Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:31:59 (3642739): wrapper (7.7.26015): starting
15:31:59 (3642739): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 15:31:59] Arguments: --nthreads 4
[2026-01-08 15:31:59] Threads: 4
[2026-01-08 15:31:59] Checking for CVMFS
[2026-01-08 15:31:59] No cvmfs_config command found, will try listing directly
[2026-01-08 15:31:59] CVMFS is ok
[2026-01-08 15:31:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 15:31:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 15:31:59] Further information can be found at the LHC@home message board.
[2026-01-08 15:31:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 15:31:59] Checking for apptainer binary...
[2026-01-08 15:31:59] which: no apptainer in ((null))
[2026-01-08 15:31:59] apptainer is not installed, using version from CVMFS
[2026-01-08 15:31:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 15:32:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-01-08 15:32:00] apptainer works
[2026-01-08 15:32:00] Set ATHENA_PROC_NUMBER=4
[2026-01-08 15:32:00] Set ATHENA_CORE_NUMBER=4
[2026-01-08 15:32:00] Starting ATLAS job with PandaID=6962015697
[2026-01-08 15:32:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:18:37 (3776015): wrapper (7.7.26015): starting
17:18:37 (3776015): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 17:18:37] Arguments: --nthreads 4
[2026-01-08 17:18:37] Threads: 4
[2026-01-08 17:18:37] This job has been restarted, cleaning up previous attempt
[2026-01-08 17:18:37] Checking for CVMFS
[2026-01-08 17:18:37] No cvmfs_config command found, will try listing directly
[2026-01-08 17:18:37] CVMFS is ok
[2026-01-08 17:18:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 17:18:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 17:18:37] Further information can be found at the LHC@home message board.
[2026-01-08 17:18:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:18:37] Checking for apptainer binary...
[2026-01-08 17:18:37] which: no apptainer in ((null))
[2026-01-08 17:18:37] apptainer is not installed, using version from CVMFS
[2026-01-08 17:18:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:18:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-01-08 17:18:37] apptainer works
[2026-01-08 17:18:37] Set ATHENA_PROC_NUMBER=4
[2026-01-08 17:18:37] Set ATHENA_CORE_NUMBER=4
[2026-01-08 17:18:37] Starting ATLAS job with PandaID=6962015697
[2026-01-08 17:18:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:16:22]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:16:22] 2026-01-08 20:15:24,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 21:16:22] 2026-01-08 20:15:25,684 | INFO     | PID=3780096 has CPU usage=24.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-08 21:16:22] 2026-01-08 20:15:25,684 | INFO     | .. there are 7 such processes running
[2026-01-08 21:16:22] 2026-01-08 20:15:26,545 | INFO     | monitor loop #962: job 0:6962015697 is in state 'finished'
[2026-01-08 21:16:22] 2026-01-08 20:15:26,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 21:16:22] 2026-01-08 20:15:26,687 | INFO     | time since job start (14194s) is within the limit (174528.0s)
[2026-01-08 21:16:22] 2026-01-08 20:15:28,694 | INFO     | time since job start (14196s) is within the limit (174528.0s)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,049 | INFO     | monitor loop #963: job 0:6962015697 is in state 'finished'
[2026-01-08 21:16:22] 2026-01-08 20:15:29,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,416 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 21:16:22] 2026-01-08 20:15:29,439 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2521.9327265624993
[2026-01-08 21:16:22] 2026-01-08 20:15:29,466 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6962015697/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,467 | INFO     | extracted standard info from prmon json
[2026-01-08 21:16:22] 2026-01-08 20:15:29,467 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 21:16:22] 2026-01-08 20:15:29,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 21:16:22] 2026-01-08 20:15:29,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 21:16:22] 2026-01-08 20:15:29,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 21:16:22] 2026-01-08 20:15:29,472 | INFO     | fitting pss+swap vs Time
[2026-01-08 21:16:22] 2026-01-08 20:15:29,473 | INFO     | sum of square deviations: 3871990738.0
[2026-01-08 21:16:22] 2026-01-08 20:15:29,475 | INFO     | sum of deviations: -32785650754.499992
[2026-01-08 21:16:22] 2026-01-08 20:15:29,475 | INFO     | mean x: 1767896212.5
[2026-01-08 21:16:22] 2026-01-08 20:15:29,475 | INFO     | mean y: 2376943.331896552
[2026-01-08 21:16:22] 2026-01-08 20:15:29,475 | INFO     | intersect: 14971841416.577831
[2026-01-08 21:16:22] 2026-01-08 20:15:29,476 | INFO     | chi2: 1.4149991582123025
[2026-01-08 21:16:22] 2026-01-08 20:15:29,476 | INFO     | sum of square deviations: 3627000098.0
[2026-01-08 21:16:22] 2026-01-08 20:15:29,478 | INFO     | sum of deviations: -31774980702.999996
[2026-01-08 21:16:22] 2026-01-08 20:15:29,478 | INFO     | mean x: 1767896060.0
[2026-01-08 21:16:22] 2026-01-08 20:15:29,478 | INFO     | mean y: 2377572.5418502204
[2026-01-08 21:16:22] 2026-01-08 20:15:29,478 | INFO     | intersect: 15490346051.612381
[2026-01-08 21:16:22] 2026-01-08 20:15:29,478 | INFO     | chi2: 1.4126533561100223
[2026-01-08 21:16:22] 2026-01-08 20:15:29,478 | INFO     | current chi2=1.4126533561100223 (change=0.1657811659226609 %)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,479 | INFO     | right removable region: 226
[2026-01-08 21:16:22] 2026-01-08 20:15:29,479 | INFO     | sum of square deviations: 3627000098.0
[2026-01-08 21:16:22] 2026-01-08 20:15:29,480 | INFO     | sum of deviations: -56623345099.0
[2026-01-08 21:16:22] 2026-01-08 20:15:29,481 | INFO     | mean x: 1767896365.0
[2026-01-08 21:16:22] 2026-01-08 20:15:29,481 | INFO     | mean y: 2391551.607929515
[2026-01-08 21:16:22] 2026-01-08 20:15:29,481 | INFO     | intersect: 27602116743.195908
[2026-01-08 21:16:22] 2026-01-08 20:15:29,481 | INFO     | chi2: 0.18546284068133578
[2026-01-08 21:16:22] 2026-01-08 20:15:29,481 | INFO     | current chi2=0.18546284068133578 (change=86.89307766686957 %)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,482 | INFO     | sum of square deviations: 3392567795.5
[2026-01-08 21:16:22] 2026-01-08 20:15:29,483 | INFO     | sum of deviations: -45664138962.00001
[2026-01-08 21:16:22] 2026-01-08 20:15:29,483 | INFO     | mean x: 1767896517.5
[2026-01-08 21:16:22] 2026-01-08 20:15:29,483 | INFO     | mean y: 2384418.945945946
[2026-01-08 21:16:22] 2026-01-08 20:15:29,483 | INFO     | intersect: 23798363486.0814
[2026-01-08 21:16:22] 2026-01-08 20:15:29,484 | INFO     | chi2: 0.14625078400490815
[2026-01-08 21:16:22] 2026-01-08 20:15:29,484 | INFO     | current chi2=0.14625078400490815 (change=21.14281035078191 %)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,484 | INFO     | left removable region: 20
[2026-01-08 21:16:22] 2026-01-08 20:15:29,484 | INFO     | sum of square deviations: 2710627567.5
[2026-01-08 21:16:22] 2026-01-08 20:15:29,485 | INFO     | sum of deviations: -32337308593.000004
[2026-01-08 21:16:22] 2026-01-08 20:15:29,486 | INFO     | mean x: 1767896639.5
[2026-01-08 21:16:22] 2026-01-08 20:15:29,486 | INFO     | mean y: 2376747.427184466
[2026-01-08 21:16:22] 2026-01-08 20:15:29,486 | INFO     | intersect: 21093071713.23022
[2026-01-08 21:16:22] 2026-01-08 20:15:29,486 | INFO     | chi2: 0.11759493718805966
[2026-01-08 21:16:22] 2026-01-08 20:15:29,486 | INFO     | current memory leak: -11.93 B/s (using 206 data points, chi2=0.12)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,487 | INFO     | could have reported an average CPU frequency of 2563 MHz (11 samples)
[2026-01-08 21:16:22] 2026-01-08 20:15:29,487 | INFO     | ..............................
[2026-01-08 21:16:22] 2026-01-08 20:15:29,487 | INFO     | . Timing measurements:
[2026-01-08 21:16:22] 2026-01-08 20:15:29,487 | INFO     | . get job = 0 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,487 | INFO     | . initial setup = 1 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,487 | INFO     | . payload setup = 9 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,488 | INFO     | . stage-in = 0 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,488 | INFO     | . payload execution = 14153 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,488 | INFO     | . stage-out = 1 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,488 | INFO     | . log creation = 0 s
[2026-01-08 21:16:22] 2026-01-08 20:15:29,488 | INFO     | ..............................
[2026-01-08 21:16:22] 2026-01-08 20:15:30,058 | INFO     | 
[2026-01-08 21:16:22] 2026-01-08 20:15:30,058 | INFO     | job summary report
[2026-01-08 21:16:22] 2026-01-08 20:15:30,058 | INFO     | --------------------------------------------------
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | PanDA job id: 6962015697
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | task id: 47898826
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | errors: (none)
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | pilot state: finished 
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | transexitcode: 0
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | exeerrorcode: 0
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | exeerrordiag: 
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | exitcode: 0
[2026-01-08 21:16:22] 2026-01-08 20:15:30,059 | INFO     | exitmsg: OK
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | cpuconsumptiontime: 54536 s
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | nevents: 400
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | neventsw: 0
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | pid: 3787462
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | pgrp: 3787462
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | corecount: 4
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | event service: False
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | sizes: {0: 2283976, 7: 2284238, 11: 2284266, 14166: 2315458, 14167: 2324480, 14169: 2324536, 14179: 2324858}
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | --------------------------------------------------
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | 
[2026-01-08 21:16:22] 2026-01-08 20:15:30,060 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2026-01-08 21:16:22] 2026-01-08 20:15:30,092 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,093 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,093 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,093 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,093 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,093 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,094 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,095 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:16:22] 2026-01-08 20:15:30,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,095 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:16:22] 2026-01-08 20:15:30,095 | INFO     | job 6962015697 has completed (purged errors)
[2026-01-08 21:16:22] 2026-01-08 20:15:30,095 | INFO     | overall cleanup function is called
[2026-01-08 21:16:22] 2026-01-08 20:15:31,105 | INFO     | --- collectZombieJob: --- 10, [3787462]
[2026-01-08 21:16:22] 2026-01-08 20:15:31,105 | INFO     | zombie collector waiting for pid 3787462
[2026-01-08 21:16:22] 2026-01-08 20:15:31,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:16:22] 2026-01-08 20:15:31,106 | INFO     | collected zombie processes
[2026-01-08 21:16:22] 2026-01-08 20:15:31,106 | INFO     | will attempt to kill all subprocesses of pid=3787462
[2026-01-08 21:16:22] 2026-01-08 20:15:31,990 | INFO     | process IDs to be killed: [3787462] (in reverse order)
[2026-01-08 21:16:22] 2026-01-08 20:15:32,254 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:16:22] 2026-01-08 20:15:32,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:16:22] 2026-01-08 20:15:32,289 | INFO     | did not find any defunct processes belonging to 3787462
[2026-01-08 21:16:22] 2026-01-08 20:15:32,322 | INFO     | did not find any defunct processes belonging to 3787462
[2026-01-08 21:16:22] 2026-01-08 20:15:32,323 | INFO     | ready for new job
[2026-01-08 21:16:22] 2026-01-08 20:15:32,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:16:22] 2026-01-08 20:15:32,326 | INFO     | ***************************************
[2026-01-08 21:16:22] 2026-01-08 20:15:32,328 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:16:22] 2026-01-08 20:15:32,329 | INFO     | ***************************************
[2026-01-08 21:16:22] 2026-01-08 20:15:32,329 | INFO     | 
[2026-01-08 21:16:22] 2026-01-08 20:15:32,338 | INFO     | architecture information:
[2026-01-08 21:16:22] 2026-01-08 20:15:32,338 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:16:22] 2026-01-08 20:15:32,360 | INFO     | cat /etc/os-release:
[2026-01-08 21:16:22] NAME="CentOS Linux"
[2026-01-08 21:16:22] VERSION="7 (Core)"
[2026-01-08 21:16:22] ID="centos"
[2026-01-08 21:16:22] ID_LIKE="rhel fedora"
[2026-01-08 21:16:22] VERSION_ID="7"
[2026-01-08 21:16:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:16:22] ANSI_COLOR="0;31"
[2026-01-08 21:16:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:16:22] HOME_URL="https://www.centos.org/"
[2026-01-08 21:16:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:16:22] 
[2026-01-08 21:16:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:16:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:16:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:16:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:16:22] 
[2026-01-08 21:16:22] 2026-01-08 20:15:32,360 | INFO     | ***************************************
[2026-01-08 21:16:22] 2026-01-08 20:15:32,863 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2026-01-08 21:16:22] 2026-01-08 20:15:32,886 | INFO     | sufficient remaining disk space (3327687393280 B)
[2026-01-08 21:16:22] 2026-01-08 20:15:32,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:16:22] 2026-01-08 20:15:32,887 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:16:22] 2026-01-08 20:15:32,887 | INFO     | update_server=False
[2026-01-08 21:16:22] 2026-01-08 20:15:32,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:16:22] 2026-01-08 20:15:32,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:16:22] 2026-01-08 20:15:32,888 | INFO     | aborting loop
[2026-01-08 21:16:22] 2026-01-08 20:15:33,153 | INFO     | all data control threads have been joined
[2026-01-08 21:16:22] 2026-01-08 20:15:33,634 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:16:22] 2026-01-08 20:15:33,839 | INFO     | all job control threads have been joined
[2026-01-08 21:16:22] 2026-01-08 20:15:33,891 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:33,893 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:33,897 | INFO     | [job] validate thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:33,937 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,072 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,078 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,106 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,158 | INFO     | [data] control thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,329 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,349 | INFO     | all payload control threads have been joined
[2026-01-08 21:16:22] 2026-01-08 20:15:34,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:16:22] 2026-01-08 20:15:34,743 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:34,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:16:22] 2026-01-08 20:15:34,845 | INFO     | [job] control thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:35,131 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:35,354 | INFO     | [payload] control thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:35,594 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:35,639 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:15:38,833 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:16:22] 2026-01-08 20:16:02,869 | INFO     | PID=3780096 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 21:16:22] 2026-01-08 20:16:02,869 | INFO     | .. there are 7 such processes running
[2026-01-08 21:16:22] 2026-01-08 20:16:02,869 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:16:22] 2026-01-08 20:16:02,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:16:22] 2026-01-08 20:16:02,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:16:22] 2026-01-08 20:16:14,762 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:16:22] 2026-01-08 20:16:14,839 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22481257621312)>', '<ExcThread(monitor, started 22481018509056)>']
[2026-01-08 21:16:22] 2026-01-08 20:16:14,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:16:22] 2026-01-08 20:16:14,932 | INFO     | [monitor] control thread has ended
[2026-01-08 21:16:22] 2026-01-08 20:16:19,864 | INFO     | all workflow threads have been joined
[2026-01-08 21:16:22] 2026-01-08 20:16:19,864 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:16:22] 2026-01-08 20:16:19,864 | INFO     | traces error code: 0
[2026-01-08 21:16:22] 2026-01-08 20:16:19,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:16:22] 2026-01-08 20:16:20,051 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:16:22] 2026-01-08 20:16:20,055 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:16:22] 2026-01-08 20:16:20,059 [wrapper] pilotpid: 3780096
[2026-01-08 21:16:22] 2026-01-08 20:16:20,065 [wrapper] Pilot exit status: 0
[2026-01-08 21:16:22] 2026-01-08 20:16:20,083 [wrapper] pandaids: 6962015697 6962015697
[2026-01-08 21:16:22] 2026-01-08 20:16:20,271 [wrapper] cleanup supervisor_pilot 4122371 3780097
[2026-01-08 21:16:22] 2026-01-08 20:16:20,276 [wrapper] Test setup, not cleaning
[2026-01-08 21:16:22] 2026-01-08 20:16:20,281 [wrapper] apfmon messages muted
[2026-01-08 21:16:22] 2026-01-08 20:16:20,285 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:16:22] 2026-01-08 20:16:20,289 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:16:22]  *** Error codes and diagnostics ***
[2026-01-08 21:16:22]     "exeErrorCode": 0,
[2026-01-08 21:16:22]     "exeErrorDiag": "",
[2026-01-08 21:16:22]     "pilotErrorCode": 0,
[2026-01-08 21:16:22]     "pilotErrorDiag": "",
[2026-01-08 21:16:22]  *** Listing of results directory ***
[2026-01-08 21:16:22] total 662984
[2026-01-08 21:16:22] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 21:16:22] -rwx------ 1 boinc boinc     36322 Jan  7 16:31 runpilot2-wrapper.sh
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc      5112 Jan  7 16:31 queuedata.json
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc       100 Jan  8 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:16:22] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 15:31 run_atlas
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc       105 Jan  8 15:31 job.xml
[2026-01-08 21:16:22] -rw-r--r-- 3 boinc boinc 225849704 Jan  8 15:31 EVNT.47898824._000376.pool.root.1
[2026-01-08 21:16:22] -rw-r--r-- 3 boinc boinc 225849704 Jan  8 15:31 ATLAS.root_0
[2026-01-08 21:16:22] drwxrwx--x 2 boinc boinc      4096 Jan  8 15:31 shared
[2026-01-08 21:16:22] -rw-r--r-- 2 boinc boinc    592393 Jan  8 15:31 input.tar.gz
[2026-01-08 21:16:22] -rw-r--r-- 2 boinc boinc     15847 Jan  8 15:31 start_atlas.sh
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc         0 Jan  8 15:31 boinc_lockfile
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc      6697 Jan  8 17:18 init_data.xml
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc      2516 Jan  8 17:18 pandaJob.out
[2026-01-08 21:16:22] -rw------- 1 boinc boinc    989837 Jan  8 17:18 agis_schedconf.cvmfs.json
[2026-01-08 21:16:22] -rw------- 1 boinc boinc 218564651 Jan  8 21:14 HITS.47898826._008964.pool.root.1
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc       528 Jan  8 21:15 boinc_task_state.xml
[2026-01-08 21:16:22] -rw------- 1 boinc boinc      1028 Jan  8 21:15 memory_monitor_summary.json
[2026-01-08 21:16:22] -rw------- 1 boinc boinc   1516240 Jan  8 21:15 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:16:22] -rw------- 1 boinc boinc    398762 Jan  8 21:15 log.47898826._008964.job.log.tgz.1
[2026-01-08 21:16:22] -rw------- 1 boinc boinc        96 Jan  8 21:15 pilot_heartbeat.json
[2026-01-08 21:16:22] -rw------- 1 boinc boinc      7786 Jan  8 21:15 heartbeat.json
[2026-01-08 21:16:22] -rw------- 1 boinc boinc      4835 Jan  8 21:16 pilotlog.txt
[2026-01-08 21:16:22] -rw------- 1 boinc boinc   1959811 Jan  8 21:16 log.47898826._008964.job.log.1
[2026-01-08 21:16:22] -rw------- 1 boinc boinc       357 Jan  8 21:16 output.list
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc       620 Jan  8 21:16 runtime_log
[2026-01-08 21:16:22] -rw------- 1 boinc boinc   2375680 Jan  8 21:16 result.tar.gz
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc      9300 Jan  8 21:16 runtime_log.err
[2026-01-08 21:16:22] -rw------- 1 boinc boinc       792 Jan  8 21:16 C1DLDmNgkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmc8cKDmpp4oRo.diag
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc        26 Jan  8 21:16 wrapper_checkpoint.txt
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc      8192 Jan  8 21:16 boinc_mmap_file
[2026-01-08 21:16:22] -rw-r--r-- 1 boinc boinc     23134 Jan  8 21:16 stderr.txt
[2026-01-08 21:16:22] HITS file was successfully produced:
[2026-01-08 21:16:22] -rw------- 1 boinc boinc 218564651 Jan  8 21:14 shared/HITS.pool.root.1
[2026-01-08 21:16:22]  *** Contents of shared directory: ***
[2026-01-08 21:16:22] total 436924
[2026-01-08 21:16:22] -rw-r--r-- 3 boinc boinc 225849704 Jan  8 15:31 ATLAS.root_0
[2026-01-08 21:16:22] -rw-r--r-- 2 boinc boinc    592393 Jan  8 15:31 input.tar.gz
[2026-01-08 21:16:22] -rw-r--r-- 2 boinc boinc     15847 Jan  8 15:31 start_atlas.sh
[2026-01-08 21:16:22] -rw------- 1 boinc boinc 218564651 Jan  8 21:14 HITS.pool.root.1
[2026-01-08 21:16:22] -rw------- 1 boinc boinc   2375680 Jan  8 21:16 result.tar.gz
21:16:24 (3776015): run_atlas exited; CPU time 55581.194254
21:16:24 (3776015): called boinc_finish(0)

</stderr_txt>
]]>

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