Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:47:24 (7618): wrapper (7.7.26015): starting
22:47:24 (7618): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 22:47:24] Arguments: --nthreads 8
[2026-01-07 22:47:24] Threads: 8
[2026-01-07 22:47:24] Checking for CVMFS
[2026-01-07 22:47:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 22:47:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 22:47:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 22:47:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 22:47:27] 2.11.2.0 1035 33095 96896 154880 2 60 16752806 25165825 96 130560 0 13560928 99.804 9983798 4460 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-07 22:47:27] CVMFS is ok
[2026-01-07 22:47:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 22:47:27] Checking for apptainer binary...
[2026-01-07 22:47:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 22:47:27] Running /usr/bin/apptainer --version
[2026-01-07 22:47:27] apptainer version 1.3.2-1.el7
[2026-01-07 22:47:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 22:47:37] cg-vwn358.simple-grid.lan
[2026-01-07 22:47:37] apptainer works
[2026-01-07 22:47:38] Set ATHENA_PROC_NUMBER=8
[2026-01-07 22:47:38] Set ATHENA_CORE_NUMBER=8
[2026-01-07 22:47:38] Starting ATLAS job with PandaID=6962014707
[2026-01-07 22:47:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 05:12:36]  *** The last 200 lines of the pilot log: ***
[2026-01-08 05:12:36] 2026-01-08 04:11:24,708 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 05:12:36] 2026-01-08 04:11:24,710 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6962014707/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,710 | INFO     | extracted standard info from prmon json
[2026-01-08 05:12:36] 2026-01-08 04:11:24,711 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 05:12:36] 2026-01-08 04:11:24,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 05:12:36] 2026-01-08 04:11:24,711 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 05:12:36] 2026-01-08 04:11:24,711 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 05:12:36] 2026-01-08 04:11:24,725 | INFO     | fitting pss+swap vs Time
[2026-01-08 05:12:36] 2026-01-08 04:11:24,726 | INFO     | sum of square deviations: 14831839022.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,731 | INFO     | sum of deviations: 236559896856.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,731 | INFO     | mean x: 1767834295.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,731 | INFO     | mean y: 2441124.743801653
[2026-01-08 05:12:36] 2026-01-08 04:11:24,731 | INFO     | intersect: -28193570028.248573
[2026-01-08 05:12:36] 2026-01-08 04:11:24,732 | INFO     | chi2: 8.905438283466777
[2026-01-08 05:12:36] 2026-01-08 04:11:24,732 | INFO     | sum of square deviations: 14227353269.5
[2026-01-08 05:12:36] 2026-01-08 04:11:24,740 | INFO     | sum of deviations: 256943262155.49994
[2026-01-08 05:12:36] 2026-01-08 04:11:24,740 | INFO     | mean x: 1767834142.5
[2026-01-08 05:12:36] 2026-01-08 04:11:24,740 | INFO     | mean y: 2446199.444134078
[2026-01-08 05:12:36] 2026-01-08 04:11:24,740 | INFO     | intersect: -31924298214.6126
[2026-01-08 05:12:36] 2026-01-08 04:11:24,741 | INFO     | chi2: 8.184938839137772
[2026-01-08 05:12:36] 2026-01-08 04:11:24,741 | INFO     | current chi2=8.184938839137772 (change=8.090555696361799 %)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,741 | INFO     | right removable region: 357
[2026-01-08 05:12:36] 2026-01-08 04:11:24,742 | INFO     | sum of square deviations: 14227353269.5
[2026-01-08 05:12:36] 2026-01-08 04:11:24,746 | INFO     | sum of deviations: 107393058217.99998
[2026-01-08 05:12:36] 2026-01-08 04:11:24,747 | INFO     | mean x: 1767834447.5
[2026-01-08 05:12:36] 2026-01-08 04:11:24,747 | INFO     | mean y: 2473700.0223463685
[2026-01-08 05:12:36] 2026-01-08 04:11:24,747 | INFO     | intersect: -13341761460.508354
[2026-01-08 05:12:36] 2026-01-08 04:11:24,755 | INFO     | chi2: 3.8651342328645404
[2026-01-08 05:12:36] 2026-01-08 04:11:24,756 | INFO     | current chi2=3.8651342328645404 (change=56.598045937387695 %)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,756 | INFO     | sum of square deviations: 13639518992.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,761 | INFO     | sum of deviations: 9377964319.999989
[2026-01-08 05:12:36] 2026-01-08 04:11:24,761 | INFO     | mean x: 1767834600.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,761 | INFO     | mean y: 2499104.5382436262
[2026-01-08 05:12:36] 2026-01-08 04:11:24,761 | INFO     | intersect: -1212990225.5609605
[2026-01-08 05:12:36] 2026-01-08 04:11:24,762 | INFO     | chi2: 1.1196674092034637
[2026-01-08 05:12:36] 2026-01-08 04:11:24,762 | INFO     | current chi2=1.1196674092034637 (change=71.03160351629879 %)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,763 | INFO     | sum of square deviations: 13068103627.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,767 | INFO     | sum of deviations: -17620656511.499996
[2026-01-08 05:12:36] 2026-01-08 04:11:24,767 | INFO     | mean x: 1767834752.5
[2026-01-08 05:12:36] 2026-01-08 04:11:24,767 | INFO     | mean y: 2506282.6982758623
[2026-01-08 05:12:36] 2026-01-08 04:11:24,767 | INFO     | intersect: 2386204012.0715933
[2026-01-08 05:12:36] 2026-01-08 04:11:24,768 | INFO     | chi2: 0.8512976231783691
[2026-01-08 05:12:36] 2026-01-08 04:11:24,768 | INFO     | current chi2=0.8512976231783691 (change=23.96870569055985 %)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,768 | INFO     | left removable region: 30
[2026-01-08 05:12:36] 2026-01-08 04:11:24,769 | INFO     | sum of square deviations: 10842205148.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,772 | INFO     | sum of deviations: -5586875868.999999
[2026-01-08 05:12:36] 2026-01-08 04:11:24,772 | INFO     | mean x: 1767835027.0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,773 | INFO     | mean y: 2515604.211009174
[2026-01-08 05:12:36] 2026-01-08 04:11:24,773 | INFO     | intersect: 913462659.5285482
[2026-01-08 05:12:36] 2026-01-08 04:11:24,773 | INFO     | chi2: 0.01849570440774023
[2026-01-08 05:12:36] 2026-01-08 04:11:24,774 | INFO     | current memory leak: -0.52 B/s (using 327 data points, chi2=0.02)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,779 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | ..............................
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | . Timing measurements:
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | . get job = 0 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | . initial setup = 11 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | . payload setup = 154 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | . stage-in = 0 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,780 | INFO     | . payload execution = 22290 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,781 | INFO     | . stage-out = 4 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,781 | INFO     | . log creation = 1 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,781 | INFO     | ..............................
[2026-01-08 05:12:36] 2026-01-08 04:11:24,781 | INFO     | monitor loop #1611: job 0:6962014707 is in state 'finished'
[2026-01-08 05:12:36] 2026-01-08 04:11:24,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,908 | INFO     | 
[2026-01-08 05:12:36] 2026-01-08 04:11:24,908 | INFO     | job summary report
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | --------------------------------------------------
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | PanDA job id: 6962014707
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | task id: 47898826
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | errors: (none)
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | pilot state: finished 
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | transexitcode: 0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | exeerrorcode: 0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,909 | INFO     | exeerrordiag: 
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | exitcode: 0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | exitmsg: OK
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | cpuconsumptiontime: 83292 s
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | nevents: 400
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | neventsw: 0
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | pid: 17799
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | pgrp: 17799
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | corecount: 8
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | event service: False
[2026-01-08 05:12:36] 2026-01-08 04:11:24,910 | INFO     | sizes: {0: 2283136, 1: 2283821, 2: 2284020, 13: 2284020, 23: 2284076, 34: 2284104, 45: 2284260, 56: 2284288, 66: 2284316, 77: 2284344, 88: 2284400, 98: 2284708, 10
[2026-01-08 05:12:36] 2026-01-08 04:11:24,911 | INFO     | --------------------------------------------------
[2026-01-08 05:12:36] 2026-01-08 04:11:24,911 | INFO     | 
[2026-01-08 05:12:36] 2026-01-08 04:11:24,911 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-08 05:12:36] 2026-01-08 04:11:25,324 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,324 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,324 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 05:12:36] 2026-01-08 04:11:25,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,327 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 05:12:36] 2026-01-08 04:11:25,327 | INFO     | job 6962014707 has completed (purged errors)
[2026-01-08 05:12:36] 2026-01-08 04:11:25,327 | INFO     | overall cleanup function is called
[2026-01-08 05:12:36] 2026-01-08 04:11:26,336 | INFO     | --- collectZombieJob: --- 10, [17799]
[2026-01-08 05:12:36] 2026-01-08 04:11:26,337 | INFO     | zombie collector waiting for pid 17799
[2026-01-08 05:12:36] 2026-01-08 04:11:26,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 05:12:36] 2026-01-08 04:11:26,337 | INFO     | collected zombie processes
[2026-01-08 05:12:36] 2026-01-08 04:11:26,337 | INFO     | will attempt to kill all subprocesses of pid=17799
[2026-01-08 05:12:36] 2026-01-08 04:11:26,459 | INFO     | process IDs to be killed: [17799] (in reverse order)
[2026-01-08 05:12:36] 2026-01-08 04:11:27,173 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 05:12:36] 2026-01-08 04:11:27,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 05:12:36] 2026-01-08 04:11:27,176 | INFO     | did not find any defunct processes belonging to 17799
[2026-01-08 05:12:36] 2026-01-08 04:11:27,178 | INFO     | did not find any defunct processes belonging to 17799
[2026-01-08 05:12:36] 2026-01-08 04:11:27,178 | INFO     | ready for new job
[2026-01-08 05:12:36] 2026-01-08 04:11:27,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 05:12:36] 2026-01-08 04:11:27,181 | INFO     | ***************************************
[2026-01-08 05:12:36] 2026-01-08 04:11:27,181 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 05:12:36] 2026-01-08 04:11:27,181 | INFO     | ***************************************
[2026-01-08 05:12:36] 2026-01-08 04:11:27,181 | INFO     | 
[2026-01-08 05:12:36] 2026-01-08 04:11:27,182 | INFO     | pilot is running in a VM
[2026-01-08 05:12:36] 2026-01-08 04:11:27,182 | INFO     | architecture information:
[2026-01-08 05:12:36] 2026-01-08 04:11:27,190 | INFO     | executing command: cat /etc/os-release
[2026-01-08 05:12:36] 2026-01-08 04:11:27,464 | INFO     | cat /etc/os-release:
[2026-01-08 05:12:36] NAME="CentOS Linux"
[2026-01-08 05:12:36] VERSION="7 (Core)"
[2026-01-08 05:12:36] ID="centos"
[2026-01-08 05:12:36] ID_LIKE="rhel fedora"
[2026-01-08 05:12:36] VERSION_ID="7"
[2026-01-08 05:12:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 05:12:36] ANSI_COLOR="0;31"
[2026-01-08 05:12:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 05:12:36] HOME_URL="https://www.centos.org/"
[2026-01-08 05:12:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 05:12:36] 
[2026-01-08 05:12:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 05:12:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 05:12:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 05:12:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 05:12:36] 
[2026-01-08 05:12:36] 2026-01-08 04:11:27,464 | INFO     | ***************************************
[2026-01-08 05:12:36] 2026-01-08 04:11:27,968 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-08 05:12:36] 2026-01-08 04:11:28,265 | INFO     | sufficient remaining disk space (496863543296 B)
[2026-01-08 05:12:36] 2026-01-08 04:11:28,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 05:12:36] 2026-01-08 04:11:28,266 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 05:12:36] 2026-01-08 04:11:28,266 | INFO     | update_server=False
[2026-01-08 05:12:36] 2026-01-08 04:11:28,266 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 05:12:36] 2026-01-08 04:11:28,294 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:12:36] 2026-01-08 04:11:28,295 | INFO     | aborting loop
[2026-01-08 05:12:36] 2026-01-08 04:11:28,483 | INFO     | all data control threads have been joined
[2026-01-08 05:12:36] 2026-01-08 04:11:28,942 | INFO     | all job control threads have been joined
[2026-01-08 05:12:36] 2026-01-08 04:11:29,272 | INFO     | [job] retrieve thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:29,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 05:12:36] 2026-01-08 04:11:29,301 | INFO     | [job] job monitor thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:29,489 | INFO     | [data] control thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:29,609 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:29,657 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:29,713 | INFO     | all payload control threads have been joined
[2026-01-08 05:12:36] 2026-01-08 04:11:29,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 05:12:36] 2026-01-08 04:11:29,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:12:36] 2026-01-08 04:11:29,948 | INFO     | [job] control thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,009 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,093 | INFO     | [payload] failed_post thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,498 | INFO     | [data] copytool_in thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,518 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,623 | INFO     | [job] validate thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,719 | INFO     | [payload] control thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,732 | INFO     | [payload] validate_post thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:30,933 | INFO     | [job] queue monitor thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:31,282 | INFO     | [data] copytool_out thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:33,854 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 05:12:36] 2026-01-08 04:11:57,003 | INFO     | PID=11335 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 05:12:36] 2026-01-08 04:11:57,003 | INFO     | .. there are 2 such processes running
[2026-01-08 05:12:36] 2026-01-08 04:11:57,004 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 05:12:36] 2026-01-08 04:11:57,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 05:12:36] 2026-01-08 04:11:57,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 05:12:36] 2026-01-08 04:12:23,546 | INFO     | [monitor] cgroup control has ended
[2026-01-08 05:12:36] 2026-01-08 04:12:25,122 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641746003776)>', '<ExcThread(monitor, started 140641304565504)>']
[2026-01-08 05:12:36] 2026-01-08 04:12:25,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 05:12:36] 2026-01-08 04:12:25,173 | INFO     | [monitor] control thread has ended
[2026-01-08 05:12:36] 2026-01-08 04:12:30,148 | INFO     | all workflow threads have been joined
[2026-01-08 05:12:36] 2026-01-08 04:12:30,149 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 05:12:36] 2026-01-08 04:12:30,149 | INFO     | traces error code: 0
[2026-01-08 05:12:36] 2026-01-08 04:12:30,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 05:12:36] 2026-01-08 04:12:30,548 [wrapper] ==== pilot stdout END ====
[2026-01-08 05:12:36] 2026-01-08 04:12:30,673 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 05:12:36] 2026-01-08 04:12:30,815 [wrapper] pilotpid: 11335
[2026-01-08 05:12:36] 2026-01-08 04:12:30,941 [wrapper] Pilot exit status: 0
[2026-01-08 05:12:36] 2026-01-08 04:12:31,575 [wrapper] pandaids: 6962014707
[2026-01-08 05:12:36] 2026-01-08 04:12:32,800 [wrapper] cleanup supervisor_pilot 19569 11336
[2026-01-08 05:12:36] 2026-01-08 04:12:32,916 [wrapper] Test setup, not cleaning
[2026-01-08 05:12:36] 2026-01-08 04:12:32,969 [wrapper] apfmon messages muted
[2026-01-08 05:12:36] 2026-01-08 04:12:33,031 [wrapper] ==== wrapper stdout END ====
[2026-01-08 05:12:36] 2026-01-08 04:12:33,130 [wrapper] ==== wrapper stderr END ====
[2026-01-08 05:12:36]  *** Error codes and diagnostics ***
[2026-01-08 05:12:36]     "exeErrorCode": 0,
[2026-01-08 05:12:36]     "exeErrorDiag": "",
[2026-01-08 05:12:36]     "pilotErrorCode": 0,
[2026-01-08 05:12:36]     "pilotErrorDiag": "",
[2026-01-08 05:12:36]  *** Listing of results directory ***
[2026-01-08 05:12:36] total 449252
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 05:12:36] -rwx------. 1 boinc boinc     36322 Jan  7 16:31 runpilot2-wrapper.sh
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc      5112 Jan  7 16:31 queuedata.json
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc       100 Jan  7 22:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 05:12:36] -rwxr-xr-x. 1 boinc boinc      7986 Jan  7 22:47 run_atlas
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc       105 Jan  7 22:47 job.xml
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc      6390 Jan  7 22:47 init_data.xml
[2026-01-08 05:12:36] -rw-r--r--. 2 boinc boinc 224688016 Jan  7 22:47 EVNT.47898824._000360.pool.root.1
[2026-01-08 05:12:36] -rw-r--r--. 2 boinc boinc     15847 Jan  7 22:47 start_atlas.sh
[2026-01-08 05:12:36] drwxrwx--x. 2 boinc boinc        68 Jan  7 22:47 shared
[2026-01-08 05:12:36] -rw-r--r--. 2 boinc boinc    592390 Jan  7 22:47 input.tar.gz
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc         0 Jan  7 22:47 boinc_lockfile
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc      2516 Jan  7 22:47 pandaJob.out
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc    989785 Jan  7 22:51 agis_schedconf.cvmfs.json
[2026-01-08 05:12:36] drwx------. 5 boinc boinc      4096 Jan  7 22:51 pilot3
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc 224287909 Jan  8 05:07 HITS.47898826._008559.pool.root.1
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc       531 Jan  8 05:08 boinc_task_state.xml
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc      1014 Jan  8 05:09 memory_monitor_summary.json
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc   1516240 Jan  8 05:09 agis_ddmendpoints.agis.ALL.json
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc    555407 Jan  8 05:09 log.47898826._008559.job.log.tgz.1
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc      7777 Jan  8 05:11 heartbeat.json
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc        95 Jan  8 05:11 pilot_heartbeat.json
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc      8192 Jan  8 05:12 boinc_mmap_file
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc        28 Jan  8 05:12 wrapper_checkpoint.txt
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc      4884 Jan  8 05:12 pilotlog.txt
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc   3023178 Jan  8 05:12 log.47898826._008559.job.log.1
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc       357 Jan  8 05:12 output.list
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc       620 Jan  8 05:12 runtime_log
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc   3594240 Jan  8 05:12 result.tar.gz
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc      8817 Jan  8 05:12 runtime_log.err
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc       657 Jan  8 05:12 3vmKDmBgkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm67cKDm6TQHOn.diag
[2026-01-08 05:12:36] -rw-r--r--. 1 boinc boinc     20824 Jan  8 05:12 stderr.txt
[2026-01-08 05:12:36] HITS file was successfully produced:
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc 224287909 Jan  8 05:07 shared/HITS.pool.root.1
[2026-01-08 05:12:36]  *** Contents of shared directory: ***
[2026-01-08 05:12:36] total 442564
[2026-01-08 05:12:36] -rw-r--r--. 2 boinc boinc 224688016 Jan  7 22:47 ATLAS.root_0
[2026-01-08 05:12:36] -rw-r--r--. 2 boinc boinc     15847 Jan  7 22:47 start_atlas.sh
[2026-01-08 05:12:36] -rw-r--r--. 2 boinc boinc    592390 Jan  7 22:47 input.tar.gz
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc 224287909 Jan  8 05:07 HITS.pool.root.1
[2026-01-08 05:12:36] -rw-------. 1 boinc boinc   3594240 Jan  8 05:12 result.tar.gz
05:12:37 (7618): run_atlas exited; CPU time 83524.691195
05:12:37 (7618): called boinc_finish(0)

</stderr_txt>
]]>

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