Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:31:01 (2942430): wrapper (7.7.26015): starting
10:31:01 (2942430): wrapper: running run_atlas (--nthreads 10)
[2026-01-07 10:31:01] Arguments: --nthreads 10
[2026-01-07 10:31:01] Threads: 10
[2026-01-07 10:31:01] Checking for CVMFS
[2026-01-07 10:31:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 10:31:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 10:31:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 10:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 10:31:05] 2.13.3.0 4282 11136 189384 154872 0 20 35863398 39288833 8564 16776704 0 4407445 99.820 8549013 37182 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-07 10:31:05] CVMFS is ok
[2026-01-07 10:31:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 10:31:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 10:31:05] Further information can be found at the LHC@home message board.
[2026-01-07 10:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 10:31:05] Checking for apptainer binary...
[2026-01-07 10:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 10:31:05] Running /usr/bin/apptainer --version
[2026-01-07 10:31:05] apptainer version 1.4.5-2.el9
[2026-01-07 10:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 10:31:06] c-211-32.aglt2.org
[2026-01-07 10:31:06] apptainer works
[2026-01-07 10:31:06] Set ATHENA_PROC_NUMBER=10
[2026-01-07 10:31:06] Set ATHENA_CORE_NUMBER=10
[2026-01-07 10:31:06] Starting ATLAS job with PandaID=6962015665
[2026-01-07 10:31:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 04:58:54]  *** The last 200 lines of the pilot log: ***
[2026-01-08 04:58:54] 2026-01-08 05:58:20,459 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 04:58:54] 2026-01-08 05:58:20,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 04:58:54] 2026-01-08 05:58:20,463 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 04:58:54] 2026-01-08 05:58:20,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 04:58:54] 2026-01-08 05:58:20,507 | INFO     | fitting pss+swap vs Time
[2026-01-08 04:58:54] 2026-01-08 05:58:20,513 | INFO     | sum of square deviations: 189762082594.55396
[2026-01-08 04:58:54] 2026-01-08 05:58:20,582 | INFO     | sum of deviations: 112234348903.20312
[2026-01-08 04:58:54] 2026-01-08 05:58:20,583 | INFO     | mean x: 1767825955.7467608
[2026-01-08 04:58:54] 2026-01-08 05:58:20,583 | INFO     | mean y: 2583866.800942285
[2026-01-08 04:58:54] 2026-01-08 05:58:20,583 | INFO     | intersect: -1042992743.6821191
[2026-01-08 04:58:54] 2026-01-08 05:58:20,584 | INFO     | chi2: 8.010220468531962
[2026-01-08 04:58:54] 2026-01-08 05:58:20,586 | INFO     | sum of square deviations: 186429305990.25
[2026-01-08 04:58:54] 2026-01-08 05:58:20,659 | INFO     | sum of deviations: 397186077130.75073
[2026-01-08 04:58:54] 2026-01-08 05:58:20,660 | INFO     | mean x: 1767825803.25
[2026-01-08 04:58:54] 2026-01-08 05:58:20,660 | INFO     | mean y: 2596905.441943128
[2026-01-08 04:58:54] 2026-01-08 05:58:20,679 | INFO     | intersect: -3763741182.4126973
[2026-01-08 04:58:54] 2026-01-08 05:58:20,681 | INFO     | chi2: 4.319204423844698
[2026-01-08 04:58:54] 2026-01-08 05:58:20,681 | INFO     | current chi2=4.319204423844698 (change=46.07883215184112 %)
[2026-01-08 04:58:54] 2026-01-08 05:58:20,682 | INFO     | sum of square deviations: 183135425041.4158
[2026-01-08 04:58:54] 2026-01-08 05:58:20,763 | INFO     | sum of deviations: 457133992060.4115
[2026-01-08 04:58:54] 2026-01-08 05:58:20,764 | INFO     | mean x: 1767825650.7449346
[2026-01-08 04:58:54] 2026-01-08 05:58:20,764 | INFO     | mean y: 2599667.567342074
[2026-01-08 04:58:54] 2026-01-08 05:58:20,764 | INFO     | intersect: -4410163165.232859
[2026-01-08 04:58:54] 2026-01-08 05:58:20,792 | INFO     | chi2: 3.474839965598091
[2026-01-08 04:58:54] 2026-01-08 05:58:20,792 | INFO     | current chi2=3.474839965598091 (change=19.54907375036915 %)
[2026-01-08 04:58:54] 2026-01-08 05:58:20,792 | INFO     | right removable region: 838
[2026-01-08 04:58:54] 2026-01-08 05:58:20,793 | INFO     | sum of square deviations: 186429022584.25
[2026-01-08 04:58:54] 2026-01-08 05:58:20,803 | INFO     | monitor loop #2973: job 0:6962015665 is in state 'finished'
[2026-01-08 04:58:54] 2026-01-08 05:58:20,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 04:58:54] 2026-01-08 05:58:20,934 | INFO     | sum of deviations: -131416582048.49995
[2026-01-08 04:58:54] 2026-01-08 05:58:20,934 | INFO     | mean x: 1767826108.25
[2026-01-08 04:58:54] 2026-01-08 05:58:20,934 | INFO     | mean y: 2595007.760663507
[2026-01-08 04:58:54] 2026-01-08 05:58:20,934 | INFO     | intersect: 1248761841.561055
[2026-01-08 04:58:54] 2026-01-08 05:58:20,936 | INFO     | chi2: 5.246984136221049
[2026-01-08 04:58:54] 2026-01-08 05:58:20,963 | INFO     | current chi2=5.246984136221049 (change=34.496383004266214 %)
[2026-01-08 04:58:54] 2026-01-08 05:58:20,965 | INFO     | sum of square deviations: 183135167761.42087
[2026-01-08 04:58:54] 2026-01-08 05:58:21,512 | INFO     | sum of deviations: -222455505432.36353
[2026-01-08 04:58:54] 2026-01-08 05:58:21,619 | INFO     | mean x: 1767826260.7544696
[2026-01-08 04:58:54] 2026-01-08 05:58:21,620 | INFO     | mean y: 2599217.430274136
[2026-01-08 04:58:54] 2026-01-08 05:58:21,620 | INFO     | intersect: 2149989525.6918926
[2026-01-08 04:58:54] 2026-01-08 05:58:21,701 | INFO     | chi2: 4.811072150209279
[2026-01-08 04:58:54] 2026-01-08 05:58:21,702 | INFO     | current chi2=4.811072150209279 (change=8.3078578988371 %)
[2026-01-08 04:58:54] 2026-01-08 05:58:21,702 | INFO     | left removable region: 20
[2026-01-08 04:58:54] 2026-01-08 05:58:21,703 | INFO     | sum of square deviations: 169725008650.57343
[2026-01-08 04:58:54] 2026-01-08 05:58:21,925 | INFO     | sum of deviations: 83862621865.60991
[2026-01-08 04:58:54] 2026-01-08 05:58:22,107 | INFO     | mean x: 1767826230.2579463
[2026-01-08 04:58:54] 2026-01-08 05:58:22,108 | INFO     | mean y: 2617243.6369193154
[2026-01-08 04:58:54] 2026-01-08 05:58:22,108 | INFO     | intersect: -870881269.3456452
[2026-01-08 04:58:54] 2026-01-08 05:58:22,109 | INFO     | chi2: 0.16692881351406433
[2026-01-08 04:58:54] 2026-01-08 05:58:22,110 | INFO     | current memory leak: 0.49 B/s (using 818 data points, chi2=0.17)
[2026-01-08 04:58:54] 2026-01-08 05:58:22,111 | INFO     | could have reported an average CPU frequency of 2899 MHz (32 samples)
[2026-01-08 04:58:54] 2026-01-08 05:58:22,160 | INFO     | ..............................
[2026-01-08 04:58:54] 2026-01-08 05:58:22,160 | INFO     | . Timing measurements:
[2026-01-08 04:58:54] 2026-01-08 05:58:22,160 | INFO     | . get job = 0 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | . initial setup = 6 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | . payload setup = 55 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | . stage-in = 0 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | . payload execution = 51766 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | . stage-out = 13 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | . log creation = 1 s
[2026-01-08 04:58:54] 2026-01-08 05:58:22,161 | INFO     | ..............................
[2026-01-08 04:58:54] 2026-01-08 05:58:22,927 | INFO     | PID=2946617 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 04:58:54] 2026-01-08 05:58:22,927 | INFO     | .. there are 8 such processes running
[2026-01-08 04:58:54] 2026-01-08 05:58:23,080 | INFO     | 
[2026-01-08 04:58:54] 2026-01-08 05:58:23,104 | INFO     | job summary report
[2026-01-08 04:58:54] 2026-01-08 05:58:23,105 | INFO     | --------------------------------------------------
[2026-01-08 04:58:54] 2026-01-08 05:58:23,105 | INFO     | PanDA job id: 6962015665
[2026-01-08 04:58:54] 2026-01-08 05:58:23,105 | INFO     | task id: 47898826
[2026-01-08 04:58:54] 2026-01-08 05:58:23,105 | INFO     | errors: (none)
[2026-01-08 04:58:54] 2026-01-08 05:58:23,105 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 04:58:54] 2026-01-08 05:58:23,105 | INFO     | pilot state: finished 
[2026-01-08 04:58:54] 2026-01-08 05:58:23,106 | INFO     | transexitcode: 0
[2026-01-08 04:58:54] 2026-01-08 05:58:23,106 | INFO     | exeerrorcode: 0
[2026-01-08 04:58:54] 2026-01-08 05:58:23,106 | INFO     | exeerrordiag: 
[2026-01-08 04:58:54] 2026-01-08 05:58:23,106 | INFO     | exitcode: 0
[2026-01-08 04:58:54] 2026-01-08 05:58:23,106 | INFO     | exitmsg: OK
[2026-01-08 04:58:54] 2026-01-08 05:58:23,106 | INFO     | cpuconsumptiontime: 110575 s
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | nevents: 400
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | neventsw: 0
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | pid: 2953895
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | pgrp: 2953895
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | corecount: 10
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | event service: False
[2026-01-08 04:58:54] 2026-01-08 05:58:23,107 | INFO     | sizes: {0: 2283134, 1: 2283735, 2: 2283847, 3: 2283847, 4: 2284074, 15: 2284074, 27: 2284230, 34: 2284520, 39: 2284548, 51827: 2332225, 51841: 2341223, 51844: 2341
[2026-01-08 04:58:54] 2026-01-08 05:58:23,108 | INFO     | --------------------------------------------------
[2026-01-08 04:58:54] 2026-01-08 05:58:23,108 | INFO     | 
[2026-01-08 04:58:54] 2026-01-08 05:58:23,127 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 04:58:54] 2026-01-08 05:58:23,227 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,228 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,228 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,228 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,231 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 04:58:54] 2026-01-08 05:58:23,231 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,231 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 04:58:54] 2026-01-08 05:58:23,235 | INFO     | job 6962015665 has completed (purged errors)
[2026-01-08 04:58:54] 2026-01-08 05:58:23,236 | INFO     | overall cleanup function is called
[2026-01-08 04:58:54] 2026-01-08 05:58:24,245 | INFO     | --- collectZombieJob: --- 10, [2953895]
[2026-01-08 04:58:54] 2026-01-08 05:58:24,245 | INFO     | zombie collector waiting for pid 2953895
[2026-01-08 04:58:54] 2026-01-08 05:58:24,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 04:58:54] 2026-01-08 05:58:24,246 | INFO     | collected zombie processes
[2026-01-08 04:58:54] 2026-01-08 05:58:24,246 | INFO     | will attempt to kill all subprocesses of pid=2953895
[2026-01-08 04:58:54] 2026-01-08 05:58:24,964 | INFO     | process IDs to be killed: [2953895] (in reverse order)
[2026-01-08 04:58:54] 2026-01-08 05:58:25,130 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 04:58:54] 2026-01-08 05:58:25,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 04:58:54] 2026-01-08 05:58:25,150 | INFO     | did not find any defunct processes belonging to 2953895
[2026-01-08 04:58:54] 2026-01-08 05:58:25,186 | INFO     | did not find any defunct processes belonging to 2953895
[2026-01-08 04:58:54] 2026-01-08 05:58:25,187 | INFO     | ready for new job
[2026-01-08 04:58:54] 2026-01-08 05:58:25,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 04:58:54] 2026-01-08 05:58:25,199 | INFO     | ***************************************
[2026-01-08 04:58:54] 2026-01-08 05:58:25,199 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 04:58:54] 2026-01-08 05:58:25,200 | INFO     | ***************************************
[2026-01-08 04:58:54] 2026-01-08 05:58:25,200 | INFO     | 
[2026-01-08 04:58:54] 2026-01-08 05:58:25,210 | INFO     | architecture information:
[2026-01-08 04:58:54] 2026-01-08 05:58:25,214 | INFO     | executing command: cat /etc/os-release
[2026-01-08 04:58:54] 2026-01-08 05:58:25,268 | INFO     | cat /etc/os-release:
[2026-01-08 04:58:54] NAME="CentOS Linux"
[2026-01-08 04:58:54] VERSION="7 (Core)"
[2026-01-08 04:58:54] ID="centos"
[2026-01-08 04:58:54] ID_LIKE="rhel fedora"
[2026-01-08 04:58:54] VERSION_ID="7"
[2026-01-08 04:58:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 04:58:54] ANSI_COLOR="0;31"
[2026-01-08 04:58:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 04:58:54] HOME_URL="https://www.centos.org/"
[2026-01-08 04:58:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 04:58:54] 
[2026-01-08 04:58:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 04:58:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 04:58:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 04:58:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 04:58:54] 
[2026-01-08 04:58:54] 2026-01-08 05:58:25,269 | INFO     | ***************************************
[2026-01-08 04:58:54] 2026-01-08 05:58:25,772 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 04:58:54] 2026-01-08 05:58:25,862 | INFO     | sufficient remaining disk space (52798947328 B)
[2026-01-08 04:58:54] 2026-01-08 05:58:25,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 04:58:54] 2026-01-08 05:58:25,862 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 04:58:54] 2026-01-08 05:58:25,862 | INFO     | update_server=False
[2026-01-08 04:58:54] 2026-01-08 05:58:25,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 04:58:54] 2026-01-08 05:58:25,906 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 04:58:54] 2026-01-08 05:58:25,906 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 04:58:54] 2026-01-08 05:58:25,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 04:58:54] 2026-01-08 05:58:25,907 | INFO     | will abort loop
[2026-01-08 04:58:54] 2026-01-08 05:58:25,989 | INFO     | all data control threads have been joined
[2026-01-08 04:58:54] 2026-01-08 05:58:26,106 | INFO     | all payload control threads have been joined
[2026-01-08 04:58:54] 2026-01-08 05:58:26,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 04:58:54] 2026-01-08 05:58:26,820 | INFO     | all job control threads have been joined
[2026-01-08 04:58:54] 2026-01-08 05:58:26,868 | INFO     | [job] retrieve thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:26,913 | INFO     | [job] job monitor thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:27,042 | INFO     | [data] control thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:27,161 | INFO     | [payload] control thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:27,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 04:58:54] 2026-01-08 05:58:27,538 | INFO     | [payload] failed_post thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:27,826 | INFO     | [job] control thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:27,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 04:58:54] 2026-01-08 05:58:28,035 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,124 | INFO     | [job] validate thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,149 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,153 | INFO     | [data] copytool_in thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,322 | INFO     | [payload] validate_post thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,348 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,357 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,603 | INFO     | [data] copytool_out thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:28,948 | INFO     | [job] queue monitor thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:31,199 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 04:58:54] 2026-01-08 05:58:48,279 | INFO     | [monitor] cgroup control has ended
[2026-01-08 04:58:54] 2026-01-08 05:58:49,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139674312812352)>', '<ExcThread(monitor, started 139673938683648)>']
[2026-01-08 04:58:54] 2026-01-08 05:58:54,699 | INFO     | all workflow threads have been joined
[2026-01-08 04:58:54] 2026-01-08 05:58:54,699 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 04:58:54] 2026-01-08 05:58:54,700 | INFO     | traces error code: 0
[2026-01-08 04:58:54] 2026-01-08 05:58:54,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 04:58:54] 2026-01-08 05:58:59,190 | INFO     | PID=2946617 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 04:58:54] 2026-01-08 05:58:59,190 | INFO     | .. there are 8 such processes running
[2026-01-08 04:58:54] 2026-01-08 05:58:59,191 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 04:58:54] 2026-01-08 05:58:59,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 04:58:54] 2026-01-08 05:58:59,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 04:58:54] 2026-01-08 05:58:59,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 04:58:54] 2026-01-08 05:58:59,192 | INFO     | [monitor] control thread has ended
[2026-01-08 04:58:54] 2026-01-08 05:59:00,567 [wrapper] ==== pilot stdout END ====
[2026-01-08 04:58:54] 2026-01-08 05:59:00,601 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 04:58:54] 2026-01-08 05:59:00,616 [wrapper] pilotpid: 2946617
[2026-01-08 04:58:54] 2026-01-08 05:59:00,624 [wrapper] Pilot exit status: 0
[2026-01-08 04:58:54] 2026-01-08 05:59:00,799 [wrapper] pandaids: 6962015665
[2026-01-08 04:58:54] 2026-01-08 05:59:01,002 [wrapper] cleanup supervisor_pilot 4190734 2946618
[2026-01-08 04:58:54] 2026-01-08 05:59:01,060 [wrapper] Test setup, not cleaning
[2026-01-08 04:58:54] 2026-01-08 05:59:01,140 [wrapper] apfmon messages muted
[2026-01-08 04:58:54] 2026-01-08 05:59:01,248 [wrapper] ==== wrapper stdout END ====
[2026-01-08 04:58:54] 2026-01-08 05:59:01,295 [wrapper] ==== wrapper stderr END ====
[2026-01-08 04:58:54]  *** Error codes and diagnostics ***
[2026-01-08 04:58:54]     "exeErrorCode": 0,
[2026-01-08 04:58:54]     "exeErrorDiag": "",
[2026-01-08 04:58:54]     "pilotErrorCode": 0,
[2026-01-08 04:58:54]     "pilotErrorDiag": "",
[2026-01-08 04:58:54]  *** Listing of results directory ***
[2026-01-08 04:58:54] total 450608
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 10:27 queuedata.json
[2026-01-08 04:58:54] -rwx------. 1 boincer umatlas     36322 Jan  7 10:28 runpilot2-wrapper.sh
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas       100 Jan  7 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 04:58:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 10:31 run_atlas
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas       105 Jan  7 10:31 job.xml
[2026-01-08 04:58:54] -rw-r--r--. 2 boincer umatlas 222406720 Jan  7 10:31 EVNT.47898824._000375.pool.root.1
[2026-01-08 04:58:54] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 10:31 start_atlas.sh
[2026-01-08 04:58:54] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 10:31 shared
[2026-01-08 04:58:54] -rw-r--r--. 2 boincer umatlas    592396 Jan  7 10:31 input.tar.gz
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas         0 Jan  7 10:31 boinc_lockfile
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 10:31 pandaJob.out
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas        57 Jan  7 10:31 setup.sh.local
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas    989408 Jan  7 10:32 agis_schedconf.cvmfs.json
[2026-01-08 04:58:54] drwx------. 5 boincer umatlas      4096 Jan  7 10:32 pilot3
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas 220724265 Jan  8 00:51 HITS.47898826._008932.pool.root.1
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas       532 Jan  8 00:51 boinc_task_state.xml
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas      1041 Jan  8 00:57 memory_monitor_summary.json
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas   1516240 Jan  8 00:57 agis_ddmendpoints.agis.ALL.json
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas    936061 Jan  8 00:57 log.47898826._008932.job.log.tgz.1
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas      7825 Jan  8 00:58 heartbeat.json
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas        95 Jan  8 00:58 pilot_heartbeat.json
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas       822 Jan  8 00:58 pilotlog.txt
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas   6256559 Jan  8 00:59 log.47898826._008932.job.log.1
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas       357 Jan  8 00:59 output.list
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas       620 Jan  8 00:59 runtime_log
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas   7208960 Jan  8 00:59 result.tar.gz
[2026-01-08 04:58:54] -rw-------. 1 boincer umatlas       660 Jan  8 00:59 tKFLDmYdkx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf5hKDmvHC5Xm.diag
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas      9345 Jan  8 00:59 runtime_log.err
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas      6524 Jan  8 04:58 init_data.xml
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 04:58 boinc_mmap_file
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas        29 Jan  8 04:58 wrapper_checkpoint.txt
[2026-01-08 04:58:54] -rw-r--r--. 1 boincer umatlas     21280 Jan  8 04:58 stderr.txt
[2026-01-08 04:58:55] HITS file was successfully produced:
[2026-01-08 04:58:55] -rw-------. 1 boincer umatlas 220724265 Jan  8 00:51 shared/HITS.pool.root.1
[2026-01-08 04:58:55]  *** Contents of shared directory: ***
[2026-01-08 04:58:55] total 440388
[2026-01-08 04:58:55] -rw-r--r--. 2 boincer umatlas 222406720 Jan  7 10:31 ATLAS.root_0
[2026-01-08 04:58:55] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 10:31 start_atlas.sh
[2026-01-08 04:58:55] -rw-r--r--. 2 boincer umatlas    592396 Jan  7 10:31 input.tar.gz
[2026-01-08 04:58:55] -rw-------. 1 boincer umatlas 220724265 Jan  8 00:51 HITS.pool.root.1
[2026-01-08 04:58:55] -rw-------. 1 boincer umatlas   7208960 Jan  8 00:59 result.tar.gz
04:58:56 (2942430): run_atlas exited; CPU time 112083.511828
04:58:56 (2942430): called boinc_finish(0)

</stderr_txt>
]]>

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