Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:44:55 (24966): wrapper (7.7.26015): starting
16:44:55 (24966): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 16:44:55] Arguments: --nthreads 8
[2026-01-07 16:44:55] Threads: 8
[2026-01-07 16:44:55] Checking for CVMFS
[2026-01-07 16:44:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 16:45:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 16:45:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 16:45:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 16:45:01] 2.11.2.0 24551 32731 118568 154872 2 11 23541152 25165824 96 130560 0 14344067 99.816 10480970 3814 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-07 16:45:01] CVMFS is ok
[2026-01-07 16:45:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 16:45:01] Checking for apptainer binary...
[2026-01-07 16:45:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 16:45:01] Running /usr/bin/apptainer --version
[2026-01-07 16:45:02] apptainer version 1.3.2-1.el7
[2026-01-07 16:45:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 16:46:36] cg-vwn415.simple-grid.lan
[2026-01-07 16:46:36] apptainer works
[2026-01-07 16:46:36] Set ATHENA_PROC_NUMBER=8
[2026-01-07 16:46:36] Set ATHENA_CORE_NUMBER=8
[2026-01-07 16:46:36] Starting ATLAS job with PandaID=6962013625
[2026-01-07 16:46:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 22:44:20]  *** The last 200 lines of the pilot log: ***
[2026-01-07 22:44:20] 2026-01-07 21:43:10,085 | INFO     | sum of deviations: 198127977918.00003
[2026-01-07 22:44:20] 2026-01-07 21:43:10,085 | INFO     | mean x: 1767811889.5
[2026-01-07 22:44:20] 2026-01-07 21:43:10,085 | INFO     | mean y: 2439437.6826347304
[2026-01-07 22:44:20] 2026-01-07 21:43:10,086 | INFO     | intersect: -30313283290.070763
[2026-01-07 22:44:20] 2026-01-07 21:43:10,086 | INFO     | chi2: 10.528235248150072
[2026-01-07 22:44:20] 2026-01-07 21:43:10,087 | INFO     | sum of square deviations: 11042365180.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,091 | INFO     | sum of deviations: 216789368026.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,091 | INFO     | mean x: 1767811737.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,091 | INFO     | mean y: 2444925.4863221883
[2026-01-07 22:44:20] 2026-01-07 21:43:10,091 | INFO     | intersect: -34704140394.4148
[2026-01-07 22:44:20] 2026-01-07 21:43:10,092 | INFO     | chi2: 9.835876883806518
[2026-01-07 22:44:20] 2026-01-07 21:43:10,092 | INFO     | current chi2=9.835876883806518 (change=6.576205299603352 %)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,092 | INFO     | right removable region: 328
[2026-01-07 22:44:20] 2026-01-07 21:43:10,098 | INFO     | sum of square deviations: 11042365180.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,101 | INFO     | sum of deviations: 77749275751.00002
[2026-01-07 22:44:20] 2026-01-07 21:43:10,102 | INFO     | mean x: 1767812042.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,102 | INFO     | mean y: 2475344.2066869303
[2026-01-07 22:44:20] 2026-01-07 21:43:10,102 | INFO     | intersect: -12444686444.858183
[2026-01-07 22:44:20] 2026-01-07 21:43:10,102 | INFO     | chi2: 5.152567466203408
[2026-01-07 22:44:20] 2026-01-07 21:43:10,103 | INFO     | current chi2=5.152567466203408 (change=51.05953329539468 %)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,103 | INFO     | sum of square deviations: 10546523325.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,107 | INFO     | sum of deviations: -18195682039.499985
[2026-01-07 22:44:20] 2026-01-07 21:43:10,107 | INFO     | mean x: 1767812194.5
[2026-01-07 22:44:20] 2026-01-07 21:43:10,107 | INFO     | mean y: 2504832.0833333335
[2026-01-07 22:44:20] 2026-01-07 21:43:10,107 | INFO     | intersect: 3052471878.609797
[2026-01-07 22:44:20] 2026-01-07 21:43:10,108 | INFO     | chi2: 1.941247893776453
[2026-01-07 22:44:20] 2026-01-07 21:43:10,108 | INFO     | current chi2=1.941247893776453 (change=62.32464870165334 %)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,108 | INFO     | sum of square deviations: 10065751520.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,112 | INFO     | sum of deviations: -66095905290.99999
[2026-01-07 22:44:20] 2026-01-07 21:43:10,112 | INFO     | mean x: 1767812347.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,112 | INFO     | mean y: 2519953.642633229
[2026-01-07 22:44:20] 2026-01-07 21:43:10,112 | INFO     | intersect: 11610710085.04103
[2026-01-07 22:44:20] 2026-01-07 21:43:10,113 | INFO     | chi2: 0.8974677147328711
[2026-01-07 22:44:20] 2026-01-07 21:43:10,113 | INFO     | current chi2=0.8974677147328711 (change=53.768515725883894 %)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,114 | INFO     | sum of square deviations: 9599817202.5
[2026-01-07 22:44:20] 2026-01-07 21:43:10,123 | INFO     | sum of deviations: -69095521853.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,123 | INFO     | mean x: 1767812499.5
[2026-01-07 22:44:20] 2026-01-07 21:43:10,123 | INFO     | mean y: 2520917.388535032
[2026-01-07 22:44:20] 2026-01-07 21:43:10,123 | INFO     | intersect: 12726505615.701212
[2026-01-07 22:44:20] 2026-01-07 21:43:10,124 | INFO     | chi2: 0.8717860587577477
[2026-01-07 22:44:20] 2026-01-07 21:43:10,124 | INFO     | current chi2=0.8717860587577477 (change=2.861568784428916 %)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,124 | INFO     | left removable region: 40
[2026-01-07 22:44:20] 2026-01-07 21:43:10,125 | INFO     | sum of square deviations: 7407141672.0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,128 | INFO     | sum of deviations: -29460499701.5
[2026-01-07 22:44:20] 2026-01-07 21:43:10,128 | INFO     | mean x: 1767812926.5
[2026-01-07 22:44:20] 2026-01-07 21:43:10,128 | INFO     | mean y: 2521409.440972222
[2026-01-07 22:44:20] 2026-01-07 21:43:10,128 | INFO     | intersect: 7033661692.653459
[2026-01-07 22:44:20] 2026-01-07 21:43:10,129 | INFO     | chi2: 0.0808824072273768
[2026-01-07 22:44:20] 2026-01-07 21:43:10,129 | INFO     | current memory leak: -3.98 B/s (using 288 data points, chi2=0.08)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,130 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,130 | INFO     | ..............................
[2026-01-07 22:44:20] 2026-01-07 21:43:10,130 | INFO     | . Timing measurements:
[2026-01-07 22:44:20] 2026-01-07 21:43:10,130 | INFO     | . get job = 0 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,130 | INFO     | . initial setup = 12 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,130 | INFO     | . payload setup = 181 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,131 | INFO     | . stage-in = 0 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,131 | INFO     | . payload execution = 20514 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,131 | INFO     | . stage-out = 3 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,131 | INFO     | . log creation = 1 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,131 | INFO     | ..............................
[2026-01-07 22:44:20] 2026-01-07 21:43:10,151 | INFO     | time since job start (21036s) is within the limit (174528.0s)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,307 | INFO     | 
[2026-01-07 22:44:20] 2026-01-07 21:43:10,307 | INFO     | job summary report
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | --------------------------------------------------
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | PanDA job id: 6962013625
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | task id: 47898826
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | errors: (none)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | pilot state: finished 
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | transexitcode: 0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | exeerrorcode: 0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,308 | INFO     | exeerrordiag: 
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | exitcode: 0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | exitmsg: OK
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | cpuconsumptiontime: 76577 s
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | nevents: 400
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | neventsw: 0
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | pid: 3063
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | pgrp: 3063
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | corecount: 8
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | event service: False
[2026-01-07 22:44:20] 2026-01-07 21:43:10,309 | INFO     | sizes: {0: 2283136, 1: 2283821, 2: 2284020, 3: 2284020, 13: 2284048, 24: 2284104, 35: 2284260, 46: 2284288, 56: 2284316, 67: 2284344, 78: 2284372, 89: 2284708, 99:
[2026-01-07 22:44:20] 2026-01-07 21:43:10,310 | INFO     | --------------------------------------------------
[2026-01-07 22:44:20] 2026-01-07 21:43:10,310 | INFO     | 
[2026-01-07 22:44:20] 2026-01-07 21:43:10,310 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-07 22:44:20] 2026-01-07 21:43:10,912 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,912 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,912 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,913 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,914 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 22:44:20] 2026-01-07 21:43:10,915 | INFO     | job 6962013625 has completed (purged errors)
[2026-01-07 22:44:20] 2026-01-07 21:43:10,915 | INFO     | overall cleanup function is called
[2026-01-07 22:44:20] 2026-01-07 21:43:11,923 | INFO     | --- collectZombieJob: --- 10, [3063]
[2026-01-07 22:44:20] 2026-01-07 21:43:11,924 | INFO     | zombie collector waiting for pid 3063
[2026-01-07 22:44:20] 2026-01-07 21:43:11,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 22:44:20] 2026-01-07 21:43:11,924 | INFO     | collected zombie processes
[2026-01-07 22:44:20] 2026-01-07 21:43:11,924 | INFO     | will attempt to kill all subprocesses of pid=3063
[2026-01-07 22:44:20] 2026-01-07 21:43:12,016 | INFO     | process IDs to be killed: [3063] (in reverse order)
[2026-01-07 22:44:20] 2026-01-07 21:43:12,762 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 22:44:20] 2026-01-07 21:43:12,763 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 22:44:20] 2026-01-07 21:43:12,765 | INFO     | did not find any defunct processes belonging to 3063
[2026-01-07 22:44:20] 2026-01-07 21:43:12,766 | INFO     | did not find any defunct processes belonging to 3063
[2026-01-07 22:44:20] 2026-01-07 21:43:12,767 | INFO     | ready for new job
[2026-01-07 22:44:20] 2026-01-07 21:43:12,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 22:44:20] 2026-01-07 21:43:12,774 | INFO     | ***************************************
[2026-01-07 22:44:20] 2026-01-07 21:43:12,774 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 22:44:20] 2026-01-07 21:43:12,775 | INFO     | ***************************************
[2026-01-07 22:44:20] 2026-01-07 21:43:12,775 | INFO     | 
[2026-01-07 22:44:20] 2026-01-07 21:43:12,775 | INFO     | pilot is running in a VM
[2026-01-07 22:44:20] 2026-01-07 21:43:12,775 | INFO     | architecture information:
[2026-01-07 22:44:20] 2026-01-07 21:43:12,810 | INFO     | executing command: cat /etc/os-release
[2026-01-07 22:44:20] 2026-01-07 21:43:13,038 | INFO     | cat /etc/os-release:
[2026-01-07 22:44:20] NAME="CentOS Linux"
[2026-01-07 22:44:20] VERSION="7 (Core)"
[2026-01-07 22:44:20] ID="centos"
[2026-01-07 22:44:20] ID_LIKE="rhel fedora"
[2026-01-07 22:44:20] VERSION_ID="7"
[2026-01-07 22:44:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 22:44:20] ANSI_COLOR="0;31"
[2026-01-07 22:44:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 22:44:20] HOME_URL="https://www.centos.org/"
[2026-01-07 22:44:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 22:44:20] 
[2026-01-07 22:44:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 22:44:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 22:44:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 22:44:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 22:44:20] 
[2026-01-07 22:44:20] 2026-01-07 21:43:13,039 | INFO     | ***************************************
[2026-01-07 22:44:20] 2026-01-07 21:43:13,542 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-07 22:44:20] 2026-01-07 21:43:13,830 | INFO     | sufficient remaining disk space (497029218304 B)
[2026-01-07 22:44:20] 2026-01-07 21:43:13,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 22:44:20] 2026-01-07 21:43:13,831 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 22:44:20] 2026-01-07 21:43:13,831 | INFO     | update_server=False
[2026-01-07 22:44:20] 2026-01-07 21:43:13,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 22:44:20] 2026-01-07 21:43:13,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 22:44:20] 2026-01-07 21:43:14,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 22:44:20] 2026-01-07 21:43:14,203 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-07 22:44:20] 2026-01-07 21:43:14,204 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-07 22:44:20] 2026-01-07 21:43:14,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 22:44:20] 2026-01-07 21:43:14,204 | INFO     | will abort loop
[2026-01-07 22:44:20] 2026-01-07 21:43:14,616 | INFO     | all data control threads have been joined
[2026-01-07 22:44:20] 2026-01-07 21:43:14,838 | INFO     | [job] retrieve thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,112 | INFO     | all payload control threads have been joined
[2026-01-07 22:44:20] 2026-01-07 21:43:15,167 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,173 | INFO     | all job control threads have been joined
[2026-01-07 22:44:20] 2026-01-07 21:43:15,210 | INFO     | [job] job monitor thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,251 | INFO     | [data] copytool_in thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 22:44:20] 2026-01-07 21:43:15,382 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,406 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,470 | INFO     | [payload] failed_post thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,623 | INFO     | [data] control thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,798 | INFO     | [payload] validate_post thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,816 | INFO     | [job] validate thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:15,839 | INFO     | [data] copytool_out thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:16,119 | INFO     | [payload] control thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:16,180 | INFO     | [job] control thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:16,331 | INFO     | [job] queue monitor thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:18,057 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:24,410 | INFO     | job.realtimelogging is not enabled
[2026-01-07 22:44:20] 2026-01-07 21:43:25,416 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 22:44:20] 2026-01-07 21:43:43,282 | INFO     | PID=29006 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-07 22:44:20] 2026-01-07 21:43:43,282 | INFO     | .. there are 2 such processes running
[2026-01-07 22:44:20] 2026-01-07 21:43:43,282 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 22:44:20] 2026-01-07 21:43:43,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 22:44:20] 2026-01-07 21:43:43,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 22:44:20] 2026-01-07 21:44:09,690 | INFO     | [monitor] cgroup control has ended
[2026-01-07 22:44:20] 2026-01-07 21:44:10,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622618638144)>', '<ExcThread(monitor, started 139622021568256)>']
[2026-01-07 22:44:20] 2026-01-07 21:44:11,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 22:44:20] 2026-01-07 21:44:11,449 | INFO     | [monitor] control thread has ended
[2026-01-07 22:44:20] 2026-01-07 21:44:15,898 | INFO     | all workflow threads have been joined
[2026-01-07 22:44:20] 2026-01-07 21:44:15,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 22:44:20] 2026-01-07 21:44:15,899 | INFO     | traces error code: 0
[2026-01-07 22:44:20] 2026-01-07 21:44:15,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 22:44:20] 2026-01-07 21:44:16,303 [wrapper] ==== pilot stdout END ====
[2026-01-07 22:44:20] 2026-01-07 21:44:16,363 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 22:44:20] 2026-01-07 21:44:16,453 [wrapper] pilotpid: 29006
[2026-01-07 22:44:20] 2026-01-07 21:44:16,547 [wrapper] Pilot exit status: 0
[2026-01-07 22:44:20] 2026-01-07 21:44:17,014 [wrapper] pandaids: 6962013625
[2026-01-07 22:44:20] 2026-01-07 21:44:18,113 [wrapper] cleanup supervisor_pilot  2337 29007
[2026-01-07 22:44:20] 2026-01-07 21:44:18,243 [wrapper] Test setup, not cleaning
[2026-01-07 22:44:20] 2026-01-07 21:44:18,344 [wrapper] apfmon messages muted
[2026-01-07 22:44:20] 2026-01-07 21:44:18,438 [wrapper] ==== wrapper stdout END ====
[2026-01-07 22:44:20] 2026-01-07 21:44:18,498 [wrapper] ==== wrapper stderr END ====
[2026-01-07 22:44:20]  *** Error codes and diagnostics ***
[2026-01-07 22:44:20]     "exeErrorCode": 0,
[2026-01-07 22:44:20]     "exeErrorDiag": "",
[2026-01-07 22:44:20]     "pilotErrorCode": 0,
[2026-01-07 22:44:20]     "pilotErrorDiag": "",
[2026-01-07 22:44:20]  *** Listing of results directory ***
[2026-01-07 22:44:20] total 436324
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-07 22:44:20] -rwx------. 1 boinc boinc     36322 Jan  7 16:31 runpilot2-wrapper.sh
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc      5112 Jan  7 16:31 queuedata.json
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc       100 Jan  7 16:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 22:44:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan  7 16:44 run_atlas
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc       105 Jan  7 16:44 job.xml
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc      6390 Jan  7 16:44 init_data.xml
[2026-01-07 22:44:20] -rw-r--r--. 2 boinc boinc 223106656 Jan  7 16:44 EVNT.47898824._000354.pool.root.1
[2026-01-07 22:44:20] -rw-r--r--. 2 boinc boinc     15847 Jan  7 16:44 start_atlas.sh
[2026-01-07 22:44:20] drwxrwx--x. 2 boinc boinc        68 Jan  7 16:44 shared
[2026-01-07 22:44:20] -rw-r--r--. 2 boinc boinc    592392 Jan  7 16:44 input.tar.gz
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc         0 Jan  7 16:44 boinc_lockfile
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc      2516 Jan  7 16:46 pandaJob.out
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc    989408 Jan  7 16:52 agis_schedconf.cvmfs.json
[2026-01-07 22:44:20] drwx------. 5 boinc boinc      4096 Jan  7 16:52 pilot3
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc 213107900 Jan  7 22:39 HITS.47898826._008425.pool.root.1
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc       531 Jan  7 22:39 boinc_task_state.xml
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc      1016 Jan  7 22:41 memory_monitor_summary.json
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc   1516240 Jan  7 22:41 agis_ddmendpoints.agis.ALL.json
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc    550119 Jan  7 22:41 log.47898826._008425.job.log.tgz.1
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc        95 Jan  7 22:42 pilot_heartbeat.json
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc      7781 Jan  7 22:43 heartbeat.json
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc      8192 Jan  7 22:43 boinc_mmap_file
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc        28 Jan  7 22:43 wrapper_checkpoint.txt
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc      5142 Jan  7 22:44 pilotlog.txt
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc   2789370 Jan  7 22:44 log.47898826._008425.job.log.1
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc       357 Jan  7 22:44 output.list
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc       620 Jan  7 22:44 runtime_log
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc   3358720 Jan  7 22:44 result.tar.gz
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc       657 Jan  7 22:44 YliLDmUgkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVDiKDmTa1gjn.diag
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc      8817 Jan  7 22:44 runtime_log.err
[2026-01-07 22:44:20] -rw-r--r--. 1 boinc boinc     20669 Jan  7 22:44 stderr.txt
[2026-01-07 22:44:20] HITS file was successfully produced:
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc 213107900 Jan  7 22:39 shared/HITS.pool.root.1
[2026-01-07 22:44:20]  *** Contents of shared directory: ***
[2026-01-07 22:44:20] total 429872
[2026-01-07 22:44:20] -rw-r--r--. 2 boinc boinc 223106656 Jan  7 16:44 ATLAS.root_0
[2026-01-07 22:44:20] -rw-r--r--. 2 boinc boinc     15847 Jan  7 16:44 start_atlas.sh
[2026-01-07 22:44:20] -rw-r--r--. 2 boinc boinc    592392 Jan  7 16:44 input.tar.gz
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc 213107900 Jan  7 22:39 HITS.pool.root.1
[2026-01-07 22:44:20] -rw-------. 1 boinc boinc   3358720 Jan  7 22:44 result.tar.gz
22:44:22 (24966): run_atlas exited; CPU time 76795.433840
22:44:22 (24966): called boinc_finish(0)

</stderr_txt>
]]>

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