Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:45:38 (385257): wrapper (7.7.26015): starting
09:45:38 (385257): wrapper: running run_atlas (--nthreads 9)
[2026-01-07 09:45:38] Arguments: --nthreads 9
[2026-01-07 09:45:38] Threads: 9
[2026-01-07 09:45:38] Checking for CVMFS
[2026-01-07 09:45:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 09:45:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 09:45:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 09:45:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 09:45:41] 2.13.3.0 12257 90618 677340 154870 0 527 18409942 32935937 24658 16776704 0 615343023 99.724 418832436 23520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 09:45:41] CVMFS is ok
[2026-01-07 09:45:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 09:45:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 09:45:41] Further information can be found at the LHC@home message board.
[2026-01-07 09:45:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 09:45:41] Checking for apptainer binary...
[2026-01-07 09:45:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 09:45:41] Running /usr/bin/apptainer --version
[2026-01-07 09:45:41] apptainer version 1.4.5-2.el9
[2026-01-07 09:45:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 09:45:42] c-1-3.aglt2.org
[2026-01-07 09:45:42] apptainer works
[2026-01-07 09:45:43] Set ATHENA_PROC_NUMBER=9
[2026-01-07 09:45:43] Set ATHENA_CORE_NUMBER=9
[2026-01-07 09:45:43] Starting ATLAS job with PandaID=6961933629
[2026-01-07 09:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 23:32:52]  *** The last 200 lines of the pilot log: ***
[2026-01-07 23:32:52] 2026-01-08 04:31:21,286 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 1650.0010249999996
[2026-01-07 23:32:52] 2026-01-08 04:31:21,435 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6961933629/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,436 | INFO     | extracted standard info from prmon json
[2026-01-07 23:32:52] 2026-01-08 04:31:21,436 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 23:32:52] 2026-01-08 04:31:21,436 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 23:32:52] 2026-01-08 04:31:21,437 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 23:32:52] 2026-01-08 04:31:21,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 23:32:52] 2026-01-08 04:31:21,513 | INFO     | fitting pss+swap vs Time
[2026-01-07 23:32:52] 2026-01-08 04:31:21,515 | INFO     | sum of square deviations: 163572132432.29504
[2026-01-07 23:32:52] 2026-01-08 04:31:21,549 | INFO     | sum of deviations: 327581096415.5882
[2026-01-07 23:32:52] 2026-01-08 04:31:21,549 | INFO     | mean x: 1767821948.884901
[2026-01-07 23:32:52] 2026-01-08 04:31:21,549 | INFO     | mean y: 2563504.285891089
[2026-01-07 23:32:52] 2026-01-08 04:31:21,549 | INFO     | intersect: -3537801493.5413404
[2026-01-07 23:32:52] 2026-01-08 04:31:21,552 | INFO     | chi2: 3.9035921640645985
[2026-01-07 23:32:52] 2026-01-08 04:31:21,553 | INFO     | sum of square deviations: 160554249112.09464
[2026-01-07 23:32:52] 2026-01-08 04:31:21,598 | INFO     | sum of deviations: 431332616847.7469
[2026-01-07 23:32:52] 2026-01-08 04:31:21,598 | INFO     | mean x: 1767821796.3848069
[2026-01-07 23:32:52] 2026-01-08 04:31:21,599 | INFO     | mean y: 2568727.1432129513
[2026-01-07 23:32:52] 2026-01-08 04:31:21,599 | INFO     | intersect: -4746724460.499384
[2026-01-07 23:32:52] 2026-01-08 04:31:21,600 | INFO     | chi2: 2.500020671244646
[2026-01-07 23:32:52] 2026-01-08 04:31:21,601 | INFO     | current chi2=2.500020671244646 (change=35.95589482274423 %)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,603 | INFO     | sum of square deviations: 157573813053.84958
[2026-01-07 23:32:52] 2026-01-08 04:31:21,625 | INFO     | sum of deviations: 428281789731.2861
[2026-01-07 23:32:52] 2026-01-08 04:31:21,625 | INFO     | mean x: 1767821643.887218
[2026-01-07 23:32:52] 2026-01-08 04:31:21,625 | INFO     | mean y: 2568571.0476190476
[2026-01-07 23:32:52] 2026-01-08 04:31:21,626 | INFO     | intersect: -4802327641.694155
[2026-01-07 23:32:52] 2026-01-08 04:31:21,627 | INFO     | chi2: 2.499662918008647
[2026-01-07 23:32:52] 2026-01-08 04:31:21,627 | INFO     | current chi2=2.499662918008647 (change=0.014310011117666511 %)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,628 | INFO     | right removable region: 797
[2026-01-07 23:32:52] 2026-01-08 04:31:21,629 | INFO     | sum of square deviations: 160554157736.54984
[2026-01-07 23:32:52] 2026-01-08 04:31:21,650 | INFO     | sum of deviations: 132203740224.32884
[2026-01-07 23:32:52] 2026-01-08 04:31:21,650 | INFO     | mean x: 1767822101.3872976
[2026-01-07 23:32:52] 2026-01-08 04:31:21,651 | INFO     | mean y: 2573362.5616438356
[2026-01-07 23:32:52] 2026-01-08 04:31:21,651 | INFO     | intersect: -1453089306.9665287
[2026-01-07 23:32:52] 2026-01-08 04:31:21,662 | INFO     | chi2: 1.6569341552311898
[2026-01-07 23:32:52] 2026-01-08 04:31:21,662 | INFO     | current chi2=1.6569341552311898 (change=57.553604844161946 %)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,663 | INFO     | sum of square deviations: 157573532578.2958
[2026-01-07 23:32:52] 2026-01-08 04:31:21,732 | INFO     | sum of deviations: 79583593137.66644
[2026-01-07 23:32:52] 2026-01-08 04:31:21,732 | INFO     | mean x: 1767822253.8897243
[2026-01-07 23:32:52] 2026-01-08 04:31:21,732 | INFO     | mean y: 2576052.1666666665
[2026-01-07 23:32:52] 2026-01-08 04:31:21,732 | INFO     | intersect: -890274699.4236476
[2026-01-07 23:32:52] 2026-01-08 04:31:21,734 | INFO     | chi2: 1.517964310270869
[2026-01-07 23:32:52] 2026-01-08 04:31:21,734 | INFO     | current chi2=1.517964310270869 (change=8.387167620485828 %)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,734 | INFO     | left removable region: 20
[2026-01-07 23:32:52] 2026-01-08 04:31:21,743 | INFO     | sum of square deviations: 145457932385.27658
[2026-01-07 23:32:52] 2026-01-08 04:31:21,797 | INFO     | sum of deviations: 120352694093.01024
[2026-01-07 23:32:52] 2026-01-08 04:31:21,798 | INFO     | mean x: 1767822223.3925354
[2026-01-07 23:32:52] 2026-01-08 04:31:21,798 | INFO     | mean y: 2584617.8983268985
[2026-01-07 23:32:52] 2026-01-08 04:31:21,798 | INFO     | intersect: -1460121222.7102191
[2026-01-07 23:32:52] 2026-01-08 04:31:21,800 | INFO     | chi2: 0.010135964237146956
[2026-01-07 23:32:52] 2026-01-08 04:31:21,812 | INFO     | current memory leak: 0.83 B/s (using 777 data points, chi2=0.01)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,813 | INFO     | could have reported an average CPU frequency of 1698 MHz (30 samples)
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | ..............................
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . Timing measurements:
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . get job = 0 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . initial setup = 5 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . payload setup = 36 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . stage-in = 0 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . payload execution = 49320 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,814 | INFO     | . stage-out = 12 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,815 | INFO     | . log creation = 1 s
[2026-01-07 23:32:52] 2026-01-08 04:31:21,829 | INFO     | ..............................
[2026-01-07 23:32:52] 2026-01-08 04:31:22,237 | INFO     | time since job start (49479s) is within the limit (174528.0s)
[2026-01-07 23:32:52] 2026-01-08 04:31:24,209 | INFO     | 
[2026-01-07 23:32:52] 2026-01-08 04:31:24,209 | INFO     | job summary report
[2026-01-07 23:32:52] 2026-01-08 04:31:24,209 | INFO     | --------------------------------------------------
[2026-01-07 23:32:52] 2026-01-08 04:31:24,209 | INFO     | PanDA job id: 6961933629
[2026-01-07 23:32:52] 2026-01-08 04:31:24,209 | INFO     | task id: 47898826
[2026-01-07 23:32:52] 2026-01-08 04:31:24,209 | INFO     | errors: (none)
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | pilot state: finished 
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | transexitcode: 0
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | exeerrorcode: 0
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | exeerrordiag: 
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | exitcode: 0
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | exitmsg: OK
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | cpuconsumptiontime: 95262 s
[2026-01-07 23:32:52] 2026-01-08 04:31:24,210 | INFO     | nevents: 400
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | neventsw: 0
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | pid: 454030
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | pgrp: 454030
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | corecount: 9
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | event service: False
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | sizes: {0: 2283741, 1: 2283940, 12: 2283940, 24: 2283968, 28: 2284258, 34: 2284286, 49360: 2328932, 49362: 2328931, 49376: 2337985, 49381: 2338041, 49421: 2338235}
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | --------------------------------------------------
[2026-01-07 23:32:52] 2026-01-08 04:31:24,211 | INFO     | 
[2026-01-07 23:32:52] 2026-01-08 04:31:24,212 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-07 23:32:52] 2026-01-08 04:31:24,276 | INFO     | time since job start (49481s) is within the limit (174528.0s)
[2026-01-07 23:32:52] 2026-01-08 04:31:24,417 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,417 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,417 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,418 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 23:32:52] 2026-01-08 04:31:24,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,420 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 23:32:52] 2026-01-08 04:31:24,420 | INFO     | job 6961933629 has completed (purged errors)
[2026-01-07 23:32:52] 2026-01-08 04:31:24,420 | INFO     | overall cleanup function is called
[2026-01-07 23:32:52] 2026-01-08 04:31:25,500 | INFO     | --- collectZombieJob: --- 10, [454030]
[2026-01-07 23:32:52] 2026-01-08 04:31:25,500 | INFO     | zombie collector waiting for pid 454030
[2026-01-07 23:32:52] 2026-01-08 04:31:25,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 23:32:52] 2026-01-08 04:31:25,500 | INFO     | collected zombie processes
[2026-01-07 23:32:52] 2026-01-08 04:31:25,501 | INFO     | will attempt to kill all subprocesses of pid=454030
[2026-01-07 23:32:52] 2026-01-08 04:31:28,424 | INFO     | process IDs to be killed: [454030] (in reverse order)
[2026-01-07 23:32:52] 2026-01-08 04:31:28,795 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 23:32:52] 2026-01-08 04:31:28,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 23:32:52] 2026-01-08 04:31:29,038 | INFO     | did not find any defunct processes belonging to 454030
[2026-01-07 23:32:52] 2026-01-08 04:31:29,219 | INFO     | did not find any defunct processes belonging to 454030
[2026-01-07 23:32:52] 2026-01-08 04:31:29,219 | INFO     | ready for new job
[2026-01-07 23:32:52] 2026-01-08 04:31:29,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 23:32:52] 2026-01-08 04:31:29,235 | INFO     | ***************************************
[2026-01-07 23:32:52] 2026-01-08 04:31:29,237 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 23:32:52] 2026-01-08 04:31:29,237 | INFO     | ***************************************
[2026-01-07 23:32:52] 2026-01-08 04:31:29,237 | INFO     | 
[2026-01-07 23:32:52] 2026-01-08 04:31:29,258 | INFO     | architecture information:
[2026-01-07 23:32:52] 2026-01-08 04:31:29,295 | INFO     | executing command: cat /etc/os-release
[2026-01-07 23:32:52] 2026-01-08 04:31:29,432 | INFO     | cat /etc/os-release:
[2026-01-07 23:32:52] NAME="CentOS Linux"
[2026-01-07 23:32:52] VERSION="7 (Core)"
[2026-01-07 23:32:52] ID="centos"
[2026-01-07 23:32:52] ID_LIKE="rhel fedora"
[2026-01-07 23:32:52] VERSION_ID="7"
[2026-01-07 23:32:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 23:32:52] ANSI_COLOR="0;31"
[2026-01-07 23:32:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 23:32:52] HOME_URL="https://www.centos.org/"
[2026-01-07 23:32:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 23:32:52] 
[2026-01-07 23:32:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 23:32:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 23:32:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 23:32:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 23:32:52] 
[2026-01-07 23:32:52] 2026-01-08 04:31:29,432 | INFO     | ***************************************
[2026-01-07 23:32:52] 2026-01-08 04:31:29,943 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-07 23:32:52] 2026-01-08 04:31:30,097 | INFO     | sufficient remaining disk space (73729572864 B)
[2026-01-07 23:32:52] 2026-01-08 04:31:30,098 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 23:32:52] 2026-01-08 04:31:30,098 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 23:32:52] 2026-01-08 04:31:30,098 | INFO     | update_server=False
[2026-01-07 23:32:52] 2026-01-08 04:31:30,098 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 23:32:52] 2026-01-08 04:31:30,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 23:32:52] 2026-01-08 04:31:30,163 | INFO     | all data control threads have been joined
[2026-01-07 23:32:52] 2026-01-08 04:31:30,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 23:32:52] 2026-01-08 04:31:30,648 | INFO     | aborting loop
[2026-01-07 23:32:52] 2026-01-08 04:31:30,792 | INFO     | all job control threads have been joined
[2026-01-07 23:32:52] 2026-01-08 04:31:31,105 | INFO     | [job] retrieve thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:31,176 | INFO     | [data] control thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:31,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 23:32:52] 2026-01-08 04:31:31,519 | INFO     | all payload control threads have been joined
[2026-01-07 23:32:52] 2026-01-08 04:31:31,655 | INFO     | [job] job monitor thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:31,798 | INFO     | [job] control thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,056 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,106 | INFO     | [data] copytool_out thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,205 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,209 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,213 | INFO     | [job] validate thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,435 | INFO     | [data] copytool_in thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,504 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,525 | INFO     | [payload] control thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,546 | INFO     | [payload] failed_post thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:32,624 | INFO     | [payload] validate_post thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:33,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 23:32:52] 2026-01-08 04:31:34,059 | INFO     | [job] queue monitor thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:35,456 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 23:32:52] 2026-01-08 04:31:41,838 [wrapper] supervise_pilot (15 min periods counter: 56)
[2026-01-07 23:32:52] 2026-01-08 04:32:00,400 | INFO     | PID=407034 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-07 23:32:52] 2026-01-08 04:32:00,401 | INFO     | .. there are 55 such processes running
[2026-01-07 23:32:52] 2026-01-08 04:32:00,401 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 23:32:52] 2026-01-08 04:32:00,401 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 23:32:52] 2026-01-08 04:32:00,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 23:32:52] 2026-01-08 04:32:21,712 | INFO     | [monitor] cgroup control has ended
[2026-01-07 23:32:52] 2026-01-08 04:32:23,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360400463680)>', '<ExcThread(monitor, started 140359891920640)>']
[2026-01-07 23:32:52] 2026-01-08 04:32:24,661 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 23:32:52] 2026-01-08 04:32:24,661 | INFO     | [monitor] control thread has ended
[2026-01-07 23:32:52] 2026-01-08 04:32:28,803 | INFO     | all workflow threads have been joined
[2026-01-07 23:32:52] 2026-01-08 04:32:28,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 23:32:52] 2026-01-08 04:32:28,803 | INFO     | traces error code: 0
[2026-01-07 23:32:52] 2026-01-08 04:32:28,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 23:32:52] 2026-01-08 04:32:31,071 [wrapper] ==== pilot stdout END ====
[2026-01-07 23:32:52] 2026-01-08 04:32:31,119 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 23:32:52] 2026-01-08 04:32:31,157 [wrapper] pilotpid: 407034
[2026-01-07 23:32:52] 2026-01-08 04:32:31,184 [wrapper] Pilot exit status: 0
[2026-01-07 23:32:52] 2026-01-08 04:32:31,315 [wrapper] pandaids: 6961933629
[2026-01-07 23:32:52] 2026-01-08 04:32:31,537 [wrapper] cleanup supervisor_pilot  506751 407035
[2026-01-07 23:32:52] 2026-01-08 04:32:31,551 [wrapper] Test setup, not cleaning
[2026-01-07 23:32:52] 2026-01-08 04:32:31,606 [wrapper] apfmon messages muted
[2026-01-07 23:32:52] 2026-01-08 04:32:31,634 [wrapper] ==== wrapper stdout END ====
[2026-01-07 23:32:52] 2026-01-08 04:32:31,682 [wrapper] ==== wrapper stderr END ====
[2026-01-07 23:32:52]  *** Error codes and diagnostics ***
[2026-01-07 23:32:52]     "exeErrorCode": 0,
[2026-01-07 23:32:52]     "exeErrorDiag": "",
[2026-01-07 23:32:52]     "pilotErrorCode": 0,
[2026-01-07 23:32:52]     "pilotErrorDiag": "",
[2026-01-07 23:32:52]  *** Listing of results directory ***
[2026-01-07 23:32:52] total 447764
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 08:00 pilot3.tar.gz
[2026-01-07 23:32:52] -rwx------. 1 boincer umatlas     36322 Jan  7 08:04 runpilot2-wrapper.sh
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 08:05 queuedata.json
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas       100 Jan  7 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 23:32:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 09:45 run_atlas
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas       105 Jan  7 09:45 job.xml
[2026-01-07 23:32:52] -rw-r--r--. 2 boincer umatlas 226277435 Jan  7 09:45 EVNT.47898824._000113.pool.root.1
[2026-01-07 23:32:52] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 09:45 start_atlas.sh
[2026-01-07 23:32:52] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 09:45 shared
[2026-01-07 23:32:52] -rw-r--r--. 2 boincer umatlas    592394 Jan  7 09:45 input.tar.gz
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas         0 Jan  7 09:45 boinc_lockfile
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 09:45 pandaJob.out
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas        57 Jan  7 09:45 setup.sh.local
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas    989079 Jan  7 09:46 agis_schedconf.cvmfs.json
[2026-01-07 23:32:52] drwx------. 5 boincer umatlas      4096 Jan  7 09:46 pilot3
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas 217433878 Jan  7 23:27 HITS.47898826._007235.pool.root.1
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas       532 Jan  7 23:27 boinc_task_state.xml
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas      6838 Jan  7 23:28 init_data.xml
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas      1045 Jan  7 23:30 memory_monitor_summary.json
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas   1516240 Jan  7 23:30 agis_ddmendpoints.agis.ALL.json
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas    800741 Jan  7 23:30 log.47898826._007235.job.log.tgz.1
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas        95 Jan  7 23:31 pilot_heartbeat.json
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas      7820 Jan  7 23:31 heartbeat.json
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas      4823 Jan  7 23:32 pilotlog.txt
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas   4640429 Jan  7 23:32 log.47898826._007235.job.log.1
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas       357 Jan  7 23:32 output.list
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas       620 Jan  7 23:32 runtime_log
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas   5457920 Jan  7 23:32 result.tar.gz
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas      9328 Jan  7 23:32 runtime_log.err
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas       656 Jan  7 23:32 rBoMDmROix8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAzcKDmluQMcm.diag
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas      8192 Jan  7 23:32 boinc_mmap_file
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas        29 Jan  7 23:32 wrapper_checkpoint.txt
[2026-01-07 23:32:52] -rw-r--r--. 1 boincer umatlas     21226 Jan  7 23:32 stderr.txt
[2026-01-07 23:32:52] HITS file was successfully produced:
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas 217433878 Jan  7 23:27 shared/HITS.pool.root.1
[2026-01-07 23:32:52]  *** Contents of shared directory: ***
[2026-01-07 23:32:52] total 439252
[2026-01-07 23:32:52] -rw-r--r--. 2 boincer umatlas 226277435 Jan  7 09:45 ATLAS.root_0
[2026-01-07 23:32:52] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 09:45 start_atlas.sh
[2026-01-07 23:32:52] -rw-r--r--. 2 boincer umatlas    592394 Jan  7 09:45 input.tar.gz
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas 217433878 Jan  7 23:27 HITS.pool.root.1
[2026-01-07 23:32:52] -rw-------. 1 boincer umatlas   5457920 Jan  7 23:32 result.tar.gz
23:32:54 (385257): run_atlas exited; CPU time 98334.225151
23:32:54 (385257): called boinc_finish(0)

</stderr_txt>
]]>

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