Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:48:48 (556239): wrapper (7.7.26015): starting
08:48:48 (556239): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 08:48:48] Arguments: --nthreads 8
[2026-01-07 08:48:48] Threads: 8
[2026-01-07 08:48:48] Checking for CVMFS
[2026-01-07 08:48:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 08:48:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 08:48:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 08:48:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 08:48:51] 2.13.3.0 7109 90588 426440 154869 0 682 18259123 21042177 13819 16776704 0 369209920 99.463 493823379 31920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 08:48:51] CVMFS is ok
[2026-01-07 08:48:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 08:48:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 08:48:51] Further information can be found at the LHC@home message board.
[2026-01-07 08:48:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 08:48:51] Checking for apptainer binary...
[2026-01-07 08:48:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 08:48:51] Running /usr/bin/apptainer --version
[2026-01-07 08:48:52] apptainer version 1.4.5-2.el9
[2026-01-07 08:48:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 08:48:53] c-16-11.aglt2.org
[2026-01-07 08:48:53] apptainer works
[2026-01-07 08:48:53] Set ATHENA_PROC_NUMBER=8
[2026-01-07 08:48:53] Set ATHENA_CORE_NUMBER=8
[2026-01-07 08:48:54] Starting ATLAS job with PandaID=6961934279
[2026-01-07 08:48:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:20:03 (556239): BOINC client no longer exists - exiting
16:20:03 (556239): timer handler: client dead, exiting
16:30:08 (2375473): wrapper (7.7.26015): starting
16:30:08 (2375473): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 16:30:08] Arguments: --nthreads 8
[2026-01-07 16:30:08] Threads: 8
[2026-01-07 16:30:08] This job has been restarted, cleaning up previous attempt
[2026-01-07 16:30:08] Checking for CVMFS
[2026-01-07 16:30:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 16:30:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 16:30:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 16:30:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 16:30:10] 2.13.3.0 7109 91049 408880 154880 0 110 14508199 21042176 14443 16776704 0 371443153 99.461 497975800 31850 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 16:30:10] CVMFS is ok
[2026-01-07 16:30:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 16:30:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 16:30:10] Further information can be found at the LHC@home message board.
[2026-01-07 16:30:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 16:30:10] Checking for apptainer binary...
[2026-01-07 16:30:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 16:30:10] Running /usr/bin/apptainer --version
[2026-01-07 16:30:10] apptainer version 1.4.5-2.el9
[2026-01-07 16:30:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 16:30:12] c-16-11.aglt2.org
[2026-01-07 16:30:12] apptainer works
[2026-01-07 16:30:12] Set ATHENA_PROC_NUMBER=8
[2026-01-07 16:30:12] Set ATHENA_CORE_NUMBER=8
[2026-01-07 16:30:12] Starting ATLAS job with PandaID=6961934279
[2026-01-07 16:30:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 03:56:13]  *** The last 200 lines of the pilot log: ***
[2026-01-08 03:56:13] 2026-01-08 07:31:55,234 | INFO     | monitor loop #1940: job 0:6961934279 is in state 'finished'
[2026-01-08 03:56:13] 2026-01-08 07:31:55,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 03:56:13] 2026-01-08 07:31:56,853 | INFO     | time since job start (36059s) is within the limit (174528.0s)
[2026-01-08 03:56:13] 2026-01-08 07:31:57,757 | INFO     | monitor loop #1941: job 0:6961934279 is in state 'finished'
[2026-01-08 03:56:13] 2026-01-08 07:31:57,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 03:56:13] 2026-01-08 07:31:58,865 | INFO     | time since job start (36061s) is within the limit (174528.0s)
[2026-01-08 03:56:13] 2026-01-08 07:32:00,289 | INFO     | monitor loop #1942: job 0:6961934279 is in state 'finished'
[2026-01-08 03:56:13] 2026-01-08 07:32:00,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 03:56:13] 2026-01-08 07:32:00,872 | INFO     | time since job start (36063s) is within the limit (174528.0s)
[2026-01-08 03:56:13] 2026-01-08 07:32:00,900 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 03:56:13] 2026-01-08 07:32:00,956 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2900.0361249999996
[2026-01-08 03:56:13] 2026-01-08 07:32:01,019 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6961934279/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,020 | INFO     | extracted standard info from prmon json
[2026-01-08 03:56:13] 2026-01-08 07:32:01,020 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 03:56:13] 2026-01-08 07:32:01,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 03:56:13] 2026-01-08 07:32:01,053 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 03:56:13] 2026-01-08 07:32:01,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 03:56:13] 2026-01-08 07:32:01,092 | INFO     | fitting pss+swap vs Time
[2026-01-08 03:56:13] 2026-01-08 07:32:01,093 | INFO     | sum of square deviations: 63359501223.02218
[2026-01-08 03:56:13] 2026-01-08 07:32:01,103 | INFO     | sum of deviations: 64448430185.33963
[2026-01-08 03:56:13] 2026-01-08 07:32:01,104 | INFO     | mean x: 1767839487.1697793
[2026-01-08 03:56:13] 2026-01-08 07:32:01,104 | INFO     | mean y: 2520151.996604414
[2026-01-08 03:56:13] 2026-01-08 07:32:01,104 | INFO     | intersect: -1795702333.4788516
[2026-01-08 03:56:13] 2026-01-08 07:32:01,105 | INFO     | chi2: 2.8937195706007426
[2026-01-08 03:56:13] 2026-01-08 07:32:01,106 | INFO     | sum of square deviations: 61759647876.18486
[2026-01-08 03:56:13] 2026-01-08 07:32:01,116 | INFO     | sum of deviations: 101563584005.45215
[2026-01-08 03:56:13] 2026-01-08 07:32:01,116 | INFO     | mean x: 1767839334.6746576
[2026-01-08 03:56:13] 2026-01-08 07:32:01,116 | INFO     | mean y: 2523665.2602739725
[2026-01-08 03:56:13] 2026-01-08 07:32:01,116 | INFO     | intersect: -2904683628.656435
[2026-01-08 03:56:13] 2026-01-08 07:32:01,117 | INFO     | chi2: 2.2083044233774665
[2026-01-08 03:56:13] 2026-01-08 07:32:01,117 | INFO     | current chi2=2.2083044233774665 (change=23.686301678534193 %)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,118 | INFO     | right removable region: 583
[2026-01-08 03:56:13] 2026-01-08 07:32:01,119 | INFO     | sum of square deviations: 61759335491.12166
[2026-01-08 03:56:13] 2026-01-08 07:32:01,128 | INFO     | sum of deviations: -61029177757.981125
[2026-01-08 03:56:13] 2026-01-08 07:32:01,129 | INFO     | mean x: 1767839639.6797945
[2026-01-08 03:56:13] 2026-01-08 07:32:01,129 | INFO     | mean y: 2532079.823630137
[2026-01-08 03:56:13] 2026-01-08 07:32:01,129 | INFO     | intersect: 1749471206.6724513
[2026-01-08 03:56:13] 2026-01-08 07:32:01,130 | INFO     | chi2: 0.851739670654524
[2026-01-08 03:56:13] 2026-01-08 07:32:01,130 | INFO     | current chi2=0.851739670654524 (change=70.56592216785882 %)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,131 | INFO     | sum of square deviations: 60186333059.10194
[2026-01-08 03:56:13] 2026-01-08 07:32:01,140 | INFO     | sum of deviations: -79378373457.55441
[2026-01-08 03:56:13] 2026-01-08 07:32:01,140 | INFO     | mean x: 1767839792.1899827
[2026-01-08 03:56:13] 2026-01-08 07:32:01,140 | INFO     | mean y: 2533856.559585492
[2026-01-08 03:56:13] 2026-01-08 07:32:01,141 | INFO     | intersect: 2334097188.384136
[2026-01-08 03:56:13] 2026-01-08 07:32:01,141 | INFO     | chi2: 0.8086899800378906
[2026-01-08 03:56:13] 2026-01-08 07:32:01,142 | INFO     | current chi2=0.8086899800378906 (change=5.054324942215227 %)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,142 | INFO     | left removable region: 20
[2026-01-08 03:56:13] 2026-01-08 07:32:01,143 | INFO     | sum of square deviations: 55333128757.26823
[2026-01-08 03:56:13] 2026-01-08 07:32:01,152 | INFO     | sum of deviations: -28198250627.964455
[2026-01-08 03:56:13] 2026-01-08 07:32:01,152 | INFO     | mean x: 1767839914.2095914
[2026-01-08 03:56:13] 2026-01-08 07:32:01,152 | INFO     | mean y: 2536194.0674955593
[2026-01-08 03:56:13] 2026-01-08 07:32:01,153 | INFO     | intersect: 903443012.2899017
[2026-01-08 03:56:13] 2026-01-08 07:32:01,153 | INFO     | chi2: 0.09698025403439539
[2026-01-08 03:56:13] 2026-01-08 07:32:01,154 | INFO     | current memory leak: -0.51 B/s (using 563 data points, chi2=0.10)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,155 | INFO     | could have reported an average CPU frequency of 2900 MHz (23 samples)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,155 | INFO     | ..............................
[2026-01-08 03:56:13] 2026-01-08 07:32:01,155 | INFO     | . Timing measurements:
[2026-01-08 03:56:13] 2026-01-08 07:32:01,155 | INFO     | . get job = 0 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,155 | INFO     | . initial setup = 5 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,156 | INFO     | . payload setup = 23 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,156 | INFO     | . stage-in = 0 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,156 | INFO     | . payload execution = 35928 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,156 | INFO     | . stage-out = 7 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,156 | INFO     | . log creation = 1 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,156 | INFO     | ..............................
[2026-01-08 03:56:13] 2026-01-08 07:32:01,473 | INFO     | 
[2026-01-08 03:56:13] 2026-01-08 07:32:01,473 | INFO     | job summary report
[2026-01-08 03:56:13] 2026-01-08 07:32:01,473 | INFO     | --------------------------------------------------
[2026-01-08 03:56:13] 2026-01-08 07:32:01,473 | INFO     | PanDA job id: 6961934279
[2026-01-08 03:56:13] 2026-01-08 07:32:01,474 | INFO     | task id: 47898826
[2026-01-08 03:56:13] 2026-01-08 07:32:01,474 | INFO     | errors: (none)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,474 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 03:56:13] 2026-01-08 07:32:01,474 | INFO     | pilot state: finished 
[2026-01-08 03:56:13] 2026-01-08 07:32:01,474 | INFO     | transexitcode: 0
[2026-01-08 03:56:13] 2026-01-08 07:32:01,474 | INFO     | exeerrorcode: 0
[2026-01-08 03:56:13] 2026-01-08 07:32:01,475 | INFO     | exeerrordiag: 
[2026-01-08 03:56:13] 2026-01-08 07:32:01,475 | INFO     | exitcode: 0
[2026-01-08 03:56:13] 2026-01-08 07:32:01,475 | INFO     | exitmsg: OK
[2026-01-08 03:56:13] 2026-01-08 07:32:01,475 | INFO     | cpuconsumptiontime: 112120 s
[2026-01-08 03:56:13] 2026-01-08 07:32:01,475 | INFO     | nevents: 400
[2026-01-08 03:56:13] 2026-01-08 07:32:01,475 | INFO     | neventsw: 0
[2026-01-08 03:56:13] 2026-01-08 07:32:01,476 | INFO     | pid: 2398776
[2026-01-08 03:56:13] 2026-01-08 07:32:01,476 | INFO     | pgrp: 2398776
[2026-01-08 03:56:13] 2026-01-08 07:32:01,476 | INFO     | corecount: 8
[2026-01-08 03:56:13] 2026-01-08 07:32:01,476 | INFO     | event service: False
[2026-01-08 03:56:13] 2026-01-08 07:32:01,476 | INFO     | sizes: {0: 2283085, 1: 2283770, 2: 2283798, 3: 2283969, 4: 2284025, 15: 2284025, 20: 2284443, 26: 2284471, 35957: 2324790, 35966: 2333788, 35968: 2333844, 36020: 2
[2026-01-08 03:56:13] 2026-01-08 07:32:01,476 | INFO     | --------------------------------------------------
[2026-01-08 03:56:13] 2026-01-08 07:32:01,477 | INFO     | 
[2026-01-08 03:56:13] 2026-01-08 07:32:01,536 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 03:56:13] 2026-01-08 07:32:01,858 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,859 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,859 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,859 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,859 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,862 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,939 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 03:56:13] 2026-01-08 07:32:01,940 | INFO     | job 6961934279 has completed (purged errors)
[2026-01-08 03:56:13] 2026-01-08 07:32:01,940 | INFO     | overall cleanup function is called
[2026-01-08 03:56:13] 2026-01-08 07:32:03,007 | INFO     | --- collectZombieJob: --- 10, [2398776]
[2026-01-08 03:56:13] 2026-01-08 07:32:03,007 | INFO     | zombie collector waiting for pid 2398776
[2026-01-08 03:56:13] 2026-01-08 07:32:03,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 03:56:13] 2026-01-08 07:32:03,008 | INFO     | collected zombie processes
[2026-01-08 03:56:13] 2026-01-08 07:32:03,008 | INFO     | will attempt to kill all subprocesses of pid=2398776
[2026-01-08 03:56:13] 2026-01-08 07:32:04,725 | INFO     | process IDs to be killed: [2398776] (in reverse order)
[2026-01-08 03:56:13] 2026-01-08 07:32:05,311 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 03:56:13] 2026-01-08 07:32:05,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 03:56:13] 2026-01-08 07:32:05,368 | INFO     | did not find any defunct processes belonging to 2398776
[2026-01-08 03:56:13] 2026-01-08 07:32:05,447 | INFO     | did not find any defunct processes belonging to 2398776
[2026-01-08 03:56:13] 2026-01-08 07:32:05,448 | INFO     | ready for new job
[2026-01-08 03:56:13] 2026-01-08 07:32:05,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 03:56:13] 2026-01-08 07:32:05,474 | INFO     | ***************************************
[2026-01-08 03:56:13] 2026-01-08 07:32:05,474 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 03:56:13] 2026-01-08 07:32:05,475 | INFO     | ***************************************
[2026-01-08 03:56:13] 2026-01-08 07:32:05,475 | INFO     | 
[2026-01-08 03:56:13] 2026-01-08 07:32:05,516 | INFO     | architecture information:
[2026-01-08 03:56:13] 2026-01-08 07:32:05,562 | INFO     | executing command: cat /etc/os-release
[2026-01-08 03:56:13] 2026-01-08 07:32:05,670 | INFO     | cat /etc/os-release:
[2026-01-08 03:56:13] NAME="CentOS Linux"
[2026-01-08 03:56:13] VERSION="7 (Core)"
[2026-01-08 03:56:13] ID="centos"
[2026-01-08 03:56:13] ID_LIKE="rhel fedora"
[2026-01-08 03:56:13] VERSION_ID="7"
[2026-01-08 03:56:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 03:56:13] ANSI_COLOR="0;31"
[2026-01-08 03:56:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 03:56:13] HOME_URL="https://www.centos.org/"
[2026-01-08 03:56:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 03:56:13] 
[2026-01-08 03:56:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 03:56:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 03:56:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 03:56:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 03:56:13] 
[2026-01-08 03:56:13] 2026-01-08 07:32:05,671 | INFO     | ***************************************
[2026-01-08 03:56:13] 2026-01-08 07:32:06,174 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 03:56:13] 2026-01-08 07:32:06,323 | INFO     | sufficient remaining disk space (52721352704 B)
[2026-01-08 03:56:13] 2026-01-08 07:32:06,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 03:56:13] 2026-01-08 07:32:06,328 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 03:56:13] 2026-01-08 07:32:06,328 | INFO     | update_server=False
[2026-01-08 03:56:13] 2026-01-08 07:32:06,329 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 03:56:13] 2026-01-08 07:32:06,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 03:56:13] 2026-01-08 07:32:06,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 03:56:13] 2026-01-08 07:32:06,333 | INFO     | aborting loop
[2026-01-08 03:56:13] 2026-01-08 07:32:06,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 03:56:13] 2026-01-08 07:32:06,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 03:56:13] 2026-01-08 07:32:06,866 | INFO     | all job control threads have been joined
[2026-01-08 03:56:13] 2026-01-08 07:32:07,297 | INFO     | all payload control threads have been joined
[2026-01-08 03:56:13] 2026-01-08 07:32:07,336 | INFO     | [job] retrieve thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:07,347 | INFO     | [job] job monitor thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:07,365 | INFO     | all data control threads have been joined
[2026-01-08 03:56:13] 2026-01-08 07:32:07,384 | INFO     | [job] validate thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:07,527 | INFO     | [job] queue monitor thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:07,781 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:07,872 | INFO     | [job] control thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,060 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,073 | INFO     | [payload] validate_post thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,080 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,303 | INFO     | [payload] control thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,357 | INFO     | [data] copytool_out thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,372 | INFO     | [data] control thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,644 | INFO     | [payload] failed_post thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,772 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:08,772 | INFO     | [data] copytool_in thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:10,340 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 03:56:13] 2026-01-08 07:32:35,295 | INFO     | PID=2383945 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 03:56:13] 2026-01-08 07:32:35,314 | INFO     | .. there are 39 such processes running
[2026-01-08 03:56:13] 2026-01-08 07:32:35,315 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 03:56:13] 2026-01-08 07:32:35,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 03:56:13] 2026-01-08 07:32:35,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 03:56:13] 2026-01-08 07:33:05,388 | INFO     | [monitor] cgroup control has ended
[2026-01-08 03:56:13] 2026-01-08 07:33:06,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996765243200)>', '<ExcThread(monitor, started 139996493223680)>']
[2026-01-08 03:56:13] 2026-01-08 07:33:06,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 03:56:13] 2026-01-08 07:33:06,578 | INFO     | [monitor] control thread has ended
[2026-01-08 03:56:13] 2026-01-08 07:33:11,513 | INFO     | all workflow threads have been joined
[2026-01-08 03:56:13] 2026-01-08 07:33:11,513 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 03:56:13] 2026-01-08 07:33:11,514 | INFO     | traces error code: 0
[2026-01-08 03:56:13] 2026-01-08 07:33:11,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 03:56:13] 2026-01-08 07:33:11,940 [wrapper] ==== pilot stdout END ====
[2026-01-08 03:56:13] 2026-01-08 07:33:11,986 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 03:56:13] 2026-01-08 07:33:12,022 [wrapper] pilotpid: 2383945
[2026-01-08 03:56:13] 2026-01-08 07:33:12,043 [wrapper] Pilot exit status: 0
[2026-01-08 03:56:13] 2026-01-08 07:33:12,299 [wrapper] pandaids: 6961934279 6961934279
[2026-01-08 03:56:13] 2026-01-08 07:33:13,124 [wrapper] cleanup supervisor_pilot 1329849 2383946
[2026-01-08 03:56:13] 2026-01-08 07:33:13,153 [wrapper] Test setup, not cleaning
[2026-01-08 03:56:13] 2026-01-08 07:33:13,157 [wrapper] apfmon messages muted
[2026-01-08 03:56:13] 2026-01-08 07:33:13,250 [wrapper] ==== wrapper stdout END ====
[2026-01-08 03:56:13] 2026-01-08 07:33:13,322 [wrapper] ==== wrapper stderr END ====
[2026-01-08 03:56:13]  *** Error codes and diagnostics ***
[2026-01-08 03:56:13]     "exeErrorCode": 0,
[2026-01-08 03:56:13]     "exeErrorDiag": "",
[2026-01-08 03:56:13]     "pilotErrorCode": 0,
[2026-01-08 03:56:13]     "pilotErrorDiag": "",
[2026-01-08 03:56:13]  *** Listing of results directory ***
[2026-01-08 03:56:13] total 670544
[2026-01-08 03:56:13] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 08:00 pilot3.tar.gz
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 08:05 queuedata.json
[2026-01-08 03:56:13] -rwx------. 1 boincer umatlas     36322 Jan  7 08:06 runpilot2-wrapper.sh
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas       100 Jan  7 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 03:56:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 08:48 run_atlas
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas       105 Jan  7 08:48 job.xml
[2026-01-08 03:56:13] -rw-r--r--. 3 boincer umatlas 226176312 Jan  7 08:48 EVNT.47898824._000142.pool.root.1
[2026-01-08 03:56:13] -rw-r--r--. 3 boincer umatlas 226176312 Jan  7 08:48 ATLAS.root_0
[2026-01-08 03:56:13] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 08:48 start_atlas.sh
[2026-01-08 03:56:13] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 08:48 shared
[2026-01-08 03:56:13] -rw-r--r--. 2 boincer umatlas    592395 Jan  7 08:48 input.tar.gz
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas         0 Jan  7 08:48 boinc_lockfile
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 16:30 pandaJob.out
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas        57 Jan  7 16:30 setup.sh.local
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas    989785 Jan  7 16:30 agis_schedconf.cvmfs.json
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas 220564798 Jan  8 02:29 HITS.47898826._007623.pool.root.1
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas       532 Jan  8 02:29 boinc_task_state.xml
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas      1042 Jan  8 02:30 memory_monitor_summary.json
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas   1516240 Jan  8 02:31 agis_ddmendpoints.agis.ALL.json
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas    703306 Jan  8 02:31 log.47898826._007623.job.log.tgz.1
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas      7816 Jan  8 02:32 heartbeat.json
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas        96 Jan  8 02:32 pilot_heartbeat.json
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas      4824 Jan  8 02:33 pilotlog.txt
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas   4198174 Jan  8 02:33 log.47898826._007623.job.log.1
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas       357 Jan  8 02:33 output.list
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas       620 Jan  8 02:33 runtime_log
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas   4925440 Jan  8 02:33 result.tar.gz
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas      9423 Jan  8 02:33 runtime_log.err
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas       784 Jan  8 02:33 033LDmvPix8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV2hKDm58L8Jn.diag
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas      6523 Jan  8 03:56 init_data.xml
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas        29 Jan  8 03:56 wrapper_checkpoint.txt
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 03:56 boinc_mmap_file
[2026-01-08 03:56:13] -rw-r--r--. 1 boincer umatlas     23737 Jan  8 03:56 stderr.txt
[2026-01-08 03:56:13] HITS file was successfully produced:
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas 220564798 Jan  8 02:29 shared/HITS.pool.root.1
[2026-01-08 03:56:13]  *** Contents of shared directory: ***
[2026-01-08 03:56:13] total 441684
[2026-01-08 03:56:13] -rw-r--r--. 3 boincer umatlas 226176312 Jan  7 08:48 ATLAS.root_0
[2026-01-08 03:56:13] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 08:48 start_atlas.sh
[2026-01-08 03:56:13] -rw-r--r--. 2 boincer umatlas    592395 Jan  7 08:48 input.tar.gz
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas 220564798 Jan  8 02:29 HITS.pool.root.1
[2026-01-08 03:56:13] -rw-------. 1 boincer umatlas   4925440 Jan  8 02:33 result.tar.gz
03:56:15 (2375473): run_atlas exited; CPU time 113917.303317
03:56:15 (2375473): called boinc_finish(0)

</stderr_txt>
]]>

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