Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:26 (4032736): wrapper (7.7.26015): starting
08:31:26 (4032736): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 08:31:26] Arguments: --nthreads 8
[2026-01-07 08:31:26] Threads: 8
[2026-01-07 08:31:26] Checking for CVMFS
[2026-01-07 08:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 08:31:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 08:31:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 08:31:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 08:31:29] 2.13.3.0 6048 90460 337572 154869 0 63 12666602 25181185 11212 16776704 0 551023067 99.619 505415291 27695 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 08:31:29] CVMFS is ok
[2026-01-07 08:31:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 08:31:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 08:31:29] Further information can be found at the LHC@home message board.
[2026-01-07 08:31:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 08:31:29] Checking for apptainer binary...
[2026-01-07 08:31:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 08:31:29] Running /usr/bin/apptainer --version
[2026-01-07 08:31:29] apptainer version 1.4.5-2.el9
[2026-01-07 08:31:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 08:31:30] c-16-35.aglt2.org
[2026-01-07 08:31:30] apptainer works
[2026-01-07 08:31:30] Set ATHENA_PROC_NUMBER=8
[2026-01-07 08:31:30] Set ATHENA_CORE_NUMBER=8
[2026-01-07 08:31:30] Starting ATLAS job with PandaID=6961933691
[2026-01-07 08:31:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:06 (4032736): BOINC client no longer exists - exiting
11:00:06 (4032736): timer handler: client dead, exiting
11:10:37 (644411): wrapper (7.7.26015): starting
11:10:37 (644411): wrapper: running run_atlas (--nthreads 9)
[2026-01-07 11:10:37] Arguments: --nthreads 9
[2026-01-07 11:10:37] Threads: 9
[2026-01-07 11:10:37] This job has been restarted, cleaning up previous attempt
[2026-01-07 11:10:37] Checking for CVMFS
[2026-01-07 11:10:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 11:10:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 11:10:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 11:10:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 11:10:39] 2.13.3.0 6048 90619 341468 154872 1 318 16508144 25181184 12489 16776704 0 551582175 99.618 506938266 27713 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 11:10:39] CVMFS is ok
[2026-01-07 11:10:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 11:10:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 11:10:39] Further information can be found at the LHC@home message board.
[2026-01-07 11:10:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 11:10:39] Checking for apptainer binary...
[2026-01-07 11:10:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 11:10:39] Running /usr/bin/apptainer --version
[2026-01-07 11:10:40] apptainer version 1.4.5-2.el9
[2026-01-07 11:10:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 11:10:41] c-16-35.aglt2.org
[2026-01-07 11:10:41] apptainer works
[2026-01-07 11:10:41] Set ATHENA_PROC_NUMBER=9
[2026-01-07 11:10:41] Set ATHENA_CORE_NUMBER=9
[2026-01-07 11:10:41] Starting ATLAS job with PandaID=6961933691
[2026-01-07 11:10:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 19:58:35]  *** The last 200 lines of the pilot log: ***
[2026-01-07 19:58:35] 2026-01-08 00:57:44,921 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-07 19:58:35] 2026-01-08 00:57:44,927 | INFO     | monitor loop #1706: job 0:6961933691 is in state 'finished'
[2026-01-07 19:58:35] 2026-01-08 00:57:44,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,006 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2667.6170625
[2026-01-07 19:58:35] 2026-01-08 00:57:45,045 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6961933691/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,065 | INFO     | extracted standard info from prmon json
[2026-01-07 19:58:35] 2026-01-08 00:57:45,065 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 19:58:35] 2026-01-08 00:57:45,065 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 19:58:35] 2026-01-08 00:57:45,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 19:58:35] 2026-01-08 00:57:45,066 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 19:58:35] 2026-01-08 00:57:45,107 | INFO     | fitting pss+swap vs Time
[2026-01-07 19:58:35] 2026-01-08 00:57:45,108 | INFO     | sum of square deviations: 42354742834.66804
[2026-01-07 19:58:35] 2026-01-08 00:57:45,124 | INFO     | sum of deviations: 99838804961.33582
[2026-01-07 19:58:35] 2026-01-08 00:57:45,125 | INFO     | mean x: 1767818072.6873786
[2026-01-07 19:58:35] 2026-01-08 00:57:45,125 | INFO     | mean y: 2537502.3747572815
[2026-01-07 19:58:35] 2026-01-08 00:57:45,125 | INFO     | intersect: -4164571821.252024
[2026-01-07 19:58:35] 2026-01-08 00:57:45,126 | INFO     | chi2: 3.83355637861696
[2026-01-07 19:58:35] 2026-01-08 00:57:45,127 | INFO     | sum of square deviations: 41133100194.55073
[2026-01-07 19:58:35] 2026-01-08 00:57:45,133 | INFO     | sum of deviations: 167393837203.9941
[2026-01-07 19:58:35] 2026-01-08 00:57:45,151 | INFO     | mean x: 1767817920.190196
[2026-01-07 19:58:35] 2026-01-08 00:57:45,151 | INFO     | mean y: 2545884.9588235295
[2026-01-07 19:58:35] 2026-01-08 00:57:45,151 | INFO     | intersect: -7191704578.511581
[2026-01-07 19:58:35] 2026-01-08 00:57:45,152 | INFO     | chi2: 2.315989148593948
[2026-01-07 19:58:35] 2026-01-08 00:57:45,153 | INFO     | current chi2=2.315989148593948 (change=39.58640698458981 %)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,153 | INFO     | sum of square deviations: 39935116222.190315
[2026-01-07 19:58:35] 2026-01-08 00:57:45,195 | INFO     | sum of deviations: 164396519683.8674
[2026-01-07 19:58:35] 2026-01-08 00:57:45,195 | INFO     | mean x: 1767817767.6891088
[2026-01-07 19:58:35] 2026-01-08 00:57:45,195 | INFO     | mean y: 2545503.394059406
[2026-01-07 19:58:35] 2026-01-08 00:57:45,195 | INFO     | intersect: -7274836308.30343
[2026-01-07 19:58:35] 2026-01-08 00:57:45,196 | INFO     | chi2: 2.3163517355592766
[2026-01-07 19:58:35] 2026-01-08 00:57:45,196 | INFO     | current chi2=2.3163517355592766 (change=-0.015655814516613274 %)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,196 | INFO     | right removable region: 504
[2026-01-07 19:58:35] 2026-01-08 00:57:45,197 | INFO     | sum of square deviations: 41132946839.78271
[2026-01-07 19:58:35] 2026-01-08 00:57:45,204 | INFO     | sum of deviations: -15737275160.017601
[2026-01-07 19:58:35] 2026-01-08 00:57:45,204 | INFO     | mean x: 1767818225.1941175
[2026-01-07 19:58:35] 2026-01-08 00:57:45,205 | INFO     | mean y: 2551891.060784314
[2026-01-07 19:58:35] 2026-01-08 00:57:45,205 | INFO     | intersect: 678910965.2389172
[2026-01-07 19:58:35] 2026-01-08 00:57:45,206 | INFO     | chi2: 1.7265951444673382
[2026-01-07 19:58:35] 2026-01-08 00:57:45,206 | INFO     | current chi2=1.7265951444673382 (change=54.96100816208042 %)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,207 | INFO     | sum of square deviations: 39934872219.84933
[2026-01-07 19:58:35] 2026-01-08 00:57:45,213 | INFO     | sum of deviations: -48798944502.504944
[2026-01-07 19:58:35] 2026-01-08 00:57:45,213 | INFO     | mean x: 1767818377.7009902
[2026-01-07 19:58:35] 2026-01-08 00:57:45,214 | INFO     | mean y: 2556094.00990099
[2026-01-07 19:58:35] 2026-01-08 00:57:45,215 | INFO     | intersect: 2162765107.0503945
[2026-01-07 19:58:35] 2026-01-08 00:57:45,216 | INFO     | chi2: 1.5788321230397298
[2026-01-07 19:58:35] 2026-01-08 00:57:45,216 | INFO     | current chi2=1.5788321230397298 (change=8.558058436634488 %)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,216 | INFO     | left removable region: 20
[2026-01-07 19:58:35] 2026-01-08 00:57:45,217 | INFO     | sum of square deviations: 35157253147.55993
[2026-01-07 19:58:35] 2026-01-08 00:57:45,223 | INFO     | sum of deviations: 7643212520.805787
[2026-01-07 19:58:35] 2026-01-08 00:57:45,224 | INFO     | mean x: 1767818347.2004132
[2026-01-07 19:58:35] 2026-01-08 00:57:45,224 | INFO     | mean y: 2565873.97107438
[2026-01-07 19:58:35] 2026-01-08 00:57:45,224 | INFO     | intersect: -381759126.31041574
[2026-01-07 19:58:35] 2026-01-08 00:57:45,225 | INFO     | chi2: 0.018813074517989123
[2026-01-07 19:58:35] 2026-01-08 00:57:45,225 | INFO     | current memory leak: 0.22 B/s (using 484 data points, chi2=0.02)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,226 | INFO     | could have reported an average CPU frequency of 2686 MHz (21 samples)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,226 | INFO     | ..............................
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . Timing measurements:
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . get job = 0 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . initial setup = 2 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . payload setup = 31 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . stage-in = 0 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . payload execution = 31445 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . stage-out = 7 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,227 | INFO     | . log creation = 1 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,228 | INFO     | ..............................
[2026-01-07 19:58:35] 2026-01-08 00:57:45,481 | INFO     | 
[2026-01-07 19:58:35] 2026-01-08 00:57:45,481 | INFO     | job summary report
[2026-01-07 19:58:35] 2026-01-08 00:57:45,481 | INFO     | --------------------------------------------------
[2026-01-07 19:58:35] 2026-01-08 00:57:45,482 | INFO     | PanDA job id: 6961933691
[2026-01-07 19:58:35] 2026-01-08 00:57:45,482 | INFO     | task id: 47898826
[2026-01-07 19:58:35] 2026-01-08 00:57:45,482 | INFO     | errors: (none)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,482 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 19:58:35] 2026-01-08 00:57:45,482 | INFO     | pilot state: finished 
[2026-01-07 19:58:35] 2026-01-08 00:57:45,506 | INFO     | transexitcode: 0
[2026-01-07 19:58:35] 2026-01-08 00:57:45,506 | INFO     | exeerrorcode: 0
[2026-01-07 19:58:35] 2026-01-08 00:57:45,506 | INFO     | exeerrordiag: 
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | exitcode: 0
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | exitmsg: OK
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | cpuconsumptiontime: 75029 s
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | nevents: 400
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | neventsw: 0
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | pid: 668383
[2026-01-07 19:58:35] 2026-01-08 00:57:45,507 | INFO     | pgrp: 668383
[2026-01-07 19:58:35] 2026-01-08 00:57:45,508 | INFO     | corecount: 9
[2026-01-07 19:58:35] 2026-01-08 00:57:45,508 | INFO     | event service: False
[2026-01-07 19:58:35] 2026-01-08 00:57:45,508 | INFO     | sizes: {0: 2283737, 1: 2283936, 2: 2283936, 12: 2283964, 23: 2284282, 31481: 2322562, 31482: 2322689, 31490: 2331743, 31491: 2331799, 31533: 2331993}
[2026-01-07 19:58:35] 2026-01-08 00:57:45,508 | INFO     | --------------------------------------------------
[2026-01-07 19:58:35] 2026-01-08 00:57:45,508 | INFO     | 
[2026-01-07 19:58:35] 2026-01-08 00:57:45,508 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-07 19:58:35] 2026-01-08 00:57:45,619 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,620 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,620 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,620 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,620 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | job 6961933691 has completed (purged errors)
[2026-01-07 19:58:35] 2026-01-08 00:57:45,622 | INFO     | overall cleanup function is called
[2026-01-07 19:58:35] 2026-01-08 00:57:46,677 | INFO     | --- collectZombieJob: --- 10, [668383]
[2026-01-07 19:58:35] 2026-01-08 00:57:46,677 | INFO     | zombie collector waiting for pid 668383
[2026-01-07 19:58:35] 2026-01-08 00:57:46,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 19:58:35] 2026-01-08 00:57:46,678 | INFO     | collected zombie processes
[2026-01-07 19:58:35] 2026-01-08 00:57:46,678 | INFO     | will attempt to kill all subprocesses of pid=668383
[2026-01-07 19:58:35] 2026-01-08 00:57:48,046 | INFO     | process IDs to be killed: [668383] (in reverse order)
[2026-01-07 19:58:35] 2026-01-08 00:57:48,381 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 19:58:35] 2026-01-08 00:57:48,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 19:58:35] 2026-01-08 00:57:48,412 | INFO     | did not find any defunct processes belonging to 668383
[2026-01-07 19:58:35] 2026-01-08 00:57:48,428 | INFO     | did not find any defunct processes belonging to 668383
[2026-01-07 19:58:35] 2026-01-08 00:57:48,428 | INFO     | ready for new job
[2026-01-07 19:58:35] 2026-01-08 00:57:48,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 19:58:35] 2026-01-08 00:57:48,432 | INFO     | ***************************************
[2026-01-07 19:58:35] 2026-01-08 00:57:48,432 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 19:58:35] 2026-01-08 00:57:48,432 | INFO     | ***************************************
[2026-01-07 19:58:35] 2026-01-08 00:57:48,432 | INFO     | 
[2026-01-07 19:58:35] 2026-01-08 00:57:48,435 | INFO     | architecture information:
[2026-01-07 19:58:35] 2026-01-08 00:57:48,435 | INFO     | executing command: cat /etc/os-release
[2026-01-07 19:58:35] 2026-01-08 00:57:48,477 | INFO     | cat /etc/os-release:
[2026-01-07 19:58:35] NAME="CentOS Linux"
[2026-01-07 19:58:35] VERSION="7 (Core)"
[2026-01-07 19:58:35] ID="centos"
[2026-01-07 19:58:35] ID_LIKE="rhel fedora"
[2026-01-07 19:58:35] VERSION_ID="7"
[2026-01-07 19:58:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 19:58:35] ANSI_COLOR="0;31"
[2026-01-07 19:58:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 19:58:35] HOME_URL="https://www.centos.org/"
[2026-01-07 19:58:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 19:58:35] 
[2026-01-07 19:58:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 19:58:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 19:58:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 19:58:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 19:58:35] 
[2026-01-07 19:58:35] 2026-01-08 00:57:48,478 | INFO     | ***************************************
[2026-01-07 19:58:35] 2026-01-08 00:57:48,981 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-07 19:58:35] 2026-01-08 00:57:49,043 | INFO     | sufficient remaining disk space (63570968576 B)
[2026-01-07 19:58:35] 2026-01-08 00:57:49,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 19:58:35] 2026-01-08 00:57:49,044 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 19:58:35] 2026-01-08 00:57:49,044 | INFO     | update_server=False
[2026-01-07 19:58:35] 2026-01-08 00:57:49,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 19:58:35] 2026-01-08 00:57:49,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 19:58:35] 2026-01-08 00:57:49,045 | INFO     | aborting loop
[2026-01-07 19:58:35] 2026-01-08 00:57:49,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 19:58:35] 2026-01-08 00:57:49,758 | INFO     | all data control threads have been joined
[2026-01-07 19:58:35] 2026-01-08 00:57:50,050 | INFO     | [job] retrieve thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,051 | INFO     | [job] job monitor thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,092 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,175 | INFO     | [payload] validate_post thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 19:58:35] 2026-01-08 00:57:50,275 | INFO     | [payload] failed_post thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,306 | INFO     | all job control threads have been joined
[2026-01-07 19:58:35] 2026-01-08 00:57:50,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 19:58:35] 2026-01-08 00:57:50,553 | INFO     | all payload control threads have been joined
[2026-01-07 19:58:35] 2026-01-08 00:57:50,712 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,722 | INFO     | [job] validate thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:50,764 | INFO     | [data] control thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,059 | INFO     | [data] copytool_out thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,233 | INFO     | [data] copytool_in thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,234 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,287 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,312 | INFO     | [job] control thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,505 | INFO     | [job] queue monitor thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:51,559 | INFO     | [payload] control thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:57:54,235 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 19:58:35] 2026-01-08 00:58:18,741 | INFO     | PID=653411 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-07 19:58:35] 2026-01-08 00:58:18,741 | INFO     | .. there are 27 such processes running
[2026-01-07 19:58:35] 2026-01-08 00:58:18,741 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 19:58:35] 2026-01-08 00:58:18,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 19:58:35] 2026-01-08 00:58:18,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 19:58:35] 2026-01-08 00:58:27,754 | INFO     | [monitor] cgroup control has ended
[2026-01-07 19:58:35] 2026-01-08 00:58:28,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140293310682944)>', '<ExcThread(monitor, started 140292195862272)>']
[2026-01-07 19:58:35] 2026-01-08 00:58:28,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 19:58:35] 2026-01-08 00:58:28,803 | INFO     | [monitor] control thread has ended
[2026-01-07 19:58:35] 2026-01-08 00:58:33,467 | INFO     | all workflow threads have been joined
[2026-01-07 19:58:35] 2026-01-08 00:58:33,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 19:58:35] 2026-01-08 00:58:33,468 | INFO     | traces error code: 0
[2026-01-07 19:58:35] 2026-01-08 00:58:33,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 19:58:35] 2026-01-08 00:58:34,470 [wrapper] ==== pilot stdout END ====
[2026-01-07 19:58:35] 2026-01-08 00:58:34,498 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 19:58:35] 2026-01-08 00:58:34,538 [wrapper] pilotpid: 653411
[2026-01-07 19:58:35] 2026-01-08 00:58:34,554 [wrapper] Pilot exit status: 0
[2026-01-07 19:58:35] 2026-01-08 00:58:34,732 [wrapper] pandaids: 6961933691 6961933691
[2026-01-07 19:58:35] 2026-01-08 00:58:34,943 [wrapper] cleanup supervisor_pilot 3771315 653412
[2026-01-07 19:58:35] 2026-01-08 00:58:34,947 [wrapper] Test setup, not cleaning
[2026-01-07 19:58:35] 2026-01-08 00:58:34,951 [wrapper] apfmon messages muted
[2026-01-07 19:58:35] 2026-01-08 00:58:34,954 [wrapper] ==== wrapper stdout END ====
[2026-01-07 19:58:35] 2026-01-08 00:58:34,957 [wrapper] ==== wrapper stderr END ====
[2026-01-07 19:58:35]  *** Error codes and diagnostics ***
[2026-01-07 19:58:35]     "exeErrorCode": 0,
[2026-01-07 19:58:35]     "exeErrorDiag": "",
[2026-01-07 19:58:35]     "pilotErrorCode": 0,
[2026-01-07 19:58:35]     "pilotErrorDiag": "",
[2026-01-07 19:58:35]  *** Listing of results directory ***
[2026-01-07 19:58:35] total 665828
[2026-01-07 19:58:35] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 08:00 pilot3.tar.gz
[2026-01-07 19:58:35] -rwx------. 1 boincer umatlas     36322 Jan  7 08:01 runpilot2-wrapper.sh
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 08:01 queuedata.json
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas       100 Jan  7 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 19:58:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 08:31 run_atlas
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas       105 Jan  7 08:31 job.xml
[2026-01-07 19:58:35] -rw-r--r--. 3 boincer umatlas 225866936 Jan  7 08:31 EVNT.47898824._000116.pool.root.1
[2026-01-07 19:58:35] -rw-r--r--. 3 boincer umatlas 225866936 Jan  7 08:31 ATLAS.root_0
[2026-01-07 19:58:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 08:31 start_atlas.sh
[2026-01-07 19:58:35] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 08:31 shared
[2026-01-07 19:58:35] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 08:31 input.tar.gz
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas         0 Jan  7 08:31 boinc_lockfile
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas      2513 Jan  7 11:10 pandaJob.out
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas        57 Jan  7 11:10 setup.sh.local
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas    989408 Jan  7 11:11 agis_schedconf.cvmfs.json
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas 217485796 Jan  7 19:54 HITS.47898826._007297.pool.root.1
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas       531 Jan  7 19:54 boinc_task_state.xml
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas      6611 Jan  7 19:55 init_data.xml
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas      1057 Jan  7 19:56 memory_monitor_summary.json
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas   1516240 Jan  7 19:56 agis_ddmendpoints.agis.ALL.json
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas    662138 Jan  7 19:57 log.47898826._007297.job.log.tgz.1
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas        96 Jan  7 19:57 pilot_heartbeat.json
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas      7842 Jan  7 19:57 heartbeat.json
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas      8192 Jan  7 19:58 boinc_mmap_file
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas        28 Jan  7 19:58 wrapper_checkpoint.txt
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas      4823 Jan  7 19:58 pilotlog.txt
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas   3673044 Jan  7 19:58 log.47898826._007297.job.log.1
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas       357 Jan  7 19:58 output.list
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas       620 Jan  7 19:58 runtime_log
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas   4352000 Jan  7 19:58 result.tar.gz
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas      9423 Jan  7 19:58 runtime_log.err
[2026-01-07 19:58:35] -rw-------. 1 boincer umatlas       788 Jan  7 19:58 1XmNDm2Kix8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJwhKDm5Y2tIo.diag
[2026-01-07 19:58:35] -rw-r--r--. 1 boincer umatlas     23488 Jan  7 19:58 stderr.txt
[2026-01-07 19:58:36] HITS file was successfully produced:
[2026-01-07 19:58:36] -rw-------. 1 boincer umatlas 217485796 Jan  7 19:54 shared/HITS.pool.root.1
[2026-01-07 19:58:36]  *** Contents of shared directory: ***
[2026-01-07 19:58:36] total 437820
[2026-01-07 19:58:36] -rw-r--r--. 3 boincer umatlas 225866936 Jan  7 08:31 ATLAS.root_0
[2026-01-07 19:58:36] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 08:31 start_atlas.sh
[2026-01-07 19:58:36] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 08:31 input.tar.gz
[2026-01-07 19:58:36] -rw-------. 1 boincer umatlas 217485796 Jan  7 19:54 HITS.pool.root.1
[2026-01-07 19:58:36] -rw-------. 1 boincer umatlas   4352000 Jan  7 19:58 result.tar.gz
19:58:37 (644411): run_atlas exited; CPU time 76369.980363
19:58:37 (644411): called boinc_finish(0)

</stderr_txt>
]]>

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