Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:12:06 (2952745): wrapper (7.7.26015): starting
09:12:06 (2952745): wrapper: running run_atlas (--nthreads 10)
[2026-01-07 09:12:06] Arguments: --nthreads 10
[2026-01-07 09:12:06] Threads: 10
[2026-01-07 09:12:06] Checking for CVMFS
[2026-01-07 09:12:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 09:12:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 09:12:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 09:12:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 09:12:07] 2.13.3.0 11958 20100 190188 154869 3 518 37246940 40960001 15865 16776704 0 27935515 99.747 22192153 43298 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-07 09:12:07] CVMFS is ok
[2026-01-07 09:12:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 09:12:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 09:12:07] Further information can be found at the LHC@home message board.
[2026-01-07 09:12:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 09:12:07] Checking for apptainer binary...
[2026-01-07 09:12:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 09:12:07] Running /usr/bin/apptainer --version
[2026-01-07 09:12:07] apptainer version 1.4.5-2.el9
[2026-01-07 09:12:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 09:12:07] c-212-1.aglt2.org
[2026-01-07 09:12:07] apptainer works
[2026-01-07 09:12:08] Set ATHENA_PROC_NUMBER=10
[2026-01-07 09:12:08] Set ATHENA_CORE_NUMBER=10
[2026-01-07 09:12:08] Starting ATLAS job with PandaID=6961934020
[2026-01-07 09:12:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 11:36:09]  *** The last 200 lines of the pilot log: ***
[2026-01-07 11:36:09] 2026-01-07 16:35:34,406 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-07 11:36:09] 2026-01-07 16:35:34,413 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3139.0088124999997
[2026-01-07 11:36:09] 2026-01-07 16:35:34,535 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6961934020/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,536 | INFO     | extracted standard info from prmon json
[2026-01-07 11:36:09] 2026-01-07 16:35:34,536 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 11:36:09] 2026-01-07 16:35:34,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 11:36:09] 2026-01-07 16:35:34,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 11:36:09] 2026-01-07 16:35:34,551 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 11:36:09] 2026-01-07 16:35:34,554 | INFO     | fitting pss+swap vs Time
[2026-01-07 11:36:09] 2026-01-07 16:35:34,554 | INFO     | sum of square deviations: 869193637.9716343
[2026-01-07 11:36:09] 2026-01-07 16:35:34,555 | INFO     | sum of deviations: -9663389941.517736
[2026-01-07 11:36:09] 2026-01-07 16:35:34,555 | INFO     | mean x: 1767799449.0141845
[2026-01-07 11:36:09] 2026-01-07 16:35:34,555 | INFO     | mean y: 2609815.7588652484
[2026-01-07 11:36:09] 2026-01-07 16:35:34,555 | INFO     | intersect: 19656383920.789486
[2026-01-07 11:36:09] 2026-01-07 16:35:34,556 | INFO     | chi2: 2.104610161748401
[2026-01-07 11:36:09] 2026-01-07 16:35:34,556 | INFO     | sum of square deviations: 779964667.9705864
[2026-01-07 11:36:09] 2026-01-07 16:35:34,557 | INFO     | sum of deviations: 622146191.6323562
[2026-01-07 11:36:09] 2026-01-07 16:35:34,557 | INFO     | mean x: 1767799296.514706
[2026-01-07 11:36:09] 2026-01-07 16:35:34,557 | INFO     | mean y: 2626927.9338235296
[2026-01-07 11:36:09] 2026-01-07 16:35:34,557 | INFO     | intersect: -1407474894.7021458
[2026-01-07 11:36:09] 2026-01-07 16:35:34,558 | INFO     | chi2: 1.3540018520802293
[2026-01-07 11:36:09] 2026-01-07 16:35:34,558 | INFO     | current chi2=1.3540018520802293 (change=35.66495702199809 %)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,558 | INFO     | sum of square deviations: 697061397.9694679
[2026-01-07 11:36:09] 2026-01-07 16:35:34,559 | INFO     | sum of deviations: 1204716159.938928
[2026-01-07 11:36:09] 2026-01-07 16:35:34,559 | INFO     | mean x: 1767799144.0152671
[2026-01-07 11:36:09] 2026-01-07 16:35:34,559 | INFO     | mean y: 2628000.0305343512
[2026-01-07 11:36:09] 2026-01-07 16:35:34,559 | INFO     | intersect: -3052621082.0807085
[2026-01-07 11:36:09] 2026-01-07 16:35:34,560 | INFO     | chi2: 1.3555241393900856
[2026-01-07 11:36:09] 2026-01-07 16:35:34,560 | INFO     | current chi2=1.3555241393900856 (change=-0.11242874649821182 %)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,560 | INFO     | right removable region: 130
[2026-01-07 11:36:09] 2026-01-07 16:35:34,560 | INFO     | sum of square deviations: 779963447.9705864
[2026-01-07 11:36:09] 2026-01-07 16:35:34,561 | INFO     | sum of deviations: -28779487024.852936
[2026-01-07 11:36:09] 2026-01-07 16:35:34,561 | INFO     | mean x: 1767799601.514706
[2026-01-07 11:36:09] 2026-01-07 16:35:34,561 | INFO     | mean y: 2641862.4264705884
[2026-01-07 11:36:09] 2026-01-07 16:35:34,561 | INFO     | intersect: 65231808468.51502
[2026-01-07 11:36:09] 2026-01-07 16:35:34,562 | INFO     | chi2: 0.8098194811327566
[2026-01-07 11:36:09] 2026-01-07 16:35:34,562 | INFO     | current chi2=0.8098194811327566 (change=61.521639691219555 %)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,562 | INFO     | sum of square deviations: 697058957.9694679
[2026-01-07 11:36:09] 2026-01-07 16:35:34,563 | INFO     | sum of deviations: -27625166396.41985
[2026-01-07 11:36:09] 2026-01-07 16:35:34,563 | INFO     | mean x: 1767799754.0152671
[2026-01-07 11:36:09] 2026-01-07 16:35:34,563 | INFO     | mean y: 2639727.709923664
[2026-01-07 11:36:09] 2026-01-07 16:35:34,563 | INFO     | intersect: 70062369685.81903
[2026-01-07 11:36:09] 2026-01-07 16:35:34,563 | INFO     | chi2: 0.8074801114809641
[2026-01-07 11:36:09] 2026-01-07 16:35:34,564 | INFO     | current chi2=0.8074801114809641 (change=0.2888754477133883 %)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,564 | INFO     | left removable region: 20
[2026-01-07 11:36:09] 2026-01-07 16:35:34,564 | INFO     | sum of square deviations: 412690957.46363544
[2026-01-07 11:36:09] 2026-01-07 16:35:34,564 | INFO     | sum of deviations: -13455523428.49091
[2026-01-07 11:36:09] 2026-01-07 16:35:34,565 | INFO     | mean x: 1767799723.5181818
[2026-01-07 11:36:09] 2026-01-07 16:35:34,565 | INFO     | mean y: 2655923.7454545456
[2026-01-07 11:36:09] 2026-01-07 16:35:34,565 | INFO     | intersect: 57640629730.75485
[2026-01-07 11:36:09] 2026-01-07 16:35:34,565 | INFO     | chi2: 0.02479092374290882
[2026-01-07 11:36:09] 2026-01-07 16:35:34,565 | INFO     | current memory leak: -32.60 B/s (using 110 data points, chi2=0.02)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,566 | INFO     | could have reported an average CPU frequency of 3055 MHz (8 samples)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,566 | INFO     | ..............................
[2026-01-07 11:36:09] 2026-01-07 16:35:34,566 | INFO     | . Timing measurements:
[2026-01-07 11:36:09] 2026-01-07 16:35:34,566 | INFO     | . get job = 0 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,566 | INFO     | . initial setup = 3 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,566 | INFO     | . payload setup = 9 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,567 | INFO     | . stage-in = 0 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,567 | INFO     | . payload execution = 8548 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,567 | INFO     | . stage-out = 1 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,567 | INFO     | . log creation = 0 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,567 | INFO     | ..............................
[2026-01-07 11:36:09] 2026-01-07 16:35:34,646 | INFO     | 
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | job summary report
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | --------------------------------------------------
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | PanDA job id: 6961934020
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | task id: 47898826
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | errors: (none)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | pilot state: finished 
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | transexitcode: 0
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | exeerrorcode: 0
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | exeerrordiag: 
[2026-01-07 11:36:09] 2026-01-07 16:35:34,655 | INFO     | exitcode: 0
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | exitmsg: OK
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | cpuconsumptiontime: 46383 s
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | nevents: 400
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | neventsw: 0
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | pid: 2963258
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | pgrp: 2963258
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | corecount: 10
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | event service: False
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | sizes: {0: 2283742, 1: 2283941, 2: 2283941, 6: 2284231, 12: 2284259, 8562: 2312254, 8564: 2321308, 8573: 2321446}
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | --------------------------------------------------
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | 
[2026-01-07 11:36:09] 2026-01-07 16:35:34,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-07 11:36:09] 2026-01-07 16:35:34,682 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | job 6961934020 has completed (purged errors)
[2026-01-07 11:36:09] 2026-01-07 16:35:34,684 | INFO     | overall cleanup function is called
[2026-01-07 11:36:09] 2026-01-07 16:35:35,014 | INFO     | PID=2956408 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-07 11:36:09] 2026-01-07 16:35:35,014 | INFO     | .. there are 16 such processes running
[2026-01-07 11:36:09] 2026-01-07 16:35:35,699 | INFO     | --- collectZombieJob: --- 10, [2963258]
[2026-01-07 11:36:09] 2026-01-07 16:35:35,700 | INFO     | zombie collector waiting for pid 2963258
[2026-01-07 11:36:09] 2026-01-07 16:35:35,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 11:36:09] 2026-01-07 16:35:35,700 | INFO     | collected zombie processes
[2026-01-07 11:36:09] 2026-01-07 16:35:35,700 | INFO     | will attempt to kill all subprocesses of pid=2963258
[2026-01-07 11:36:09] 2026-01-07 16:35:36,128 | INFO     | process IDs to be killed: [2963258] (in reverse order)
[2026-01-07 11:36:09] 2026-01-07 16:35:36,263 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 11:36:09] 2026-01-07 16:35:36,263 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 11:36:09] 2026-01-07 16:35:36,278 | INFO     | did not find any defunct processes belonging to 2963258
[2026-01-07 11:36:09] 2026-01-07 16:35:36,293 | INFO     | did not find any defunct processes belonging to 2963258
[2026-01-07 11:36:09] 2026-01-07 16:35:36,293 | INFO     | ready for new job
[2026-01-07 11:36:09] 2026-01-07 16:35:36,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 11:36:09] 2026-01-07 16:35:36,299 | INFO     | ***************************************
[2026-01-07 11:36:09] 2026-01-07 16:35:36,300 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 11:36:09] 2026-01-07 16:35:36,300 | INFO     | ***************************************
[2026-01-07 11:36:09] 2026-01-07 16:35:36,300 | INFO     | 
[2026-01-07 11:36:09] 2026-01-07 16:35:36,305 | INFO     | architecture information:
[2026-01-07 11:36:09] 2026-01-07 16:35:36,305 | INFO     | executing command: cat /etc/os-release
[2026-01-07 11:36:09] 2026-01-07 16:35:36,319 | INFO     | cat /etc/os-release:
[2026-01-07 11:36:09] NAME="CentOS Linux"
[2026-01-07 11:36:09] VERSION="7 (Core)"
[2026-01-07 11:36:09] ID="centos"
[2026-01-07 11:36:09] ID_LIKE="rhel fedora"
[2026-01-07 11:36:09] VERSION_ID="7"
[2026-01-07 11:36:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 11:36:09] ANSI_COLOR="0;31"
[2026-01-07 11:36:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 11:36:09] HOME_URL="https://www.centos.org/"
[2026-01-07 11:36:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 11:36:09] 
[2026-01-07 11:36:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 11:36:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 11:36:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 11:36:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 11:36:09] 
[2026-01-07 11:36:09] 2026-01-07 16:35:36,320 | INFO     | ***************************************
[2026-01-07 11:36:09] 2026-01-07 16:35:36,823 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-07 11:36:09] 2026-01-07 16:35:36,854 | INFO     | sufficient remaining disk space (128012255232 B)
[2026-01-07 11:36:09] 2026-01-07 16:35:36,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 11:36:09] 2026-01-07 16:35:36,854 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 11:36:09] 2026-01-07 16:35:36,854 | INFO     | update_server=False
[2026-01-07 11:36:09] 2026-01-07 16:35:36,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 11:36:09] 2026-01-07 16:35:36,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 11:36:09] 2026-01-07 16:35:36,855 | INFO     | aborting loop
[2026-01-07 11:36:09] 2026-01-07 16:35:36,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 11:36:09] 2026-01-07 16:35:36,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 11:36:09] 2026-01-07 16:35:37,275 | INFO     | all payload control threads have been joined
[2026-01-07 11:36:09] 2026-01-07 16:35:37,346 | INFO     | all data control threads have been joined
[2026-01-07 11:36:09] 2026-01-07 16:35:37,510 | INFO     | all job control threads have been joined
[2026-01-07 11:36:09] 2026-01-07 16:35:37,798 | INFO     | [monitor] cgroup control has ended
[2026-01-07 11:36:09] 2026-01-07 16:35:37,860 | INFO     | [job] retrieve thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:37,864 | INFO     | [job] job monitor thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:37,871 | INFO     | [data] copytool_in thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:37,872 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,226 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,281 | INFO     | [payload] control thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,351 | INFO     | [data] control thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,507 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,516 | INFO     | [job] control thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,700 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,718 | INFO     | [payload] failed_post thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,787 | INFO     | [job] validate thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:38,863 | INFO     | [data] copytool_out thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:39,363 | INFO     | [payload] validate_post thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:39,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 11:36:09] 2026-01-07 16:35:40,664 | INFO     | [job] queue monitor thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:40,862 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 11:36:09] 2026-01-07 16:35:41,679 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109106157376)>', '<ExcThread(monitor, started 140108728620800)>']
[2026-01-07 11:36:09] 2026-01-07 16:35:46,706 | INFO     | all workflow threads have been joined
[2026-01-07 11:36:09] 2026-01-07 16:35:46,706 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 11:36:09] 2026-01-07 16:35:46,706 | INFO     | traces error code: 0
[2026-01-07 11:36:09] 2026-01-07 16:35:46,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 11:36:09] 2026-01-07 16:36:08,500 | INFO     | PID=2956408 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-07 11:36:09] 2026-01-07 16:36:08,500 | INFO     | .. there are 16 such processes running
[2026-01-07 11:36:09] 2026-01-07 16:36:08,501 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 11:36:09] 2026-01-07 16:36:08,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 11:36:09] 2026-01-07 16:36:08,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 11:36:09] 2026-01-07 16:36:08,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 11:36:09] 2026-01-07 16:36:08,501 | INFO     | [monitor] control thread has ended
[2026-01-07 11:36:09] 2026-01-07 16:36:08,692 [wrapper] ==== pilot stdout END ====
[2026-01-07 11:36:09] 2026-01-07 16:36:08,695 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 11:36:09] 2026-01-07 16:36:08,698 [wrapper] pilotpid: 2956408
[2026-01-07 11:36:09] 2026-01-07 16:36:08,700 [wrapper] Pilot exit status: 0
[2026-01-07 11:36:09] 2026-01-07 16:36:08,714 [wrapper] pandaids: 6961934020
[2026-01-07 11:36:09] 2026-01-07 16:36:08,802 [wrapper] cleanup supervisor_pilot 3271395 2956409
[2026-01-07 11:36:09] 2026-01-07 16:36:08,806 [wrapper] Test setup, not cleaning
[2026-01-07 11:36:09] 2026-01-07 16:36:08,809 [wrapper] apfmon messages muted
[2026-01-07 11:36:09] 2026-01-07 16:36:08,811 [wrapper] ==== wrapper stdout END ====
[2026-01-07 11:36:09] 2026-01-07 16:36:08,813 [wrapper] ==== wrapper stderr END ====
[2026-01-07 11:36:09]  *** Error codes and diagnostics ***
[2026-01-07 11:36:09]     "exeErrorCode": 0,
[2026-01-07 11:36:09]     "exeErrorDiag": "",
[2026-01-07 11:36:09]     "pilotErrorCode": 0,
[2026-01-07 11:36:09]     "pilotErrorDiag": "",
[2026-01-07 11:36:09]  *** Listing of results directory ***
[2026-01-07 11:36:09] total 438616
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 08:00 pilot3.tar.gz
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 08:05 queuedata.json
[2026-01-07 11:36:09] -rwx------. 1 boincer umatlas     36322 Jan  7 08:05 runpilot2-wrapper.sh
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas       100 Jan  7 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 11:36:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 09:12 run_atlas
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas       105 Jan  7 09:12 job.xml
[2026-01-07 11:36:09] -rw-r--r--. 2 boincer umatlas 222746580 Jan  7 09:12 EVNT.47898824._000126.pool.root.1
[2026-01-07 11:36:09] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 09:12 start_atlas.sh
[2026-01-07 11:36:09] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 09:12 shared
[2026-01-07 11:36:09] -rw-r--r--. 2 boincer umatlas    592405 Jan  7 09:12 input.tar.gz
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas         0 Jan  7 09:12 boinc_lockfile
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 09:12 pandaJob.out
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas        57 Jan  7 09:12 setup.sh.local
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas    989080 Jan  7 09:12 agis_schedconf.cvmfs.json
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas   1516240 Jan  7 09:12 agis_ddmendpoints.agis.ALL.json
[2026-01-07 11:36:09] drwx------. 5 boincer umatlas      4096 Jan  7 09:12 pilot3
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas      6952 Jan  7 11:31 init_data.xml
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas 219225539 Jan  7 11:34 HITS.47898826._007511.pool.root.1
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas       529 Jan  7 11:34 boinc_task_state.xml
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas      1034 Jan  7 11:35 memory_monitor_summary.json
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas    426010 Jan  7 11:35 log.47898826._007511.job.log.tgz.1
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas      7775 Jan  7 11:35 heartbeat.json
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas        27 Jan  7 11:35 wrapper_checkpoint.txt
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas        95 Jan  7 11:36 pilot_heartbeat.json
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas       823 Jan  7 11:36 pilotlog.txt
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas      8192 Jan  7 11:36 boinc_mmap_file
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas   1203340 Jan  7 11:36 log.47898826._007511.job.log.1
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas       357 Jan  7 11:36 output.list
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas       620 Jan  7 11:36 runtime_log
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas   1648640 Jan  7 11:36 result.tar.gz
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas      9339 Jan  7 11:36 runtime_log.err
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas       653 Jan  7 11:36 gA7MDmEPix8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmF2hKDm6iR7Ho.diag
[2026-01-07 11:36:09] -rw-r--r--. 1 boincer umatlas     21266 Jan  7 11:36 stderr.txt
[2026-01-07 11:36:09] HITS file was successfully produced:
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas 219225539 Jan  7 11:34 shared/HITS.pool.root.1
[2026-01-07 11:36:09]  *** Contents of shared directory: ***
[2026-01-07 11:36:09] total 433828
[2026-01-07 11:36:09] -rw-r--r--. 2 boincer umatlas 222746580 Jan  7 09:12 ATLAS.root_0
[2026-01-07 11:36:09] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 09:12 start_atlas.sh
[2026-01-07 11:36:09] -rw-r--r--. 2 boincer umatlas    592405 Jan  7 09:12 input.tar.gz
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas 219225539 Jan  7 11:34 HITS.pool.root.1
[2026-01-07 11:36:09] -rw-------. 1 boincer umatlas   1648640 Jan  7 11:36 result.tar.gz
11:36:10 (2952745): run_atlas exited; CPU time 46589.785592
11:36:10 (2952745): called boinc_finish(0)

</stderr_txt>
]]>

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