Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:27 (6608): wrapper (7.7.26015): starting
13:31:27 (6608): wrapper: running run_atlas (--nthreads 8)
[2025-12-27 13:31:27] Arguments: --nthreads 8
[2025-12-27 13:31:27] Threads: 8
[2025-12-27 13:31:27] Checking for CVMFS
[2025-12-27 13:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-27 13:31:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-27 13:31:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-27 13:31:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-27 13:31:28] 2.11.2.0 23418 121468 125796 154486 2 49 14747730 18432001 943 130560 0 85469403 99.985 4484239 29846 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-27 13:31:28] CVMFS is ok
[2025-12-27 13:31:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-27 13:31:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-27 13:31:28] Further information can be found at the LHC@home message board.
[2025-12-27 13:31:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-27 13:31:28] Checking for apptainer binary...
[2025-12-27 13:31:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-27 13:31:28] Running /usr/bin/apptainer --version
[2025-12-27 13:31:28] apptainer version 1.3.2-1.el7
[2025-12-27 13:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-27 13:31:29] c-206-24.aglt2.org
[2025-12-27 13:31:29] apptainer works
[2025-12-27 13:31:29] Set ATHENA_PROC_NUMBER=8
[2025-12-27 13:31:29] Set ATHENA_CORE_NUMBER=8
[2025-12-27 13:31:29] Starting ATLAS job with PandaID=6948705893
[2025-12-27 13:31:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-27 16:40:03]  *** The last 200 lines of the pilot log: ***
[2025-12-27 16:40:03] 2025-12-27 21:38:58,908 | INFO     | executing command: lscpu
[2025-12-27 16:40:03] 2025-12-27 21:38:58,932 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-27 16:40:03] 2025-12-27 21:38:59,196 | INFO     | time since job start (11237s) is within the limit (174528.0s)
[2025-12-27 16:40:03] 2025-12-27 21:39:00,343 | INFO     | PID=10615 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-27 16:40:03] 2025-12-27 21:39:00,343 | INFO     | .. there are 2 such processes running
[2025-12-27 16:40:03] 2025-12-27 21:39:01,272 | INFO     | monitor loop #845: job 0:6948705893 is in state 'finished'
[2025-12-27 16:40:03] 2025-12-27 21:39:01,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-27 16:40:03] 2025-12-27 21:39:01,344 | INFO     | time since job start (11239s) is within the limit (174528.0s)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,879 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-27 16:40:03] 2025-12-27 21:39:02,883 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2183.875
[2025-12-27 16:40:03] 2025-12-27 21:39:02,885 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6948705893/memory_monitor_summary.json (trf name=prmon)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,886 | INFO     | extracted standard info from prmon json
[2025-12-27 16:40:03] 2025-12-27 21:39:02,886 | INFO     | extracted standard memory fields from prmon json
[2025-12-27 16:40:03] 2025-12-27 21:39:02,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-27 16:40:03] 2025-12-27 21:39:02,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-27 16:40:03] 2025-12-27 21:39:02,887 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-27 16:40:03] 2025-12-27 21:39:02,890 | INFO     | fitting pss+swap vs Time
[2025-12-27 16:40:03] 2025-12-27 21:39:02,890 | INFO     | sum of square deviations: 1931608310.0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,891 | INFO     | sum of deviations: -4840575212.000001
[2025-12-27 16:40:03] 2025-12-27 21:39:02,891 | INFO     | mean x: 1766865908.5
[2025-12-27 16:40:03] 2025-12-27 21:39:02,891 | INFO     | mean y: 2523043.652173913
[2025-12-27 16:40:03] 2025-12-27 21:39:02,891 | INFO     | intersect: 4430256800.716494
[2025-12-27 16:40:03] 2025-12-27 21:39:02,892 | INFO     | chi2: 1.4109303578386754
[2025-12-27 16:40:03] 2025-12-27 21:39:02,892 | INFO     | sum of square deviations: 1778377530.0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,893 | INFO     | sum of deviations: -4588506864.000001
[2025-12-27 16:40:03] 2025-12-27 21:39:02,893 | INFO     | mean x: 1766865756.0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,893 | INFO     | mean y: 2523294.586592179
[2025-12-27 16:40:03] 2025-12-27 21:39:02,893 | INFO     | intersect: 4561327886.079913
[2025-12-27 16:40:03] 2025-12-27 21:39:02,893 | INFO     | chi2: 1.4106271250584261
[2025-12-27 16:40:03] 2025-12-27 21:39:02,894 | INFO     | current chi2=1.4106271250584261 (change=0.02149169011529002 %)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,894 | INFO     | right removable region: 178
[2025-12-27 16:40:03] 2025-12-27 21:39:02,894 | INFO     | sum of square deviations: 1778377530.0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,895 | INFO     | sum of deviations: -28363934940.000004
[2025-12-27 16:40:03] 2025-12-27 21:39:02,895 | INFO     | mean x: 1766866061.0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,895 | INFO     | mean y: 2546123.905027933
[2025-12-27 16:40:03] 2025-12-27 21:39:02,895 | INFO     | intersect: 28182880814.64872
[2025-12-27 16:40:03] 2025-12-27 21:39:02,896 | INFO     | chi2: 0.16992644853497005
[2025-12-27 16:40:03] 2025-12-27 21:39:02,896 | INFO     | current chi2=0.16992644853497005 (change=87.95642551803401 %)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,896 | INFO     | sum of square deviations: 1633472487.5
[2025-12-27 16:40:03] 2025-12-27 21:39:02,897 | INFO     | sum of deviations: -27008880757.000004
[2025-12-27 16:40:03] 2025-12-27 21:39:02,897 | INFO     | mean x: 1766866213.5
[2025-12-27 16:40:03] 2025-12-27 21:39:02,897 | INFO     | mean y: 2544637.8620689656
[2025-12-27 16:40:03] 2025-12-27 21:39:02,897 | INFO     | intersect: 29217042732.672256
[2025-12-27 16:40:03] 2025-12-27 21:39:02,897 | INFO     | chi2: 0.15310880194630977
[2025-12-27 16:40:03] 2025-12-27 21:39:02,898 | INFO     | current chi2=0.15310880194630977 (change=9.89701528729313 %)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,898 | INFO     | left removable region: 20
[2025-12-27 16:40:03] 2025-12-27 21:39:02,898 | INFO     | sum of square deviations: 1223016419.5
[2025-12-27 16:40:03] 2025-12-27 21:39:02,899 | INFO     | sum of deviations: -14653814243.0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,899 | INFO     | mean x: 1766866335.5
[2025-12-27 16:40:03] 2025-12-27 21:39:02,899 | INFO     | mean y: 2531646.405063291
[2025-12-27 16:40:03] 2025-12-27 21:39:02,899 | INFO     | intersect: 21172591720.66976
[2025-12-27 16:40:03] 2025-12-27 21:39:02,899 | INFO     | chi2: 0.11616446111626128
[2025-12-27 16:40:03] 2025-12-27 21:39:02,899 | INFO     | current memory leak: -11.98 B/s (using 158 data points, chi2=0.12)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | could have reported an average CPU frequency of 2314 MHz (10 samples)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | ..............................
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | . Timing measurements:
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | . get job = 0 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | . initial setup = 2 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | . payload setup = 5 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | . stage-in = 0 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,900 | INFO     | . payload execution = 11210 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,901 | INFO     | . stage-out = 1 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,901 | INFO     | . log creation = 0 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,901 | INFO     | ..............................
[2025-12-27 16:40:03] 2025-12-27 21:39:02,983 | INFO     | 
[2025-12-27 16:40:03] 2025-12-27 21:39:02,983 | INFO     | job summary report
[2025-12-27 16:40:03] 2025-12-27 21:39:02,983 | INFO     | --------------------------------------------------
[2025-12-27 16:40:03] 2025-12-27 21:39:02,983 | INFO     | PanDA job id: 6948705893
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | task id: 47898782
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | errors: (none)
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | pilot state: finished 
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | transexitcode: 0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | exeerrorcode: 0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | exeerrordiag: 
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | exitcode: 0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | exitmsg: OK
[2025-12-27 16:40:03] 2025-12-27 21:39:02,984 | INFO     | cpuconsumptiontime: 85780 s
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | nevents: 400
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | neventsw: 0
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | pid: 17039
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | pgrp: 17039
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | corecount: 8
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | event service: False
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | sizes: {0: 2283876, 5: 2284138, 11: 2284194, 11219: 2313504, 11221: 2322558, 11226: 2322696}
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | --------------------------------------------------
[2025-12-27 16:40:03] 2025-12-27 21:39:02,985 | INFO     | 
[2025-12-27 16:40:03] 2025-12-27 21:39:02,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-27 16:40:03] 2025-12-27 21:39:03,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-27 16:40:03] 2025-12-27 21:39:03,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-27 16:40:03] 2025-12-27 21:39:03,004 | INFO     | job 6948705893 has completed (purged errors)
[2025-12-27 16:40:03] 2025-12-27 21:39:03,004 | INFO     | overall cleanup function is called
[2025-12-27 16:40:03] 2025-12-27 21:39:04,011 | INFO     | --- collectZombieJob: --- 10, [17039]
[2025-12-27 16:40:03] 2025-12-27 21:39:04,011 | INFO     | zombie collector waiting for pid 17039
[2025-12-27 16:40:03] 2025-12-27 21:39:04,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-27 16:40:03] 2025-12-27 21:39:04,012 | INFO     | collected zombie processes
[2025-12-27 16:40:03] 2025-12-27 21:39:04,012 | INFO     | will attempt to kill all subprocesses of pid=17039
[2025-12-27 16:40:03] 2025-12-27 21:39:04,119 | INFO     | process IDs to be killed: [17039] (in reverse order)
[2025-12-27 16:40:03] 2025-12-27 21:39:04,161 | WARNING  | found no corresponding commands to process id(s)
[2025-12-27 16:40:03] 2025-12-27 21:39:04,161 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-27 16:40:03] 2025-12-27 21:39:04,163 | INFO     | did not find any defunct processes belonging to 17039
[2025-12-27 16:40:03] 2025-12-27 21:39:04,166 | INFO     | did not find any defunct processes belonging to 17039
[2025-12-27 16:40:03] 2025-12-27 21:39:04,166 | INFO     | ready for new job
[2025-12-27 16:40:03] 2025-12-27 21:39:04,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-27 16:40:03] 2025-12-27 21:39:04,167 | INFO     | ***************************************
[2025-12-27 16:40:03] 2025-12-27 21:39:04,167 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-27 16:40:03] 2025-12-27 21:39:04,167 | INFO     | ***************************************
[2025-12-27 16:40:03] 2025-12-27 21:39:04,167 | INFO     | 
[2025-12-27 16:40:03] 2025-12-27 21:39:04,168 | INFO     | architecture information:
[2025-12-27 16:40:03] 2025-12-27 21:39:04,169 | INFO     | executing command: cat /etc/os-release
[2025-12-27 16:40:03] 2025-12-27 21:39:04,179 | INFO     | cat /etc/os-release:
[2025-12-27 16:40:03] NAME="CentOS Linux"
[2025-12-27 16:40:03] VERSION="7 (Core)"
[2025-12-27 16:40:03] ID="centos"
[2025-12-27 16:40:03] ID_LIKE="rhel fedora"
[2025-12-27 16:40:03] VERSION_ID="7"
[2025-12-27 16:40:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-27 16:40:03] ANSI_COLOR="0;31"
[2025-12-27 16:40:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-27 16:40:03] HOME_URL="https://www.centos.org/"
[2025-12-27 16:40:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-27 16:40:03] 
[2025-12-27 16:40:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-27 16:40:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-27 16:40:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-27 16:40:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-27 16:40:03] 
[2025-12-27 16:40:03] 2025-12-27 21:39:04,179 | INFO     | ***************************************
[2025-12-27 16:40:03] 2025-12-27 21:39:04,682 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-27 16:40:03] 2025-12-27 21:39:04,693 | INFO     | sufficient remaining disk space (28003270656 B)
[2025-12-27 16:40:03] 2025-12-27 21:39:04,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-27 16:40:03] 2025-12-27 21:39:04,693 | INFO     | current server update state: UPDATING_FINAL
[2025-12-27 16:40:03] 2025-12-27 21:39:04,694 | INFO     | update_server=False
[2025-12-27 16:40:03] 2025-12-27 21:39:04,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-27 16:40:03] 2025-12-27 21:39:04,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-27 16:40:03] 2025-12-27 21:39:04,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-27 16:40:03] 2025-12-27 21:39:04,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-27 16:40:03] 2025-12-27 21:39:04,779 | INFO     | aborting loop
[2025-12-27 16:40:03] 2025-12-27 21:39:05,233 | INFO     | all payload control threads have been joined
[2025-12-27 16:40:03] 2025-12-27 21:39:05,427 | INFO     | all data control threads have been joined
[2025-12-27 16:40:03] 2025-12-27 21:39:05,698 | INFO     | [job] queue monitor thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:05,699 | INFO     | [job] retrieve thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:05,701 | INFO     | [payload] execute_payloads thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:05,784 | INFO     | [job] job monitor thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:05,829 | INFO     | [data] copytool_in thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:05,860 | INFO     | all job control threads have been joined
[2025-12-27 16:40:03] 2025-12-27 21:39:05,989 | INFO     | [payload] validate_pre thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:06,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-27 16:40:03] 2025-12-27 21:39:06,238 | INFO     | [payload] control thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:06,375 | INFO     | [payload] validate_post thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:06,432 | INFO     | [data] control thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:06,865 | INFO     | [job] control thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:06,933 | INFO     | [job] create_data_payload thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:07,130 | INFO     | [job] validate thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:07,252 | INFO     | [payload] failed_post thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:08,141 | INFO     | [data] copytool_out thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:08,701 | INFO     | [data] queue_monitor thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:15,578 | INFO     | job.realtimelogging is not enabled
[2025-12-27 16:40:03] 2025-12-27 21:39:16,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-27 16:40:03] 2025-12-27 21:39:34,604 | INFO     | PID=10615 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-27 16:40:03] 2025-12-27 21:39:34,604 | INFO     | .. there are 2 such processes running
[2025-12-27 16:40:03] 2025-12-27 21:39:34,604 | INFO     | found 0 job(s) in 20 queues
[2025-12-27 16:40:03] 2025-12-27 21:39:34,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-27 16:40:03] 2025-12-27 21:39:34,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-27 16:40:03] 2025-12-27 21:39:57,152 | INFO     | [monitor] cgroup control has ended
[2025-12-27 16:40:03] 2025-12-27 21:39:58,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928244164416)>', '<ExcThread(monitor, started 139927677298432)>']
[2025-12-27 16:40:03] 2025-12-27 21:39:58,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-27 16:40:03] 2025-12-27 21:39:58,724 | INFO     | [monitor] control thread has ended
[2025-12-27 16:40:03] 2025-12-27 21:40:03,389 | INFO     | all workflow threads have been joined
[2025-12-27 16:40:03] 2025-12-27 21:40:03,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-27 16:40:03] 2025-12-27 21:40:03,390 | INFO     | traces error code: 0
[2025-12-27 16:40:03] 2025-12-27 21:40:03,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-27 16:40:03] 2025-12-27 21:40:03,534 [wrapper] ==== pilot stdout END ====
[2025-12-27 16:40:03] 2025-12-27 21:40:03,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-27 16:40:03] 2025-12-27 21:40:03,542 [wrapper] pilotpid: 10615
[2025-12-27 16:40:03] 2025-12-27 21:40:03,544 [wrapper] Pilot exit status: 0
[2025-12-27 16:40:03] 2025-12-27 21:40:03,555 [wrapper] pandaids: 6948705893
[2025-12-27 16:40:03] 2025-12-27 21:40:03,588 [wrapper] cleanup supervisor_pilot 21289 10616
[2025-12-27 16:40:03] 2025-12-27 21:40:03,590 [wrapper] Test setup, not cleaning
[2025-12-27 16:40:03] 2025-12-27 21:40:03,593 [wrapper] apfmon messages muted
[2025-12-27 16:40:03] 2025-12-27 21:40:03,596 [wrapper] ==== wrapper stdout END ====
[2025-12-27 16:40:03] 2025-12-27 21:40:03,598 [wrapper] ==== wrapper stderr END ====
[2025-12-27 16:40:03]  *** Error codes and diagnostics ***
[2025-12-27 16:40:03]     "exeErrorCode": 0,
[2025-12-27 16:40:03]     "exeErrorDiag": "",
[2025-12-27 16:40:03]     "pilotErrorCode": 0,
[2025-12-27 16:40:03]     "pilotErrorDiag": "",
[2025-12-27 16:40:03]  *** Listing of results directory ***
[2025-12-27 16:40:03] total 411884
[2025-12-27 16:40:03] -rwx------ 1 boincer umatlas     36322 Dec 27 13:30 runpilot2-wrapper.sh
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas      5112 Dec 27 13:30 queuedata.json
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas    579449 Dec 27 13:30 pilot3.tar.gz
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas       100 Dec 27 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-27 16:40:03] -rwxr-xr-x 1 boincer umatlas      7986 Dec 27 13:31 run_atlas
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas       105 Dec 27 13:31 job.xml
[2025-12-27 16:40:03] -rw-r--r-- 2 boincer umatlas 213033836 Dec 27 13:31 EVNT.47898779._000066.pool.root.1
[2025-12-27 16:40:03] -rw-r--r-- 2 boincer umatlas     15847 Dec 27 13:31 start_atlas.sh
[2025-12-27 16:40:03] drwxrwx--x 2 boincer umatlas      4096 Dec 27 13:31 shared
[2025-12-27 16:40:03] -rw-r--r-- 2 boincer umatlas    592382 Dec 27 13:31 input.tar.gz
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas         0 Dec 27 13:31 boinc_lockfile
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas      2519 Dec 27 13:31 pandaJob.out
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas        57 Dec 27 13:31 setup.sh.local
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas    989264 Dec 27 13:31 agis_schedconf.cvmfs.json
[2025-12-27 16:40:03] drwx------ 5 boincer umatlas      4096 Dec 27 13:31 pilot3
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas      5952 Dec 27 16:30 init_data.xml
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas 200772111 Dec 27 16:38 HITS.47898782._006576.pool.root.1
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas       530 Dec 27 16:38 boinc_task_state.xml
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas        95 Dec 27 16:38 pilot_heartbeat.json
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas      1062 Dec 27 16:38 memory_monitor_summary.json
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas   1516240 Dec 27 16:38 agis_ddmendpoints.agis.ALL.json
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas    414045 Dec 27 16:38 log.47898782._006576.job.log.tgz.1
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas      7846 Dec 27 16:39 heartbeat.json
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas      8192 Dec 27 16:39 boinc_mmap_file
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas        28 Dec 27 16:39 wrapper_checkpoint.txt
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas      4893 Dec 27 16:40 pilotlog.txt
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas   1606470 Dec 27 16:40 log.47898782._006576.job.log.1
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas       357 Dec 27 16:40 output.list
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas       620 Dec 27 16:40 runtime_log
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas   2037760 Dec 27 16:40 result.tar.gz
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas      9343 Dec 27 16:40 runtime_log.err
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas       663 Dec 27 16:40 etvLDm4Eot8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZthKDmS9hpJn.diag
[2025-12-27 16:40:03] -rw-r--r-- 1 boincer umatlas     21370 Dec 27 16:40 stderr.txt
[2025-12-27 16:40:03] HITS file was successfully produced:
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas 200772111 Dec 27 16:38 shared/HITS.pool.root.1
[2025-12-27 16:40:03]  *** Contents of shared directory: ***
[2025-12-27 16:40:03] total 406708
[2025-12-27 16:40:03] -rw-r--r-- 2 boincer umatlas 213033836 Dec 27 13:31 ATLAS.root_0
[2025-12-27 16:40:03] -rw-r--r-- 2 boincer umatlas     15847 Dec 27 13:31 start_atlas.sh
[2025-12-27 16:40:03] -rw-r--r-- 2 boincer umatlas    592382 Dec 27 13:31 input.tar.gz
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas 200772111 Dec 27 16:38 HITS.pool.root.1
[2025-12-27 16:40:03] -rw------- 1 boincer umatlas   2037760 Dec 27 16:40 result.tar.gz
16:40:04 (6608): run_atlas exited; CPU time 85950.928705
16:40:04 (6608): called boinc_finish(0)

</stderr_txt>
]]>

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