Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:12:41 (412070): wrapper (7.7.26015): starting
08:12:41 (412070): wrapper: running run_atlas (--nthreads 12)
[2026-01-07 08:12:41] Arguments: --nthreads 12
[2026-01-07 08:12:41] Threads: 12
[2026-01-07 08:12:41] Checking for CVMFS
[2026-01-07 08:12:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 08:12:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 08:12:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 08:12:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 08:12:42] 2.13.3.0 7109 90552 420312 154868 0 507 17803133 21042177 12334 16776704 0 369012747 99.462 493659891 31920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 08:12:42] CVMFS is ok
[2026-01-07 08:12:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 08:12:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 08:12:42] Further information can be found at the LHC@home message board.
[2026-01-07 08:12:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 08:12:42] Checking for apptainer binary...
[2026-01-07 08:12:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 08:12:42] Running /usr/bin/apptainer --version
[2026-01-07 08:12:42] apptainer version 1.4.5-2.el9
[2026-01-07 08:12:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 08:12:42] c-16-11.aglt2.org
[2026-01-07 08:12:42] apptainer works
[2026-01-07 08:12:42] Set ATHENA_PROC_NUMBER=12
[2026-01-07 08:12:42] Set ATHENA_CORE_NUMBER=12
[2026-01-07 08:12:42] Starting ATLAS job with PandaID=6961934011
[2026-01-07 08:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:30:08 (2375472): wrapper (7.7.26015): starting
16:30:08 (2375472): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 16:30:08] Arguments: --nthreads 8
[2026-01-07 16:30:08] Threads: 8
[2026-01-07 16:30:08] This job has been restarted, cleaning up previous attempt
[2026-01-07 16:30:08] Checking for CVMFS
[2026-01-07 16:30:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 16:30:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 16:30:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 16:30:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 16:30:10] 2.13.3.0 7109 91049 408880 154880 0 110 14508199 21042176 14443 16776704 0 371443153 99.461 497975800 31850 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 16:30:10] CVMFS is ok
[2026-01-07 16:30:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 16:30:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 16:30:10] Further information can be found at the LHC@home message board.
[2026-01-07 16:30:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 16:30:10] Checking for apptainer binary...
[2026-01-07 16:30:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 16:30:10] Running /usr/bin/apptainer --version
[2026-01-07 16:30:11] apptainer version 1.4.5-2.el9
[2026-01-07 16:30:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 16:30:12] c-16-11.aglt2.org
[2026-01-07 16:30:12] apptainer works
[2026-01-07 16:30:12] Set ATHENA_PROC_NUMBER=8
[2026-01-07 16:30:12] Set ATHENA_CORE_NUMBER=8
[2026-01-07 16:30:12] Starting ATLAS job with PandaID=6961934011
[2026-01-07 16:30:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 16:23:47]  *** The last 200 lines of the pilot log: ***
[2026-01-08 16:23:47] 2026-01-08 21:23:04,359 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6961934011/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 16:23:47] 2026-01-08 21:23:04,391 | INFO     | extracted standard info from prmon json
[2026-01-08 16:23:47] 2026-01-08 21:23:04,391 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 16:23:47] 2026-01-08 21:23:04,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 16:23:47] 2026-01-08 21:23:04,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 16:23:47] 2026-01-08 21:23:04,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 16:23:47] 2026-01-08 21:23:04,685 | INFO     | fitting pss+swap vs Time
[2026-01-08 16:23:47] 2026-01-08 21:23:04,690 | INFO     | sum of square deviations: 861840788380.3071
[2026-01-08 16:23:47] 2026-01-08 21:23:05,074 | INFO     | monitor loop #4595: job 0:6961934011 is in state 'finished'
[2026-01-08 16:23:47] 2026-01-08 21:23:05,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:23:47] 2026-01-08 21:23:05,103 | INFO     | sum of deviations: 757086162455.1665
[2026-01-08 16:23:47] 2026-01-08 21:23:05,108 | INFO     | mean x: 1767864406.452347
[2026-01-08 16:23:47] 2026-01-08 21:23:05,108 | INFO     | mean y: 2526322.495021337
[2026-01-08 16:23:47] 2026-01-08 21:23:05,109 | INFO     | intersect: -1550458517.938728
[2026-01-08 16:23:47] 2026-01-08 21:23:05,124 | INFO     | chi2: 3.237312210183302
[2026-01-08 16:23:47] 2026-01-08 21:23:05,126 | INFO     | sum of square deviations: 852678927995.0769
[2026-01-08 16:23:47] 2026-01-08 21:23:05,361 | INFO     | time since job start (85928s) is within the limit (174528.0s)
[2026-01-08 16:23:47] 2026-01-08 21:23:05,670 | INFO     | sum of deviations: 845595167605.2771
[2026-01-08 16:23:47] 2026-01-08 21:23:05,719 | INFO     | mean x: 1767864253.9543183
[2026-01-08 16:23:47] 2026-01-08 21:23:05,719 | INFO     | mean y: 2527791.441827266
[2026-01-08 16:23:47] 2026-01-08 21:23:05,720 | INFO     | intersect: -1750649660.287707
[2026-01-08 16:23:47] 2026-01-08 21:23:05,722 | INFO     | chi2: 2.54816998046045
[2026-01-08 16:23:47] 2026-01-08 21:23:05,722 | INFO     | current chi2=2.54816998046045 (change=21.287481249262388 %)
[2026-01-08 16:23:47] 2026-01-08 21:23:05,722 | INFO     | right removable region: 1400
[2026-01-08 16:23:47] 2026-01-08 21:23:05,757 | INFO     | sum of square deviations: 852678368258.1676
[2026-01-08 16:23:47] 2026-01-08 21:23:06,461 | INFO     | sum of deviations: 415835396824.1935
[2026-01-08 16:23:47] 2026-01-08 21:23:06,462 | INFO     | mean x: 1767864558.955032
[2026-01-08 16:23:47] 2026-01-08 21:23:06,462 | INFO     | mean y: 2531997.7808708064
[2026-01-08 16:23:47] 2026-01-08 21:23:06,462 | INFO     | intersect: -859622699.4307197
[2026-01-08 16:23:47] 2026-01-08 21:23:06,500 | INFO     | chi2: 0.9254436820626507
[2026-01-08 16:23:47] 2026-01-08 21:23:06,501 | INFO     | current chi2=0.9254436820626507 (change=71.4132087985962 %)
[2026-01-08 16:23:47] 2026-01-08 21:23:06,503 | INFO     | sum of square deviations: 843581026808.5902
[2026-01-08 16:23:47] 2026-01-08 21:23:07,255 | INFO     | sum of deviations: 336291124601.4761
[2026-01-08 16:23:47] 2026-01-08 21:23:07,256 | INFO     | mean x: 1767864711.4584527
[2026-01-08 16:23:47] 2026-01-08 21:23:07,256 | INFO     | mean y: 2533330.146131805
[2026-01-08 16:23:47] 2026-01-08 21:23:07,256 | INFO     | intersect: -702220799.0556431
[2026-01-08 16:23:47] 2026-01-08 21:23:07,300 | INFO     | chi2: 0.8093564033837524
[2026-01-08 16:23:47] 2026-01-08 21:23:07,301 | INFO     | current chi2=0.8093564033837524 (change=12.543959284498035 %)
[2026-01-08 16:23:47] 2026-01-08 21:23:07,301 | INFO     | left removable region: 20
[2026-01-08 16:23:47] 2026-01-08 21:23:07,346 | INFO     | sum of square deviations: 814906216340.8865
[2026-01-08 16:23:47] 2026-01-08 21:23:07,431 | INFO     | time since job start (85930s) is within the limit (174528.0s)
[2026-01-08 16:23:47] 2026-01-08 21:23:07,689 | INFO     | monitor loop #4596: job 0:6961934011 is in state 'finished'
[2026-01-08 16:23:47] 2026-01-08 21:23:07,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:23:47] 2026-01-08 21:23:07,845 | INFO     | sum of deviations: 354892079050.174
[2026-01-08 16:23:47] 2026-01-08 21:23:07,846 | INFO     | mean x: 1767864833.4608696
[2026-01-08 16:23:47] 2026-01-08 21:23:07,869 | INFO     | mean y: 2536028.938405797
[2026-01-08 16:23:47] 2026-01-08 21:23:07,869 | INFO     | intersect: -767370021.1636431
[2026-01-08 16:23:47] 2026-01-08 21:23:07,871 | INFO     | chi2: 0.08220172249902492
[2026-01-08 16:23:47] 2026-01-08 21:23:07,872 | INFO     | current memory leak: 0.44 B/s (using 1380 data points, chi2=0.08)
[2026-01-08 16:23:47] 2026-01-08 21:23:07,897 | INFO     | could have reported an average CPU frequency of 2896 MHz (50 samples)
[2026-01-08 16:23:47] 2026-01-08 21:23:07,898 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2026-01-08 16:23:47] 2026-01-08 21:23:07,898 | INFO     | ..............................
[2026-01-08 16:23:47] 2026-01-08 21:23:07,898 | INFO     | . Timing measurements:
[2026-01-08 16:23:47] 2026-01-08 21:23:07,898 | INFO     | . get job = 0 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,898 | INFO     | . initial setup = 5 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,898 | INFO     | . payload setup = 22 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,899 | INFO     | . stage-in = 1 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,899 | INFO     | . payload execution = 85789 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,899 | INFO     | . stage-out = 6 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,899 | INFO     | . log creation = 1 s
[2026-01-08 16:23:47] 2026-01-08 21:23:07,899 | INFO     | ..............................
[2026-01-08 16:23:47] 2026-01-08 21:23:09,650 | INFO     | 
[2026-01-08 16:23:47] 2026-01-08 21:23:09,650 | INFO     | job summary report
[2026-01-08 16:23:47] 2026-01-08 21:23:09,650 | INFO     | --------------------------------------------------
[2026-01-08 16:23:47] 2026-01-08 21:23:09,650 | INFO     | PanDA job id: 6961934011
[2026-01-08 16:23:47] 2026-01-08 21:23:09,650 | INFO     | task id: 47898826
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | errors: (none)
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | pilot state: finished 
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | transexitcode: 0
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | exeerrorcode: 0
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | exeerrordiag: 
[2026-01-08 16:23:47] 2026-01-08 21:23:09,651 | INFO     | exitcode: 0
[2026-01-08 16:23:47] 2026-01-08 21:23:09,652 | INFO     | exitmsg: OK
[2026-01-08 16:23:47] 2026-01-08 21:23:09,652 | INFO     | cpuconsumptiontime: 115089 s
[2026-01-08 16:23:47] 2026-01-08 21:23:09,652 | INFO     | nevents: 400
[2026-01-08 16:23:47] 2026-01-08 21:23:09,652 | INFO     | neventsw: 0
[2026-01-08 16:23:47] 2026-01-08 21:23:09,652 | INFO     | pid: 2398775
[2026-01-08 16:23:47] 2026-01-08 21:23:09,652 | INFO     | pgrp: 2398775
[2026-01-08 16:23:47] 2026-01-08 21:23:09,653 | INFO     | corecount: 8
[2026-01-08 16:23:47] 2026-01-08 21:23:09,653 | INFO     | event service: False
[2026-01-08 16:23:47] 2026-01-08 21:23:09,653 | INFO     | sizes: {0: 2283085, 1: 2283770, 2: 2283969, 3: 2283969, 14: 2283997, 21: 2284287, 25: 2284443, 85818: 2347250, 85826: 2356248, 85830: 2356304, 85888: 2356498}
[2026-01-08 16:23:47] 2026-01-08 21:23:09,653 | INFO     | --------------------------------------------------
[2026-01-08 16:23:47] 2026-01-08 21:23:09,653 | INFO     | 
[2026-01-08 16:23:47] 2026-01-08 21:23:09,653 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 16:23:47] 2026-01-08 21:23:09,958 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,958 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,958 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,958 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,961 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 16:23:47] 2026-01-08 21:23:09,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,961 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 16:23:47] 2026-01-08 21:23:09,961 | INFO     | job 6961934011 has completed (purged errors)
[2026-01-08 16:23:47] 2026-01-08 21:23:09,961 | INFO     | overall cleanup function is called
[2026-01-08 16:23:47] 2026-01-08 21:23:11,001 | INFO     | --- collectZombieJob: --- 10, [2398775]
[2026-01-08 16:23:47] 2026-01-08 21:23:11,001 | INFO     | zombie collector waiting for pid 2398775
[2026-01-08 16:23:47] 2026-01-08 21:23:11,001 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 16:23:47] 2026-01-08 21:23:11,001 | INFO     | collected zombie processes
[2026-01-08 16:23:47] 2026-01-08 21:23:11,002 | INFO     | will attempt to kill all subprocesses of pid=2398775
[2026-01-08 16:23:47] 2026-01-08 21:23:11,199 | INFO     | PID=2383973 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 16:23:47] 2026-01-08 21:23:11,200 | INFO     | .. there are 41 such processes running
[2026-01-08 16:23:47] 2026-01-08 21:23:13,008 | INFO     | process IDs to be killed: [2398775] (in reverse order)
[2026-01-08 16:23:47] 2026-01-08 21:23:13,659 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 16:23:47] 2026-01-08 21:23:13,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 16:23:47] 2026-01-08 21:23:13,869 | INFO     | did not find any defunct processes belonging to 2398775
[2026-01-08 16:23:47] 2026-01-08 21:23:14,081 | INFO     | did not find any defunct processes belonging to 2398775
[2026-01-08 16:23:47] 2026-01-08 21:23:14,081 | INFO     | ready for new job
[2026-01-08 16:23:47] 2026-01-08 21:23:14,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 16:23:47] 2026-01-08 21:23:14,134 | INFO     | ***************************************
[2026-01-08 16:23:47] 2026-01-08 21:23:14,135 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 16:23:47] 2026-01-08 21:23:14,152 | INFO     | ***************************************
[2026-01-08 16:23:47] 2026-01-08 21:23:14,152 | INFO     | 
[2026-01-08 16:23:47] 2026-01-08 21:23:14,154 | INFO     | architecture information:
[2026-01-08 16:23:47] 2026-01-08 21:23:14,197 | INFO     | executing command: cat /etc/os-release
[2026-01-08 16:23:47] 2026-01-08 21:23:14,454 | INFO     | cat /etc/os-release:
[2026-01-08 16:23:47] NAME="CentOS Linux"
[2026-01-08 16:23:47] VERSION="7 (Core)"
[2026-01-08 16:23:47] ID="centos"
[2026-01-08 16:23:47] ID_LIKE="rhel fedora"
[2026-01-08 16:23:47] VERSION_ID="7"
[2026-01-08 16:23:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 16:23:47] ANSI_COLOR="0;31"
[2026-01-08 16:23:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 16:23:47] HOME_URL="https://www.centos.org/"
[2026-01-08 16:23:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 16:23:47] 
[2026-01-08 16:23:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 16:23:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 16:23:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 16:23:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 16:23:47] 
[2026-01-08 16:23:47] 2026-01-08 21:23:14,455 | INFO     | ***************************************
[2026-01-08 16:23:47] 2026-01-08 21:23:14,959 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 16:23:47] 2026-01-08 21:23:15,122 | INFO     | sufficient remaining disk space (52950990848 B)
[2026-01-08 16:23:47] 2026-01-08 21:23:15,123 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 16:23:47] 2026-01-08 21:23:15,123 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 16:23:47] 2026-01-08 21:23:15,123 | INFO     | update_server=False
[2026-01-08 16:23:47] 2026-01-08 21:23:15,123 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 16:23:47] 2026-01-08 21:23:15,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 16:23:47] 2026-01-08 21:23:15,330 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 16:23:47] 2026-01-08 21:23:15,334 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 16:23:47] 2026-01-08 21:23:15,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 16:23:47] 2026-01-08 21:23:15,335 | INFO     | will abort loop
[2026-01-08 16:23:47] 2026-01-08 21:23:15,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 16:23:47] 2026-01-08 21:23:15,759 | INFO     | all data control threads have been joined
[2026-01-08 16:23:47] 2026-01-08 21:23:15,829 | INFO     | all payload control threads have been joined
[2026-01-08 16:23:47] 2026-01-08 21:23:16,129 | INFO     | [job] retrieve thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,154 | INFO     | [job] queue monitor thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,340 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,351 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,352 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,356 | INFO     | [job] job monitor thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,361 | INFO     | [job] validate thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,368 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,527 | INFO     | all job control threads have been joined
[2026-01-08 16:23:47] 2026-01-08 21:23:16,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 16:23:47] 2026-01-08 21:23:16,765 | INFO     | [data] control thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:16,835 | INFO     | [payload] control thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:17,018 | INFO     | [data] copytool_in thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:17,162 | INFO     | [payload] failed_post thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:17,533 | INFO     | [job] control thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:17,625 | INFO     | [payload] validate_post thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:17,760 | INFO     | [data] copytool_out thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:20,763 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 16:23:47] 2026-01-08 21:23:35,298 | INFO     | [monitor] cgroup control has ended
[2026-01-08 16:23:47] 2026-01-08 21:23:36,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178392532800)>', '<ExcThread(monitor, started 140177523599104)>']
[2026-01-08 16:23:47] 2026-01-08 21:23:41,592 | INFO     | all workflow threads have been joined
[2026-01-08 16:23:47] 2026-01-08 21:23:41,598 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 16:23:47] 2026-01-08 21:23:41,598 | INFO     | traces error code: 0
[2026-01-08 16:23:47] 2026-01-08 21:23:41,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 16:23:47] 2026-01-08 21:23:44,165 | INFO     | PID=2383973 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 16:23:47] 2026-01-08 21:23:44,166 | INFO     | .. there are 41 such processes running
[2026-01-08 16:23:47] 2026-01-08 21:23:44,167 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 16:23:47] 2026-01-08 21:23:44,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 16:23:47] 2026-01-08 21:23:44,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 16:23:47] 2026-01-08 21:23:44,167 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 16:23:47] 2026-01-08 21:23:44,167 | INFO     | [monitor] control thread has ended
[2026-01-08 16:23:47] 2026-01-08 21:23:44,440 [wrapper] ==== pilot stdout END ====
[2026-01-08 16:23:47] 2026-01-08 21:23:44,462 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 16:23:47] 2026-01-08 21:23:44,489 [wrapper] pilotpid: 2383973
[2026-01-08 16:23:47] 2026-01-08 21:23:44,515 [wrapper] Pilot exit status: 0
[2026-01-08 16:23:47] 2026-01-08 21:23:44,807 [wrapper] pandaids: 6961934011 6961934011
[2026-01-08 16:23:47] 2026-01-08 21:23:45,045 [wrapper] cleanup supervisor_pilot 1662423 2383974
[2026-01-08 16:23:47] 2026-01-08 21:23:45,097 [wrapper] Test setup, not cleaning
[2026-01-08 16:23:47] 2026-01-08 21:23:45,153 [wrapper] apfmon messages muted
[2026-01-08 16:23:47] 2026-01-08 21:23:45,196 [wrapper] ==== wrapper stdout END ====
[2026-01-08 16:23:47] 2026-01-08 21:23:45,225 [wrapper] ==== wrapper stderr END ====
[2026-01-08 16:23:47]  *** Error codes and diagnostics ***
[2026-01-08 16:23:47]     "exeErrorCode": 0,
[2026-01-08 16:23:47]     "exeErrorDiag": "",
[2026-01-08 16:23:47]     "pilotErrorCode": 0,
[2026-01-08 16:23:47]     "pilotErrorDiag": "",
[2026-01-08 16:23:47]  *** Listing of results directory ***
[2026-01-08 16:23:47] total 676944
[2026-01-08 16:23:47] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 08:00 pilot3.tar.gz
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 08:05 queuedata.json
[2026-01-08 16:23:47] -rwx------. 1 boincer umatlas     36322 Jan  7 08:05 runpilot2-wrapper.sh
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas       100 Jan  7 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 16:23:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 08:12 run_atlas
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas       105 Jan  7 08:12 job.xml
[2026-01-08 16:23:47] -rw-r--r--. 3 boincer umatlas 222746580 Jan  7 08:12 EVNT.47898824._000126.pool.root.1
[2026-01-08 16:23:47] -rw-r--r--. 3 boincer umatlas 222746580 Jan  7 08:12 ATLAS.root_0
[2026-01-08 16:23:47] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 08:12 start_atlas.sh
[2026-01-08 16:23:47] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 08:12 shared
[2026-01-08 16:23:47] -rw-r--r--. 2 boincer umatlas    592405 Jan  7 08:12 input.tar.gz
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas         0 Jan  7 08:12 boinc_lockfile
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas      2515 Jan  7 16:30 pandaJob.out
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas        57 Jan  7 16:30 setup.sh.local
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas    989785 Jan  7 16:30 agis_schedconf.cvmfs.json
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas      6525 Jan  8 16:19 init_data.xml
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas 221258539 Jan  8 16:20 HITS.47898826._007502.pool.root.1
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas       533 Jan  8 16:20 boinc_task_state.xml
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas      1056 Jan  8 16:21 memory_monitor_summary.json
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas   1516240 Jan  8 16:22 agis_ddmendpoints.agis.ALL.json
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas   1311433 Jan  8 16:22 log.47898826._007502.job.log.tgz.1
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas      7823 Jan  8 16:23 heartbeat.json
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 16:23 boinc_mmap_file
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas        30 Jan  8 16:23 wrapper_checkpoint.txt
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas        96 Jan  8 16:23 pilot_heartbeat.json
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas       823 Jan  8 16:23 pilotlog.txt
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas   9947683 Jan  8 16:23 log.47898826._007502.job.log.1
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas       357 Jan  8 16:23 output.list
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas       620 Jan  8 16:23 runtime_log
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas  11274240 Jan  8 16:23 result.tar.gz
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas       783 Jan  8 16:23 trxMDmEPix8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm71hKDmfMq6xn.diag
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas      9423 Jan  8 16:23 runtime_log.err
[2026-01-08 16:23:47] -rw-r--r--. 1 boincer umatlas     23437 Jan  8 16:23 stderr.txt
[2026-01-08 16:23:47] HITS file was successfully produced:
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas 221258539 Jan  8 16:20 shared/HITS.pool.root.1
[2026-01-08 16:23:47]  *** Contents of shared directory: ***
[2026-01-08 16:23:47] total 445220
[2026-01-08 16:23:47] -rw-r--r--. 3 boincer umatlas 222746580 Jan  7 08:12 ATLAS.root_0
[2026-01-08 16:23:47] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 08:12 start_atlas.sh
[2026-01-08 16:23:47] -rw-r--r--. 2 boincer umatlas    592405 Jan  7 08:12 input.tar.gz
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas 221258539 Jan  8 16:20 HITS.pool.root.1
[2026-01-08 16:23:47] -rw-------. 1 boincer umatlas  11274240 Jan  8 16:23 result.tar.gz
16:23:49 (2375472): run_atlas exited; CPU time 120592.097398
16:23:49 (2375472): called boinc_finish(0)

</stderr_txt>
]]>

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