Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:45:53 (391360): wrapper (7.7.26015): starting
09:45:53 (391360): wrapper: running run_atlas (--nthreads 9)
[2026-01-07 09:45:53] Arguments: --nthreads 9
[2026-01-07 09:45:53] Threads: 9
[2026-01-07 09:45:53] Checking for CVMFS
[2026-01-07 09:45:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 09:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 09:45:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 09:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 09:45:54] 2.13.3.0 12257 90618 677980 154870 0 528 18414838 32935936 24690 16776704 0 615349498 99.724 418833884 23520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 09:45:54] CVMFS is ok
[2026-01-07 09:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 09:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 09:45:54] Further information can be found at the LHC@home message board.
[2026-01-07 09:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 09:45:54] Checking for apptainer binary...
[2026-01-07 09:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 09:45:54] Running /usr/bin/apptainer --version
[2026-01-07 09:45:55] apptainer version 1.4.5-2.el9
[2026-01-07 09:45:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 09:45:55] c-1-3.aglt2.org
[2026-01-07 09:45:55] apptainer works
[2026-01-07 09:45:55] Set ATHENA_PROC_NUMBER=9
[2026-01-07 09:45:55] Set ATHENA_CORE_NUMBER=9
[2026-01-07 09:45:55] Starting ATLAS job with PandaID=6961933058
[2026-01-07 09:45:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 23:34:56]  *** The last 200 lines of the pilot log: ***
[2026-01-07 23:34:57] 2026-01-08 04:34:14,710 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-07 23:34:57] 2026-01-08 04:34:14,767 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 1714.9751999999996
[2026-01-07 23:34:57] 2026-01-08 04:34:14,919 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6961933058/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 23:34:57] 2026-01-08 04:34:14,934 | INFO     | extracted standard info from prmon json
[2026-01-07 23:34:57] 2026-01-08 04:34:14,934 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 23:34:57] 2026-01-08 04:34:14,935 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 23:34:57] 2026-01-08 04:34:14,935 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 23:34:57] 2026-01-08 04:34:14,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 23:34:57] 2026-01-08 04:34:14,960 | INFO     | fitting pss+swap vs Time
[2026-01-07 23:34:57] 2026-01-08 04:34:14,963 | INFO     | sum of square deviations: 165404445697.15918
[2026-01-07 23:34:57] 2026-01-08 04:34:15,022 | INFO     | sum of deviations: 198273057613.47757
[2026-01-07 23:34:57] 2026-01-08 04:34:15,022 | INFO     | mean x: 1767822048.0591862
[2026-01-07 23:34:57] 2026-01-08 04:34:15,022 | INFO     | mean y: 2548582.1775585697
[2026-01-07 23:34:57] 2026-01-08 04:34:15,023 | INFO     | intersect: -2116569083.0572095
[2026-01-07 23:34:57] 2026-01-08 04:34:15,024 | INFO     | chi2: 4.4947909170537015
[2026-01-07 23:34:57] 2026-01-08 04:34:15,026 | INFO     | sum of square deviations: 162364207920.2726
[2026-01-07 23:34:57] 2026-01-08 04:34:15,056 | INFO     | sum of deviations: 359085040586.66327
[2026-01-07 23:34:57] 2026-01-08 04:34:15,057 | INFO     | mean x: 1767821895.5632753
[2026-01-07 23:34:57] 2026-01-08 04:34:15,057 | INFO     | mean y: 2556628.839950372
[2026-01-07 23:34:57] 2026-01-08 04:34:15,057 | INFO     | intersect: -3907162177.1055226
[2026-01-07 23:34:57] 2026-01-08 04:34:15,059 | INFO     | chi2: 2.2695597934635368
[2026-01-07 23:34:57] 2026-01-08 04:34:15,059 | INFO     | current chi2=2.2695597934635368 (change=49.50688841047995 %)
[2026-01-07 23:34:57] 2026-01-08 04:34:15,061 | INFO     | sum of square deviations: 159361507895.2232
[2026-01-07 23:34:57] 2026-01-08 04:34:15,104 | INFO     | sum of deviations: 355876368746.454
[2026-01-07 23:34:57] 2026-01-08 04:34:15,104 | INFO     | mean x: 1767821743.068664
[2026-01-07 23:34:57] 2026-01-08 04:34:15,105 | INFO     | mean y: 2556465.8826466915
[2026-01-07 23:34:57] 2026-01-08 04:34:15,105 | INFO     | intersect: -3945234884.886573
[2026-01-07 23:34:57] 2026-01-08 04:34:15,107 | INFO     | chi2: 2.269530130830395
[2026-01-07 23:34:57] 2026-01-08 04:34:15,107 | INFO     | current chi2=2.269530130830395 (change=0.0013069773806875327 %)
[2026-01-07 23:34:57] 2026-01-08 04:34:15,107 | INFO     | right removable region: 800
[2026-01-07 23:34:57] 2026-01-08 04:34:15,109 | INFO     | sum of square deviations: 162363782504.015
[2026-01-07 23:34:57] 2026-01-08 04:34:15,370 | INFO     | sum of deviations: 14532358074.362228
[2026-01-07 23:34:57] 2026-01-08 04:34:15,370 | INFO     | mean x: 1767822200.5657568
[2026-01-07 23:34:57] 2026-01-08 04:34:15,371 | INFO     | mean y: 2557782.7667493797
[2026-01-07 23:34:57] 2026-01-08 04:34:15,371 | INFO     | intersect: -155671009.604439
[2026-01-07 23:34:57] 2026-01-08 04:34:15,399 | INFO     | chi2: 2.408067968776407
[2026-01-07 23:34:57] 2026-01-08 04:34:15,400 | INFO     | current chi2=2.408067968776407 (change=46.42536186410923 %)
[2026-01-07 23:34:57] 2026-01-08 04:34:15,401 | INFO     | sum of square deviations: 159360657674.9438
[2026-01-07 23:34:57] 2026-01-08 04:34:15,648 | INFO     | sum of deviations: -33588279429.719063
[2026-01-07 23:34:57] 2026-01-08 04:34:15,648 | INFO     | mean x: 1767822353.071161
[2026-01-07 23:34:57] 2026-01-08 04:34:15,648 | INFO     | mean y: 2560223.9775280897
[2026-01-07 23:34:57] 2026-01-08 04:34:15,649 | INFO     | intersect: 375162295.5513933
[2026-01-07 23:34:57] 2026-01-08 04:34:15,686 | INFO     | chi2: 2.286900839021094
[2026-01-07 23:34:57] 2026-01-08 04:34:15,687 | INFO     | current chi2=2.286900839021094 (change=5.031715521588067 %)
[2026-01-07 23:34:57] 2026-01-08 04:34:15,687 | INFO     | left removable region: 20
[2026-01-07 23:34:57] 2026-01-08 04:34:15,688 | INFO     | sum of square deviations: 147152610354.3538
[2026-01-07 23:34:57] 2026-01-08 04:34:15,849 | INFO     | sum of deviations: 106631926682.12314
[2026-01-07 23:34:57] 2026-01-08 04:34:15,849 | INFO     | mean x: 1767822322.5923078
[2026-01-07 23:34:57] 2026-01-08 04:34:15,849 | INFO     | mean y: 2569283.2205128204
[2026-01-07 23:34:57] 2026-01-08 04:34:15,849 | INFO     | intersect: -1278456583.9778142
[2026-01-07 23:34:57] 2026-01-08 04:34:15,854 | INFO     | chi2: 0.007693104238280207
[2026-01-07 23:34:57] 2026-01-08 04:34:15,855 | INFO     | current memory leak: 0.72 B/s (using 780 data points, chi2=0.01)
[2026-01-07 23:34:57] 2026-01-08 04:34:15,856 | INFO     | could have reported an average CPU frequency of 1694 MHz (30 samples)
[2026-01-07 23:34:57] 2026-01-08 04:34:15,856 | INFO     | ..............................
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . Timing measurements:
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . get job = 0 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . initial setup = 4 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . payload setup = 35 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . stage-in = 0 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . payload execution = 49492 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . stage-out = 10 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,857 | INFO     | . log creation = 2 s
[2026-01-07 23:34:57] 2026-01-08 04:34:15,858 | INFO     | ..............................
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | 
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | job summary report
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | --------------------------------------------------
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | PanDA job id: 6961933058
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | task id: 47898826
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | errors: (none)
[2026-01-07 23:34:57] 2026-01-08 04:34:16,902 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | pilot state: finished 
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | transexitcode: 0
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | exeerrorcode: 0
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | exeerrordiag: 
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | exitcode: 0
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | exitmsg: OK
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | cpuconsumptiontime: 96933 s
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | nevents: 400
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | neventsw: 0
[2026-01-07 23:34:57] 2026-01-08 04:34:16,903 | INFO     | pid: 457681
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | pgrp: 457681
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | corecount: 9
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | event service: False
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | sizes: {0: 2283735, 1: 2283819, 2: 2283847, 3: 2284018, 14: 2284046, 25: 2284074, 27: 2284492, 36: 2284520, 49533: 2328982, 49534: 2328981, 49545: 2338035, 49546: 
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | --------------------------------------------------
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | 
[2026-01-07 23:34:57] 2026-01-08 04:34:16,904 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-07 23:34:57] 2026-01-08 04:34:17,102 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,103 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,103 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,103 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,105 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 23:34:57] 2026-01-08 04:34:17,106 | INFO     | job 6961933058 has completed (purged errors)
[2026-01-07 23:34:57] 2026-01-08 04:34:17,128 | INFO     | overall cleanup function is called
[2026-01-07 23:34:57] 2026-01-08 04:34:18,166 | INFO     | --- collectZombieJob: --- 10, [457681]
[2026-01-07 23:34:57] 2026-01-08 04:34:18,166 | INFO     | zombie collector waiting for pid 457681
[2026-01-07 23:34:57] 2026-01-08 04:34:18,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 23:34:57] 2026-01-08 04:34:18,166 | INFO     | collected zombie processes
[2026-01-07 23:34:57] 2026-01-08 04:34:18,166 | INFO     | will attempt to kill all subprocesses of pid=457681
[2026-01-07 23:34:57] 2026-01-08 04:34:18,753 | INFO     | PID=410199 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-07 23:34:57] 2026-01-08 04:34:18,753 | INFO     | .. there are 54 such processes running
[2026-01-07 23:34:57] 2026-01-08 04:34:20,834 | INFO     | process IDs to be killed: [457681] (in reverse order)
[2026-01-07 23:34:57] 2026-01-08 04:34:21,282 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 23:34:57] 2026-01-08 04:34:21,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 23:34:57] 2026-01-08 04:34:21,455 | INFO     | did not find any defunct processes belonging to 457681
[2026-01-07 23:34:57] 2026-01-08 04:34:21,600 | INFO     | did not find any defunct processes belonging to 457681
[2026-01-07 23:34:57] 2026-01-08 04:34:21,600 | INFO     | ready for new job
[2026-01-07 23:34:57] 2026-01-08 04:34:21,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 23:34:57] 2026-01-08 04:34:21,623 | INFO     | ***************************************
[2026-01-07 23:34:57] 2026-01-08 04:34:21,623 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 23:34:57] 2026-01-08 04:34:21,623 | INFO     | ***************************************
[2026-01-07 23:34:57] 2026-01-08 04:34:21,623 | INFO     | 
[2026-01-07 23:34:57] 2026-01-08 04:34:21,652 | INFO     | architecture information:
[2026-01-07 23:34:57] 2026-01-08 04:34:21,682 | INFO     | executing command: cat /etc/os-release
[2026-01-07 23:34:57] 2026-01-08 04:34:21,775 | INFO     | cat /etc/os-release:
[2026-01-07 23:34:57] NAME="CentOS Linux"
[2026-01-07 23:34:57] VERSION="7 (Core)"
[2026-01-07 23:34:57] ID="centos"
[2026-01-07 23:34:57] ID_LIKE="rhel fedora"
[2026-01-07 23:34:57] VERSION_ID="7"
[2026-01-07 23:34:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 23:34:57] ANSI_COLOR="0;31"
[2026-01-07 23:34:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 23:34:57] HOME_URL="https://www.centos.org/"
[2026-01-07 23:34:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 23:34:57] 
[2026-01-07 23:34:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 23:34:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 23:34:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 23:34:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 23:34:57] 
[2026-01-07 23:34:57] 2026-01-08 04:34:21,776 | INFO     | ***************************************
[2026-01-07 23:34:57] 2026-01-08 04:34:22,283 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-07 23:34:57] 2026-01-08 04:34:22,471 | INFO     | sufficient remaining disk space (73961308160 B)
[2026-01-07 23:34:57] 2026-01-08 04:34:22,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 23:34:57] 2026-01-08 04:34:22,472 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 23:34:57] 2026-01-08 04:34:22,472 | INFO     | update_server=False
[2026-01-07 23:34:57] 2026-01-08 04:34:22,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 23:34:57] 2026-01-08 04:34:22,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 23:34:57] 2026-01-08 04:34:22,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 23:34:57] 2026-01-08 04:34:22,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 23:34:57] 2026-01-08 04:34:22,481 | INFO     | aborting loop
[2026-01-07 23:34:57] 2026-01-08 04:34:22,932 | INFO     | all data control threads have been joined
[2026-01-07 23:34:57] 2026-01-08 04:34:23,480 | INFO     | [job] retrieve thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:23,486 | INFO     | [job] queue monitor thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:23,497 | INFO     | [job] job monitor thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:23,644 | INFO     | [payload] failed_post thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:23,745 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 23:34:57] 2026-01-08 04:34:23,758 | INFO     | [payload] validate_post thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:23,909 | INFO     | all payload control threads have been joined
[2026-01-07 23:34:57] 2026-01-08 04:34:23,938 | INFO     | [data] control thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,079 | INFO     | all job control threads have been joined
[2026-01-07 23:34:57] 2026-01-08 04:34:24,449 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,500 | INFO     | [data] copytool_out thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,651 | INFO     | [monitor] cgroup control has ended
[2026-01-07 23:34:57] 2026-01-08 04:34:24,883 | INFO     | [job] validate thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,900 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,915 | INFO     | [payload] control thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,948 | INFO     | [data] copytool_in thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,955 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:24,961 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:25,085 | INFO     | [job] control thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:27,769 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 23:34:57] 2026-01-08 04:34:28,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329701164864)>', '<ExcThread(monitor, started 140328988305152)>']
[2026-01-07 23:34:57] 2026-01-08 04:34:33,161 | INFO     | all workflow threads have been joined
[2026-01-07 23:34:57] 2026-01-08 04:34:33,161 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 23:34:57] 2026-01-08 04:34:33,162 | INFO     | traces error code: 0
[2026-01-07 23:34:57] 2026-01-08 04:34:33,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 23:34:57] 2026-01-08 04:34:55,594 | INFO     | PID=410199 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-07 23:34:57] 2026-01-08 04:34:55,594 | INFO     | .. there are 55 such processes running
[2026-01-07 23:34:57] 2026-01-08 04:34:55,594 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 23:34:57] 2026-01-08 04:34:55,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 23:34:57] 2026-01-08 04:34:55,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 23:34:57] 2026-01-08 04:34:55,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 23:34:57] 2026-01-08 04:34:55,595 | INFO     | [monitor] control thread has ended
[2026-01-07 23:34:57] 2026-01-08 04:34:55,861 [wrapper] ==== pilot stdout END ====
[2026-01-07 23:34:57] 2026-01-08 04:34:55,896 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 23:34:57] 2026-01-08 04:34:55,909 [wrapper] pilotpid: 410199
[2026-01-07 23:34:57] 2026-01-08 04:34:55,933 [wrapper] Pilot exit status: 0
[2026-01-07 23:34:57] 2026-01-08 04:34:56,015 [wrapper] pandaids: 6961933058
[2026-01-07 23:34:57] 2026-01-08 04:34:56,362 [wrapper] cleanup supervisor_pilot  507908 410202
[2026-01-07 23:34:57] 2026-01-08 04:34:56,376 [wrapper] Test setup, not cleaning
[2026-01-07 23:34:57] 2026-01-08 04:34:56,401 [wrapper] apfmon messages muted
[2026-01-07 23:34:57] 2026-01-08 04:34:56,420 [wrapper] ==== wrapper stdout END ====
[2026-01-07 23:34:57] 2026-01-08 04:34:56,433 [wrapper] ==== wrapper stderr END ====
[2026-01-07 23:34:57]  *** Error codes and diagnostics ***
[2026-01-07 23:34:57]     "exeErrorCode": 0,
[2026-01-07 23:34:57]     "exeErrorDiag": "",
[2026-01-07 23:34:57]     "pilotErrorCode": 0,
[2026-01-07 23:34:57]     "pilotErrorDiag": "",
[2026-01-07 23:34:57]  *** Listing of results directory ***
[2026-01-07 23:34:57] total 452996
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 08:00 pilot3.tar.gz
[2026-01-07 23:34:57] -rwx------. 1 boincer umatlas     36322 Jan  7 08:04 runpilot2-wrapper.sh
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 08:05 queuedata.json
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas       100 Jan  7 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 23:34:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 09:45 run_atlas
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas       105 Jan  7 09:45 job.xml
[2026-01-07 23:34:57] -rw-r--r--. 2 boincer umatlas 222836855 Jan  7 09:45 EVNT.47898824._000129.pool.root.1
[2026-01-07 23:34:57] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 09:45 start_atlas.sh
[2026-01-07 23:34:57] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 09:45 shared
[2026-01-07 23:34:57] -rw-r--r--. 2 boincer umatlas    592406 Jan  7 09:45 input.tar.gz
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas         0 Jan  7 09:45 boinc_lockfile
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 09:45 pandaJob.out
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas        57 Jan  7 09:45 setup.sh.local
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas    989079 Jan  7 09:46 agis_schedconf.cvmfs.json
[2026-01-07 23:34:57] drwx------. 5 boincer umatlas      4096 Jan  7 09:46 pilot3
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas      6838 Jan  7 23:28 init_data.xml
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas 226179452 Jan  7 23:30 HITS.47898826._006735.pool.root.1
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas       532 Jan  7 23:30 boinc_task_state.xml
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas      1045 Jan  7 23:33 memory_monitor_summary.json
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas   1516240 Jan  7 23:33 agis_ddmendpoints.agis.ALL.json
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas    820768 Jan  7 23:33 log.47898826._006735.job.log.tgz.1
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas      7816 Jan  7 23:34 heartbeat.json
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas        95 Jan  7 23:34 pilot_heartbeat.json
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas      8192 Jan  7 23:34 boinc_mmap_file
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas        29 Jan  7 23:34 wrapper_checkpoint.txt
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas       822 Jan  7 23:34 pilotlog.txt
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas   4651460 Jan  7 23:34 log.47898826._006735.job.log.1
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas       357 Jan  7 23:34 output.list
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas       620 Jan  7 23:34 runtime_log
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas   5488640 Jan  7 23:34 result.tar.gz
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas      9328 Jan  7 23:34 runtime_log.err
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas       657 Jan  7 23:34 hm6NDmFOix8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYxcKDm5YTvJm.diag
[2026-01-07 23:34:57] -rw-r--r--. 1 boincer umatlas     21295 Jan  7 23:34 stderr.txt
[2026-01-07 23:34:57] HITS file was successfully produced:
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas 226179452 Jan  7 23:30 shared/HITS.pool.root.1
[2026-01-07 23:34:57]  *** Contents of shared directory: ***
[2026-01-07 23:34:57] total 444456
[2026-01-07 23:34:57] -rw-r--r--. 2 boincer umatlas 222836855 Jan  7 09:45 ATLAS.root_0
[2026-01-07 23:34:57] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 09:45 start_atlas.sh
[2026-01-07 23:34:57] -rw-r--r--. 2 boincer umatlas    592406 Jan  7 09:45 input.tar.gz
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas 226179452 Jan  7 23:30 HITS.pool.root.1
[2026-01-07 23:34:57] -rw-------. 1 boincer umatlas   5488640 Jan  7 23:34 result.tar.gz
23:34:58 (391360): run_atlas exited; CPU time 100006.764592
23:34:58 (391360): called boinc_finish(0)

</stderr_txt>
]]>

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