Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:04 (3507012): wrapper (7.7.26015): starting
20:18:04 (3507012): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 20:18:04] Arguments: --nthreads 4
[2026-01-08 20:18:04] Threads: 4
[2026-01-08 20:18:04] Checking for CVMFS
[2026-01-08 20:18:04] No cvmfs_config command found, will try listing directly
[2026-01-08 20:18:04] CVMFS is ok
[2026-01-08 20:18:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 20:18:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 20:18:04] Further information can be found at the LHC@home message board.
[2026-01-08 20:18:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:18:04] Checking for apptainer binary...
[2026-01-08 20:18:04] which: no apptainer in ((null))
[2026-01-08 20:18:04] apptainer is not installed, using version from CVMFS
[2026-01-08 20:18:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:18:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-01-08 20:18:04] apptainer works
[2026-01-08 20:18:05] Set ATHENA_PROC_NUMBER=4
[2026-01-08 20:18:05] Set ATHENA_CORE_NUMBER=4
[2026-01-08 20:18:05] Starting ATLAS job with PandaID=6962016733
[2026-01-08 20:18:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 00:27:41]  *** The last 200 lines of the pilot log: ***
[2026-01-09 00:27:41] 2026-01-08 23:20:44,033 | INFO     | executing command: lscpu
[2026-01-09 00:27:41] 2026-01-08 23:20:44,138 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 00:27:41] 2026-01-08 23:20:45,955 | INFO     | time since job start (14545s) is within the limit (174528.0s)
[2026-01-09 00:27:41] 2026-01-08 23:20:46,534 | INFO     | monitor loop #980: job 0:6962016733 is in state 'finished'
[2026-01-09 00:27:41] 2026-01-08 23:20:46,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 00:27:41] 2026-01-08 23:20:47,960 | INFO     | time since job start (14547s) is within the limit (174528.0s)
[2026-01-09 00:27:41] 2026-01-08 23:20:49,038 | INFO     | monitor loop #981: job 0:6962016733 is in state 'finished'
[2026-01-09 00:27:41] 2026-01-08 23:20:49,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 00:27:41] 2026-01-08 23:20:49,966 | INFO     | time since job start (14549s) is within the limit (174528.0s)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,808 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 00:27:41] 2026-01-08 23:20:50,830 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2539.80996875
[2026-01-09 00:27:41] 2026-01-08 23:20:50,856 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6962016733/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,857 | INFO     | extracted standard info from prmon json
[2026-01-09 00:27:41] 2026-01-08 23:20:50,857 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 00:27:41] 2026-01-08 23:20:50,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 00:27:41] 2026-01-08 23:20:50,858 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 00:27:41] 2026-01-08 23:20:50,858 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 00:27:41] 2026-01-08 23:20:50,863 | INFO     | fitting pss+swap vs Time
[2026-01-09 00:27:41] 2026-01-08 23:20:50,863 | INFO     | sum of square deviations: 4180243959.5
[2026-01-09 00:27:41] 2026-01-08 23:20:50,865 | INFO     | sum of deviations: -50836555058.50001
[2026-01-09 00:27:41] 2026-01-08 23:20:50,865 | INFO     | mean x: 1767907164.5
[2026-01-09 00:27:41] 2026-01-08 23:20:50,865 | INFO     | mean y: 2377953.75210084
[2026-01-09 00:27:41] 2026-01-08 23:20:50,866 | INFO     | intersect: 21502154229.29052
[2026-01-09 00:27:41] 2026-01-08 23:20:50,866 | INFO     | chi2: 1.4506151634421336
[2026-01-09 00:27:41] 2026-01-08 23:20:50,866 | INFO     | sum of square deviations: 3922276332.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,868 | INFO     | sum of deviations: -49576824202.999985
[2026-01-09 00:27:41] 2026-01-08 23:20:50,868 | INFO     | mean x: 1767907012.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,868 | INFO     | mean y: 2378701.1115879826
[2026-01-09 00:27:41] 2026-01-08 23:20:50,868 | INFO     | intersect: 22348385897.520153
[2026-01-09 00:27:41] 2026-01-08 23:20:50,869 | INFO     | chi2: 1.4454092396839733
[2026-01-09 00:27:41] 2026-01-08 23:20:50,869 | INFO     | current chi2=1.4454092396839733 (change=0.3588769709126223 %)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,869 | INFO     | right removable region: 232
[2026-01-09 00:27:41] 2026-01-08 23:20:50,870 | INFO     | sum of square deviations: 3922276332.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,871 | INFO     | sum of deviations: -73769990527.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,872 | INFO     | mean x: 1767907317.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,872 | INFO     | mean y: 2391294.0128755365
[2026-01-09 00:27:41] 2026-01-08 23:20:50,872 | INFO     | intersect: 33253109751.47621
[2026-01-09 00:27:41] 2026-01-08 23:20:50,872 | INFO     | chi2: 0.25955608967178845
[2026-01-09 00:27:41] 2026-01-08 23:20:50,872 | INFO     | current chi2=0.25955608967178845 (change=82.10717106693595 %)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,873 | INFO     | sum of square deviations: 3675146117.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,874 | INFO     | sum of deviations: -64241553023.5
[2026-01-09 00:27:41] 2026-01-08 23:20:50,874 | INFO     | mean x: 1767907469.5
[2026-01-09 00:27:41] 2026-01-08 23:20:50,875 | INFO     | mean y: 2385401.5921052634
[2026-01-09 00:27:41] 2026-01-08 23:20:50,875 | INFO     | intersect: 30905407438.50503
[2026-01-09 00:27:41] 2026-01-08 23:20:50,875 | INFO     | chi2: 0.24076551098756208
[2026-01-09 00:27:41] 2026-01-08 23:20:50,875 | INFO     | current chi2=0.24076551098756208 (change=7.2395059996424145 %)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,875 | INFO     | left removable region: 20
[2026-01-09 00:27:41] 2026-01-08 23:20:50,876 | INFO     | sum of square deviations: 2954447953.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,877 | INFO     | sum of deviations: -39898283664.0
[2026-01-09 00:27:41] 2026-01-08 23:20:50,877 | INFO     | mean x: 1767907591.5
[2026-01-09 00:27:41] 2026-01-08 23:20:50,878 | INFO     | mean y: 2370862.349056604
[2026-01-09 00:27:41] 2026-01-08 23:20:50,878 | INFO     | intersect: 23877043796.012356
[2026-01-09 00:27:41] 2026-01-08 23:20:50,878 | INFO     | chi2: 0.14495691966138813
[2026-01-09 00:27:41] 2026-01-08 23:20:50,878 | INFO     | current memory leak: -13.50 B/s (using 212 data points, chi2=0.14)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | could have reported an average CPU frequency of 2548 MHz (12 samples)
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | ..............................
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . Timing measurements:
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . get job = 0 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . initial setup = 1 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . payload setup = 9 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . stage-in = 0 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . payload execution = 14501 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,879 | INFO     | . stage-out = 8 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,880 | INFO     | . log creation = 0 s
[2026-01-09 00:27:41] 2026-01-08 23:20:50,880 | INFO     | ..............................
[2026-01-09 00:27:41] 2026-01-08 23:20:51,401 | INFO     | 
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | job summary report
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | --------------------------------------------------
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | PanDA job id: 6962016733
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | task id: 47898826
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | errors: (none)
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | pilot state: finished 
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | transexitcode: 0
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | exeerrorcode: 0
[2026-01-09 00:27:41] 2026-01-08 23:20:51,402 | INFO     | exeerrordiag: 
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | exitcode: 0
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | exitmsg: OK
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | cpuconsumptiontime: 55843 s
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | nevents: 400
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | neventsw: 0
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | pid: 3518464
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | pgrp: 3518464
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | corecount: 4
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | event service: False
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | sizes: {0: 2283976, 8: 2284238, 11: 2284266, 14514: 2315514, 14523: 2324536, 14525: 2324786, 14532: 2324938}
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | --------------------------------------------------
[2026-01-09 00:27:41] 2026-01-08 23:20:51,403 | INFO     | 
[2026-01-09 00:27:41] 2026-01-08 23:20:51,404 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2026-01-09 00:27:41] 2026-01-08 23:20:51,441 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 00:27:41] 2026-01-08 23:20:51,444 | INFO     | job 6962016733 has completed (purged errors)
[2026-01-09 00:27:41] 2026-01-08 23:20:51,444 | INFO     | overall cleanup function is called
[2026-01-09 00:27:41] 2026-01-08 23:20:52,452 | INFO     | --- collectZombieJob: --- 10, [3518464]
[2026-01-09 00:27:41] 2026-01-08 23:20:52,453 | INFO     | zombie collector waiting for pid 3518464
[2026-01-09 00:27:41] 2026-01-08 23:20:52,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 00:27:41] 2026-01-08 23:20:52,453 | INFO     | collected zombie processes
[2026-01-09 00:27:41] 2026-01-08 23:20:52,453 | INFO     | will attempt to kill all subprocesses of pid=3518464
[2026-01-09 00:27:41] 2026-01-08 23:20:53,348 | INFO     | process IDs to be killed: [3518464] (in reverse order)
[2026-01-09 00:27:41] 2026-01-08 23:20:53,607 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 00:27:41] 2026-01-08 23:20:53,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 00:27:41] 2026-01-08 23:20:53,643 | INFO     | did not find any defunct processes belonging to 3518464
[2026-01-09 00:27:41] 2026-01-08 23:20:53,679 | INFO     | did not find any defunct processes belonging to 3518464
[2026-01-09 00:27:41] 2026-01-08 23:20:53,680 | INFO     | ready for new job
[2026-01-09 00:27:41] 2026-01-08 23:20:53,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 00:27:41] 2026-01-08 23:20:53,683 | INFO     | ***************************************
[2026-01-09 00:27:41] 2026-01-08 23:20:53,686 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 00:27:41] 2026-01-08 23:20:53,687 | INFO     | ***************************************
[2026-01-09 00:27:41] 2026-01-08 23:20:53,687 | INFO     | 
[2026-01-09 00:27:41] 2026-01-08 23:20:53,695 | INFO     | architecture information:
[2026-01-09 00:27:41] 2026-01-08 23:20:53,696 | INFO     | executing command: cat /etc/os-release
[2026-01-09 00:27:41] 2026-01-08 23:20:53,723 | INFO     | cat /etc/os-release:
[2026-01-09 00:27:41] NAME="CentOS Linux"
[2026-01-09 00:27:41] VERSION="7 (Core)"
[2026-01-09 00:27:41] ID="centos"
[2026-01-09 00:27:41] ID_LIKE="rhel fedora"
[2026-01-09 00:27:41] VERSION_ID="7"
[2026-01-09 00:27:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 00:27:41] ANSI_COLOR="0;31"
[2026-01-09 00:27:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 00:27:41] HOME_URL="https://www.centos.org/"
[2026-01-09 00:27:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 00:27:41] 
[2026-01-09 00:27:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 00:27:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 00:27:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 00:27:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 00:27:41] 
[2026-01-09 00:27:41] 2026-01-08 23:20:53,724 | INFO     | ***************************************
[2026-01-09 00:27:41] 2026-01-08 23:20:54,227 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2026-01-09 00:27:41] 2026-01-08 23:20:54,259 | INFO     | sufficient remaining disk space (3332174249984 B)
[2026-01-09 00:27:41] 2026-01-08 23:20:54,259 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 00:27:41] 2026-01-08 23:20:54,259 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 00:27:41] 2026-01-08 23:20:54,259 | INFO     | update_server=False
[2026-01-09 00:27:41] 2026-01-08 23:20:54,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 00:27:41] 2026-01-08 23:20:54,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 00:27:41] 2026-01-08 23:20:54,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 00:27:41] 2026-01-08 23:20:54,752 | INFO     | all payload control threads have been joined
[2026-01-09 00:27:41] 2026-01-08 23:20:54,896 | INFO     | all data control threads have been joined
[2026-01-09 00:27:41] 2026-01-08 23:20:55,053 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:27:41] 2026-01-08 23:20:55,054 | INFO     | aborting loop
[2026-01-09 00:27:41] 2026-01-08 23:20:55,265 | INFO     | [job] retrieve thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:55,545 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:55,678 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:55,713 | INFO     | all job control threads have been joined
[2026-01-09 00:27:41] 2026-01-08 23:20:55,757 | INFO     | [payload] control thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:55,863 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:55,902 | INFO     | [data] control thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:55,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:27:41] 2026-01-08 23:20:56,058 | INFO     | [job] job monitor thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,143 | INFO     | [data] copytool_in thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,370 | INFO     | [payload] validate_post thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,375 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,513 | INFO     | [data] copytool_out thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,718 | INFO     | [job] control thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,751 | INFO     | [job] validate thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,782 | INFO     | [payload] failed_post thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:56,996 | INFO     | [job] queue monitor thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:20:58,548 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 00:27:41] 2026-01-08 23:21:24,144 | INFO     | PID=3511032 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 00:27:41] 2026-01-08 23:21:24,144 | INFO     | .. there are 7 such processes running
[2026-01-09 00:27:41] 2026-01-08 23:21:24,144 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 00:27:41] 2026-01-08 23:21:24,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 00:27:41] 2026-01-08 23:21:24,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 00:27:41] 2026-01-08 23:21:43,794 | INFO     | [monitor] cgroup control has ended
[2026-01-09 00:27:41] 2026-01-08 23:21:45,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22951519590208)>', '<ExcThread(monitor, started 22951283889920)>']
[2026-01-09 00:27:41] 2026-01-08 23:21:45,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 00:27:41] 2026-01-08 23:21:45,252 | INFO     | [monitor] control thread has ended
[2026-01-09 00:27:41] 2026-01-08 23:21:50,188 | INFO     | all workflow threads have been joined
[2026-01-09 00:27:41] 2026-01-08 23:21:50,188 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 00:27:41] 2026-01-08 23:21:50,188 | INFO     | traces error code: 0
[2026-01-09 00:27:41] 2026-01-08 23:21:50,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 00:27:41] 2026-01-08 23:21:50,363 [wrapper] ==== pilot stdout END ====
[2026-01-09 00:27:41] 2026-01-08 23:21:50,368 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 00:27:41] 2026-01-08 23:21:50,376 [wrapper] pilotpid: 3511032
[2026-01-09 00:27:41] 2026-01-08 23:21:50,380 [wrapper] Pilot exit status: 0
[2026-01-09 00:27:41] 2026-01-08 23:21:50,395 [wrapper] pandaids: 6962016733
[2026-01-09 00:27:41] 2026-01-08 23:21:50,590 [wrapper] cleanup supervisor_pilot 3905639 3511033
[2026-01-09 00:27:41] 2026-01-08 23:21:50,595 [wrapper] Test setup, not cleaning
[2026-01-09 00:27:41] 2026-01-08 23:21:50,599 [wrapper] apfmon messages muted
[2026-01-09 00:27:41] 2026-01-08 23:21:50,605 [wrapper] ==== wrapper stdout END ====
[2026-01-09 00:27:41] 2026-01-08 23:21:50,609 [wrapper] ==== wrapper stderr END ====
[2026-01-09 00:27:41]  *** Error codes and diagnostics ***
[2026-01-09 00:27:41]     "exeErrorCode": 0,
[2026-01-09 00:27:41]     "exeErrorDiag": "",
[2026-01-09 00:27:41]     "pilotErrorCode": 0,
[2026-01-09 00:27:41]     "pilotErrorDiag": "",
[2026-01-09 00:27:41]  *** Listing of results directory ***
[2026-01-09 00:27:41] total 437108
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-09 00:27:41] -rwx------ 1 boinc boinc     36322 Jan  7 16:33 runpilot2-wrapper.sh
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:35 queuedata.json
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc       100 Jan  8 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 00:27:41] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 20:17 run_atlas
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc       105 Jan  8 20:17 job.xml
[2026-01-09 00:27:41] -rw-r--r-- 2 boinc boinc 225353617 Jan  8 20:18 EVNT.47898824._000480.pool.root.1
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc      6690 Jan  8 20:18 init_data.xml
[2026-01-09 00:27:41] -rw-r--r-- 2 boinc boinc     15847 Jan  8 20:18 start_atlas.sh
[2026-01-09 00:27:41] drwxrwx--x 2 boinc boinc      4096 Jan  8 20:18 shared
[2026-01-09 00:27:41] -rw-r--r-- 2 boinc boinc    592392 Jan  8 20:18 input.tar.gz
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc         0 Jan  8 20:18 boinc_lockfile
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc      2516 Jan  8 20:18 pandaJob.out
[2026-01-09 00:27:41] -rw------- 1 boinc boinc    989845 Jan  8 20:18 agis_schedconf.cvmfs.json
[2026-01-09 00:27:41] drwx------ 5 boinc boinc      4096 Jan  8 20:18 pilot3
[2026-01-09 00:27:41] -rw------- 1 boinc boinc 213499238 Jan  9 00:19 HITS.47898826._009427.pool.root.1
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc       529 Jan  9 00:20 boinc_task_state.xml
[2026-01-09 00:27:41] -rw------- 1 boinc boinc      1030 Jan  9 00:20 memory_monitor_summary.json
[2026-01-09 00:27:41] -rw------- 1 boinc boinc   1516240 Jan  9 00:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 00:27:41] -rw------- 1 boinc boinc    415400 Jan  9 00:20 log.47898826._009427.job.log.tgz.1
[2026-01-09 00:27:41] -rw------- 1 boinc boinc        95 Jan  9 00:20 pilot_heartbeat.json
[2026-01-09 00:27:41] -rw------- 1 boinc boinc      7792 Jan  9 00:20 heartbeat.json
[2026-01-09 00:27:41] -rw------- 1 boinc boinc      4836 Jan  9 00:21 pilotlog.txt
[2026-01-09 00:27:41] -rw------- 1 boinc boinc   2002427 Jan  9 00:21 log.47898826._009427.job.log.1
[2026-01-09 00:27:41] -rw------- 1 boinc boinc       357 Jan  9 00:21 output.list
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc       620 Jan  9 00:21 runtime_log
[2026-01-09 00:27:41] -rw------- 1 boinc boinc   2437120 Jan  9 00:21 result.tar.gz
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc      9223 Jan  9 00:21 runtime_log.err
[2026-01-09 00:27:41] -rw------- 1 boinc boinc       667 Jan  9 00:21 D1ILDmaikx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTDdKDmmYci8n.diag
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc        27 Jan  9 00:27 wrapper_checkpoint.txt
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc      8192 Jan  9 00:27 boinc_mmap_file
[2026-01-09 00:27:41] -rw-r--r-- 1 boinc boinc     21172 Jan  9 00:27 stderr.txt
[2026-01-09 00:27:41] HITS file was successfully produced:
[2026-01-09 00:27:41] -rw------- 1 boinc boinc 213499238 Jan  9 00:19 shared/HITS.pool.root.1
[2026-01-09 00:27:41]  *** Contents of shared directory: ***
[2026-01-09 00:27:41] total 431552
[2026-01-09 00:27:41] -rw-r--r-- 2 boinc boinc 225353617 Jan  8 20:18 ATLAS.root_0
[2026-01-09 00:27:41] -rw-r--r-- 2 boinc boinc     15847 Jan  8 20:18 start_atlas.sh
[2026-01-09 00:27:41] -rw-r--r-- 2 boinc boinc    592392 Jan  8 20:18 input.tar.gz
[2026-01-09 00:27:41] -rw------- 1 boinc boinc 213499238 Jan  9 00:19 HITS.pool.root.1
[2026-01-09 00:27:41] -rw------- 1 boinc boinc   2437120 Jan  9 00:21 result.tar.gz
00:27:42 (3507012): run_atlas exited; CPU time 56944.761315
00:27:42 (3507012): called boinc_finish(0)

</stderr_txt>
]]>

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