 pilotlog.txt
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc   2902686 Jan  7 23:25 log.47898826._009493.job.log.1
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc       357 Jan  7 23:25 output.list
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc       620 Jan  7 23:25 runtime_log
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc   3481600 Jan  7 23:25 result.tar.gz
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc      8817 Jan  7 23:25 runtime_log.err
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc       657 Jan  7 23:25 9f1NDmuikx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAHdKDmQh7Yfn.diag
[2026-01-07 23:25:25] -rw-r--r--. 1 boinc boinc     20673 Jan  7 23:25 stderr.txt
[2026-01-07 23:25:25] HITS file was successfully produced:
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc 220531903 Jan  7 23:20 shared/HITS.pool.root.1
[2026-01-07 23:25:25]  *** Contents of shared directory: ***
[2026-01-07 23:25:25] total 440120
[2026-01-07 23:25:25] -rw-r--r--. 2 boinc boinc 226057814 Jan  7 17:14 ATLAS.root_0
[2026-01-07 23:25:25] -rw-r--r--. 2 boinc boinc     15847 Jan  7 17:14 start_atlas.sh
[2026-01-07 23:25:25] -rw-r--r--. 2 boinc boinc    592394 Jan  7 17:14 input.tar.gz
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc 220531903 Jan  7 23:20 HITS.pool.root.1
[2026-01-07 23:25:25] -rw-------. 1 boinc boinc   3481600 Jan  7 23:25 result.tar.gz
23:25:26 (26349): run_atlas exited; CPU time 79304.712513
23:25:26 (26349): called boinc_finish(0)

</stderr_txt>
]]>

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