Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:43 (891348): wrapper (7.7.26015): starting
10:30:43 (891348): wrapper: running run_atlas (--nthreads 12)
[2026-01-07 10:30:43] Arguments: --nthreads 12
[2026-01-07 10:30:43] Threads: 12
[2026-01-07 10:30:43] Checking for CVMFS
[2026-01-07 10:30:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 10:30:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 10:30:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 10:30:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 10:30:45] 2.13.3.0 9428 89017 328984 154872 2 54 13173081 18491393 15728 16776704 0 389658473 99.347 635829088 33357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 10:30:45] CVMFS is ok
[2026-01-07 10:30:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 10:30:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 10:30:45] Further information can be found at the LHC@home message board.
[2026-01-07 10:30:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 10:30:45] Checking for apptainer binary...
[2026-01-07 10:30:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 10:30:45] Running /usr/bin/apptainer --version
[2026-01-07 10:30:46] apptainer version 1.4.5-2.el9
[2026-01-07 10:30:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 10:30:46] c-8-38.aglt2.org
[2026-01-07 10:30:46] apptainer works
[2026-01-07 10:30:47] Set ATHENA_PROC_NUMBER=12
[2026-01-07 10:30:47] Set ATHENA_CORE_NUMBER=12
[2026-01-07 10:30:47] Starting ATLAS job with PandaID=6962012642
[2026-01-07 10:30:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 14:37:36]  *** The last 200 lines of the pilot log: ***
[2026-01-07 14:37:36] 2026-01-07 19:36:55,144 | INFO     | time since job start (14709s) is within the limit (174528.0s)
[2026-01-07 14:37:36] 2026-01-07 19:36:57,087 | INFO     | monitor loop #905: job 0:6962012642 is in state 'finished'
[2026-01-07 14:37:36] 2026-01-07 19:36:57,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-07 14:37:36] 2026-01-07 19:36:57,153 | INFO     | time since job start (14711s) is within the limit (174528.0s)
[2026-01-07 14:37:36] 2026-01-07 19:36:59,168 | INFO     | time since job start (14713s) is within the limit (174528.0s)
[2026-01-07 14:37:36] 2026-01-07 19:36:59,593 | INFO     | monitor loop #906: job 0:6962012642 is in state 'finished'
[2026-01-07 14:37:36] 2026-01-07 19:36:59,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-07 14:37:36] 2026-01-07 19:37:00,941 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-07 14:37:36] 2026-01-07 19:37:00,986 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2452749999998
[2026-01-07 14:37:36] 2026-01-07 19:37:00,996 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962012642/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 14:37:36] 2026-01-07 19:37:00,997 | INFO     | extracted standard info from prmon json
[2026-01-07 14:37:36] 2026-01-07 19:37:00,997 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 14:37:36] 2026-01-07 19:37:00,998 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 14:37:36] 2026-01-07 19:37:00,998 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 14:37:36] 2026-01-07 19:37:00,998 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 14:37:36] 2026-01-07 19:37:01,003 | INFO     | fitting pss+swap vs Time
[2026-01-07 14:37:36] 2026-01-07 19:37:01,004 | INFO     | sum of square deviations: 4233080865.665255
[2026-01-07 14:37:36] 2026-01-07 19:37:01,006 | INFO     | sum of deviations: -7653507731.661085
[2026-01-07 14:37:36] 2026-01-07 19:37:01,006 | INFO     | mean x: 1767807281.5188284
[2026-01-07 14:37:36] 2026-01-07 19:37:01,006 | INFO     | mean y: 2689762.9246861925
[2026-01-07 14:37:36] 2026-01-07 19:37:01,006 | INFO     | intersect: 3198926056.668346
[2026-01-07 14:37:36] 2026-01-07 19:37:01,007 | INFO     | chi2: 3.5536620638680603
[2026-01-07 14:37:36] 2026-01-07 19:37:01,007 | INFO     | sum of square deviations: 3972955666.790594
[2026-01-07 14:37:36] 2026-01-07 19:37:01,009 | INFO     | sum of deviations: 9849568556.632486
[2026-01-07 14:37:36] 2026-01-07 19:37:01,009 | INFO     | mean x: 1767807129.0299146
[2026-01-07 14:37:36] 2026-01-07 19:37:01,009 | INFO     | mean y: 2699850.623931624
[2026-01-07 14:37:36] 2026-01-07 19:37:01,009 | INFO     | intersect: -4379966097.005318
[2026-01-07 14:37:36] 2026-01-07 19:37:01,010 | INFO     | chi2: 2.768749071273512
[2026-01-07 14:37:36] 2026-01-07 19:37:01,010 | INFO     | current chi2=2.768749071273512 (change=22.08744046247866 %)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,010 | INFO     | right removable region: 233
[2026-01-07 14:37:36] 2026-01-07 19:37:01,011 | INFO     | sum of square deviations: 3972880026.790594
[2026-01-07 14:37:36] 2026-01-07 19:37:01,012 | INFO     | sum of deviations: -66448538528.5855
[2026-01-07 14:37:36] 2026-01-07 19:37:01,013 | INFO     | mean x: 1767807434.0299146
[2026-01-07 14:37:36] 2026-01-07 19:37:01,013 | INFO     | mean y: 2724038.2264957265
[2026-01-07 14:37:36] 2026-01-07 19:37:01,013 | INFO     | intersect: 29570246741.93895
[2026-01-07 14:37:36] 2026-01-07 19:37:01,013 | INFO     | chi2: 1.2233084992285665
[2026-01-07 14:37:36] 2026-01-07 19:37:01,013 | INFO     | current chi2=1.2233084992285665 (change=65.57611620793706 %)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,014 | INFO     | sum of square deviations: 3723563112.855879
[2026-01-07 14:37:36] 2026-01-07 19:37:01,016 | INFO     | sum of deviations: -74311157965.8384
[2026-01-07 14:37:36] 2026-01-07 19:37:01,016 | INFO     | mean x: 1767807586.5414848
[2026-01-07 14:37:36] 2026-01-07 19:37:01,016 | INFO     | mean y: 2728820.8777292576
[2026-01-07 14:37:36] 2026-01-07 19:37:01,016 | INFO     | intersect: 35282869061.58819
[2026-01-07 14:37:36] 2026-01-07 19:37:01,017 | INFO     | chi2: 1.1443485638582465
[2026-01-07 14:37:36] 2026-01-07 19:37:01,017 | INFO     | current chi2=1.1443485638582465 (change=6.454621660857682 %)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,017 | INFO     | left removable region: 20
[2026-01-07 14:37:36] 2026-01-07 19:37:01,017 | INFO     | sum of square deviations: 2996311836.2629023
[2026-01-07 14:37:36] 2026-01-07 19:37:01,019 | INFO     | sum of deviations: -39914958080.04696
[2026-01-07 14:37:36] 2026-01-07 19:37:01,019 | INFO     | mean x: 1767807708.5680752
[2026-01-07 14:37:36] 2026-01-07 19:37:01,019 | INFO     | mean y: 2729238.9342723005
[2026-01-07 14:37:36] 2026-01-07 19:37:01,019 | INFO     | intersect: 23552337703.280823
[2026-01-07 14:37:36] 2026-01-07 19:37:01,020 | INFO     | chi2: 0.2767214406677469
[2026-01-07 14:37:36] 2026-01-07 19:37:01,020 | INFO     | current memory leak: -13.32 B/s (using 213 data points, chi2=0.28)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,025 | INFO     | could have reported an average CPU frequency of 2600 MHz (11 samples)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,025 | INFO     | ..............................
[2026-01-07 14:37:36] 2026-01-07 19:37:01,025 | INFO     | . Timing measurements:
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . get job = 0 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . initial setup = 6 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . payload setup = 33 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . stage-in = 0 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . payload execution = 14586 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . stage-out = 4 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | . log creation = 0 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,026 | INFO     | ..............................
[2026-01-07 14:37:36] 2026-01-07 19:37:01,206 | INFO     | 
[2026-01-07 14:37:36] 2026-01-07 19:37:01,206 | INFO     | job summary report
[2026-01-07 14:37:36] 2026-01-07 19:37:01,206 | INFO     | --------------------------------------------------
[2026-01-07 14:37:36] 2026-01-07 19:37:01,206 | INFO     | PanDA job id: 6962012642
[2026-01-07 14:37:36] 2026-01-07 19:37:01,206 | INFO     | task id: 47898826
[2026-01-07 14:37:36] 2026-01-07 19:37:01,206 | INFO     | errors: (none)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | pilot state: finished 
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | transexitcode: 0
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | exeerrorcode: 0
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | exeerrordiag: 
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | exitcode: 0
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | exitmsg: OK
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | cpuconsumptiontime: 68241 s
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | nevents: 400
[2026-01-07 14:37:36] 2026-01-07 19:37:01,207 | INFO     | neventsw: 0
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | pid: 904709
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | pgrp: 904709
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | corecount: 12
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | event service: False
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | sizes: {0: 2283743, 1: 2283771, 2: 2283970, 14: 2283970, 23: 2284260, 24: 2284288, 14624: 2315223, 14629: 2324221, 14630: 2324277, 14667: 2324471}
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | --------------------------------------------------
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | 
[2026-01-07 14:37:36] 2026-01-07 19:37:01,208 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-07 14:37:36] 2026-01-07 19:37:01,358 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,358 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,358 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,358 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,369 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 14:37:36] 2026-01-07 19:37:01,369 | INFO     | job 6962012642 has completed (purged errors)
[2026-01-07 14:37:36] 2026-01-07 19:37:01,369 | INFO     | overall cleanup function is called
[2026-01-07 14:37:36] 2026-01-07 19:37:02,387 | INFO     | --- collectZombieJob: --- 10, [904709]
[2026-01-07 14:37:36] 2026-01-07 19:37:02,387 | INFO     | zombie collector waiting for pid 904709
[2026-01-07 14:37:36] 2026-01-07 19:37:02,387 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 14:37:36] 2026-01-07 19:37:02,387 | INFO     | collected zombie processes
[2026-01-07 14:37:36] 2026-01-07 19:37:02,387 | INFO     | will attempt to kill all subprocesses of pid=904709
[2026-01-07 14:37:36] 2026-01-07 19:37:02,517 | INFO     | PID=895476 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-07 14:37:36] 2026-01-07 19:37:02,517 | INFO     | .. there are 25 such processes running
[2026-01-07 14:37:36] 2026-01-07 19:37:04,821 | INFO     | process IDs to be killed: [904709] (in reverse order)
[2026-01-07 14:37:36] 2026-01-07 19:37:05,270 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 14:37:36] 2026-01-07 19:37:05,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 14:37:36] 2026-01-07 19:37:05,418 | INFO     | did not find any defunct processes belonging to 904709
[2026-01-07 14:37:36] 2026-01-07 19:37:05,524 | INFO     | did not find any defunct processes belonging to 904709
[2026-01-07 14:37:36] 2026-01-07 19:37:05,525 | INFO     | ready for new job
[2026-01-07 14:37:36] 2026-01-07 19:37:05,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 14:37:36] 2026-01-07 19:37:05,527 | INFO     | ***************************************
[2026-01-07 14:37:36] 2026-01-07 19:37:05,528 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 14:37:36] 2026-01-07 19:37:05,528 | INFO     | ***************************************
[2026-01-07 14:37:36] 2026-01-07 19:37:05,528 | INFO     | 
[2026-01-07 14:37:36] 2026-01-07 19:37:05,533 | INFO     | architecture information:
[2026-01-07 14:37:36] 2026-01-07 19:37:05,534 | INFO     | executing command: cat /etc/os-release
[2026-01-07 14:37:36] 2026-01-07 19:37:05,590 | INFO     | cat /etc/os-release:
[2026-01-07 14:37:36] NAME="CentOS Linux"
[2026-01-07 14:37:36] VERSION="7 (Core)"
[2026-01-07 14:37:36] ID="centos"
[2026-01-07 14:37:36] ID_LIKE="rhel fedora"
[2026-01-07 14:37:36] VERSION_ID="7"
[2026-01-07 14:37:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 14:37:36] ANSI_COLOR="0;31"
[2026-01-07 14:37:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 14:37:36] HOME_URL="https://www.centos.org/"
[2026-01-07 14:37:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 14:37:36] 
[2026-01-07 14:37:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 14:37:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 14:37:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 14:37:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 14:37:36] 
[2026-01-07 14:37:36] 2026-01-07 19:37:05,591 | INFO     | ***************************************
[2026-01-07 14:37:36] 2026-01-07 19:37:06,094 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-07 14:37:36] 2026-01-07 19:37:06,212 | INFO     | sufficient remaining disk space (95498010624 B)
[2026-01-07 14:37:36] 2026-01-07 19:37:06,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 14:37:36] 2026-01-07 19:37:06,214 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 14:37:36] 2026-01-07 19:37:06,214 | INFO     | update_server=False
[2026-01-07 14:37:36] 2026-01-07 19:37:06,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 14:37:36] 2026-01-07 19:37:06,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 14:37:36] 2026-01-07 19:37:06,215 | INFO     | aborting loop
[2026-01-07 14:37:36] 2026-01-07 19:37:06,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 14:37:36] 2026-01-07 19:37:06,329 | INFO     | all data control threads have been joined
[2026-01-07 14:37:36] 2026-01-07 19:37:06,661 | INFO     | all job control threads have been joined
[2026-01-07 14:37:36] 2026-01-07 19:37:06,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 14:37:36] 2026-01-07 19:37:07,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 14:37:36] 2026-01-07 19:37:07,219 | INFO     | [job] retrieve thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,237 | INFO     | [job] job monitor thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,246 | INFO     | [job] queue monitor thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,271 | INFO     | all payload control threads have been joined
[2026-01-07 14:37:36] 2026-01-07 19:37:07,342 | INFO     | [data] control thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,367 | INFO     | [job] validate thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,445 | INFO     | [payload] failed_post thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,590 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,666 | INFO     | [job] control thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,880 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:07,954 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:08,055 | INFO     | [data] copytool_in thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:08,084 | INFO     | [payload] validate_post thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:08,218 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:08,277 | INFO     | [payload] control thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:09,058 | INFO     | [data] copytool_out thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:10,684 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 14:37:36] 2026-01-07 19:37:13,009 | INFO     | [monitor] cgroup control has ended
[2026-01-07 14:37:36] 2026-01-07 19:37:13,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139792058095424)>', '<ExcThread(monitor, started 139791119152896)>']
[2026-01-07 14:37:36] 2026-01-07 19:37:18,764 | INFO     | all workflow threads have been joined
[2026-01-07 14:37:36] 2026-01-07 19:37:18,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 14:37:36] 2026-01-07 19:37:18,765 | INFO     | traces error code: 0
[2026-01-07 14:37:36] 2026-01-07 19:37:18,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 14:37:36] 2026-01-07 19:37:35,468 | INFO     | PID=895476 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-07 14:37:36] 2026-01-07 19:37:35,469 | INFO     | .. there are 25 such processes running
[2026-01-07 14:37:36] 2026-01-07 19:37:35,469 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 14:37:36] 2026-01-07 19:37:35,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 14:37:36] 2026-01-07 19:37:35,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 14:37:36] 2026-01-07 19:37:35,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 14:37:36] 2026-01-07 19:37:35,469 | INFO     | [monitor] control thread has ended
[2026-01-07 14:37:36] 2026-01-07 19:37:35,941 [wrapper] ==== pilot stdout END ====
[2026-01-07 14:37:36] 2026-01-07 19:37:35,949 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 14:37:36] 2026-01-07 19:37:35,977 [wrapper] pilotpid: 895476
[2026-01-07 14:37:36] 2026-01-07 19:37:36,001 [wrapper] Pilot exit status: 0
[2026-01-07 14:37:36] 2026-01-07 19:37:36,153 [wrapper] pandaids: 6962012642
[2026-01-07 14:37:36] 2026-01-07 19:37:36,360 [wrapper] cleanup supervisor_pilot 2353090 895477
[2026-01-07 14:37:36] 2026-01-07 19:37:36,387 [wrapper] Test setup, not cleaning
[2026-01-07 14:37:36] 2026-01-07 19:37:36,415 [wrapper] apfmon messages muted
[2026-01-07 14:37:36] 2026-01-07 19:37:36,431 [wrapper] ==== wrapper stdout END ====
[2026-01-07 14:37:36] 2026-01-07 19:37:36,446 [wrapper] ==== wrapper stderr END ====
[2026-01-07 14:37:36]  *** Error codes and diagnostics ***
[2026-01-07 14:37:37]     "exeErrorCode": 0,
[2026-01-07 14:37:37]     "exeErrorDiag": "",
[2026-01-07 14:37:37]     "pilotErrorCode": 0,
[2026-01-07 14:37:37]     "pilotErrorDiag": "",
[2026-01-07 14:37:37]  *** Listing of results directory ***
[2026-01-07 14:37:37] total 438048
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-07 14:37:37] -rwx------. 1 boincer umatlas     36322 Jan  7 10:28 runpilot2-wrapper.sh
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 10:29 queuedata.json
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas       100 Jan  7 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 14:37:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 10:30 run_atlas
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas       105 Jan  7 10:30 job.xml
[2026-01-07 14:37:37] -rw-r--r--. 2 boincer umatlas 224223596 Jan  7 10:30 EVNT.47898824._000153.pool.root.1
[2026-01-07 14:37:37] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 10:30 start_atlas.sh
[2026-01-07 14:37:37] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 10:30 shared
[2026-01-07 14:37:37] -rw-r--r--. 2 boincer umatlas    592403 Jan  7 10:30 input.tar.gz
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas         0 Jan  7 10:30 boinc_lockfile
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas      2516 Jan  7 10:30 pandaJob.out
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas        57 Jan  7 10:30 setup.sh.local
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas    989408 Jan  7 10:31 agis_schedconf.cvmfs.json
[2026-01-07 14:37:37] drwx------. 5 boincer umatlas      4096 Jan  7 10:31 pilot3
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas 215689062 Jan  7 14:35 HITS.47898826._007868.pool.root.1
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas       531 Jan  7 14:35 boinc_task_state.xml
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas      1043 Jan  7 14:36 memory_monitor_summary.json
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas   1516240 Jan  7 14:36 agis_ddmendpoints.agis.ALL.json
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas    518509 Jan  7 14:36 log.47898826._007868.job.log.tgz.1
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas        95 Jan  7 14:36 pilot_heartbeat.json
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas      7825 Jan  7 14:37 heartbeat.json
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas       822 Jan  7 14:37 pilotlog.txt
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas        28 Jan  7 14:37 wrapper_checkpoint.txt
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas      6659 Jan  7 14:37 init_data.xml
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas   1850769 Jan  7 14:37 log.47898826._007868.job.log.1
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas       357 Jan  7 14:37 output.list
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas      8192 Jan  7 14:37 boinc_mmap_file
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas       620 Jan  7 14:37 runtime_log
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas   2385920 Jan  7 14:37 result.tar.gz
[2026-01-07 14:37:37] -rw-------. 1 boincer umatlas       655 Jan  7 14:37 YwlLDmsdkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo6hKDmfXMzJm.diag
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas      9335 Jan  7 14:37 runtime_log.err
[2026-01-07 14:37:37] -rw-r--r--. 1 boincer umatlas     21491 Jan  7 14:37 stderr.txt
[2026-01-07 14:37:57] HITS file was successfully produced:
[2026-01-07 14:37:57] -rw-------. 1 boincer umatlas 215689062 Jan  7 14:35 shared/HITS.pool.root.1
[2026-01-07 14:37:57]  *** Contents of shared directory: ***
[2026-01-07 14:37:57] total 432540
[2026-01-07 14:37:57] -rw-r--r--. 2 boincer umatlas 224223596 Jan  7 10:30 ATLAS.root_0
[2026-01-07 14:37:57] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 10:30 start_atlas.sh
[2026-01-07 14:37:57] -rw-r--r--. 2 boincer umatlas    592403 Jan  7 10:30 input.tar.gz
[2026-01-07 14:37:57] -rw-------. 1 boincer umatlas 215689062 Jan  7 14:35 HITS.pool.root.1
[2026-01-07 14:37:57] -rw-------. 1 boincer umatlas   2385920 Jan  7 14:37 result.tar.gz
14:37:59 (891348): run_atlas exited; CPU time 68834.112821
14:37:59 (891348): called boinc_finish(0)

</stderr_txt>
]]>

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